Wall clock time and date at job start Tue Mar 31 2020 14:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 C 1.38269 * 119.97828 * 120.00228 * 4 2 1 6 6 C 1.38199 * 120.04123 * 180.02562 * 5 4 2 7 7 C 1.38354 * 119.99668 * 359.97227 * 6 5 4 8 8 Cl 1.73598 * 120.01843 * 180.02562 * 7 6 5 9 9 C 1.38443 * 119.96039 * 0.02562 * 7 6 5 10 10 Cl 1.73602 * 120.01865 * 179.97438 * 9 7 6 11 11 C 1.38201 * 119.98158 * 299.73116 * 4 2 1 12 12 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 13 13 C 1.35317 * 125.86585 * 34.71323 * 12 2 1 14 14 C 1.35354 * 106.17176 * 179.90598 * 13 12 2 15 15 C 1.50698 * 126.74927 * 180.12412 * 14 13 12 16 16 C 1.50705 * 109.47088 * 125.29503 * 15 14 13 17 17 H 1.08004 * 120.00024 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00339 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99990 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00386 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47242 * 89.99734 * 20 18 16 22 22 H 1.48498 * 109.47038 * 210.00157 * 20 18 16 23 23 H 1.48499 * 109.46769 * 329.99660 * 20 18 16 24 24 N 1.33769 * 106.49787 * 0.35256 * 14 13 12 25 25 N 1.28638 * 108.88803 * 359.77648 * 24 14 13 26 26 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 29 29 H 1.08005 * 119.97787 * 359.97438 * 5 4 2 30 30 H 1.07995 * 120.00456 * 179.97438 * 6 5 4 31 31 H 1.07999 * 120.00257 * 0.02562 * 11 4 2 32 32 H 1.07995 * 126.91508 * 0.02562 * 13 12 2 33 33 H 1.08997 * 109.47706 * 245.29624 * 15 14 13 34 34 H 1.09003 * 109.47248 * 5.29878 * 15 14 13 35 35 H 0.96997 * 120.00085 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.8273 -0.0382 -2.1403 6 6 3.2883 -0.6883 -3.2693 7 6 2.9548 -2.0129 -3.4894 8 17 3.5341 -2.8303 -4.9071 9 6 2.1589 -2.6861 -2.5783 10 17 1.7390 -4.3479 -2.8533 11 6 1.7029 -2.0353 -1.4458 12 7 2.0184 -0.6906 1.1962 13 6 1.4328 -1.7554 1.7915 14 6 2.2122 -2.0700 2.8524 15 6 1.9870 -3.1891 3.8363 16 6 3.2164 -4.0586 3.8980 17 1 4.0750 -3.8240 3.2862 18 6 3.2454 -5.1529 4.7361 19 7 2.2001 -5.4383 5.4814 20 14 4.7695 -6.2304 4.8131 21 1 5.6873 -5.7154 5.8607 22 1 4.3746 -7.6236 5.1421 23 1 5.4580 -6.2086 3.4975 24 7 3.2188 -1.1890 2.8588 25 7 3.0751 -0.3853 1.8648 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.0875 0.9960 -1.9689 30 1 3.9088 -0.1625 -3.9798 31 1 1.0852 -2.5609 -0.7327 32 1 0.5269 -2.2550 1.4813 33 1 1.7879 -2.7709 4.8230 34 1 1.1342 -3.7879 3.5166 35 1 2.2204 -6.2085 6.0708 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603212555.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:48 Heat of formation + Delta-G solvation = 83.226305 kcal Electronic energy + Delta-G solvation = -22046.523464 eV Core-core repulsion = 18518.512401 eV Total energy + Delta-G solvation = -3528.011063 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 325.044 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.11088 -40.81105 -38.02218 -37.63368 -36.63680 -35.42027 -33.18913 -32.30961 -32.07233 -30.23329 -29.47088 -25.92160 -25.31649 -24.17595 -23.59124 -22.09387 -21.41808 -18.85305 -18.36735 -18.07251 -17.47154 -16.87513 -16.58699 -16.37610 -15.72269 -15.23421 -15.10963 -14.96615 -14.55785 -14.34161 -14.02981 -13.77061 -13.59964 -13.18077 -12.99782 -12.90195 -12.87009 -12.63162 -12.54412 -12.41662 -12.32181 -12.10850 -11.97133 -11.87010 -11.66702 -11.36359 -10.89189 -10.58359 -10.10829 -9.85733 -9.82970 -8.18796 -6.26779 -0.33462 -0.05930 0.71448 0.75287 1.10140 1.39309 1.40873 1.50742 1.53383 1.78521 2.33597 2.43989 3.14290 3.20595 3.37780 3.54603 3.78011 3.85939 3.99168 4.08321 4.14200 4.29175 4.44558 4.59458 4.62855 4.69040 4.71508 4.85911 4.90535 5.09656 5.18624 5.31476 5.42465 5.45238 5.55866 5.77200 5.84503 6.22967 6.81305 7.39782 7.72893 8.92125 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.011772 B = 0.003878 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.929724 B = 7217.697231 C = 8609.515796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.146 0.854 4 C -0.097 4.097 5 C -0.071 4.071 6 C -0.095 4.095 7 C -0.034 4.034 8 Cl -0.050 7.050 9 C -0.047 4.047 10 Cl -0.056 7.056 11 C -0.089 4.089 12 N -0.278 5.278 13 C -0.050 4.050 14 C -0.004 4.004 15 C 0.102 3.898 16 C -0.522 4.522 17 H 0.042 0.958 18 C 0.012 3.988 19 N -0.925 5.925 20 Si 0.957 3.043 21 H -0.274 1.274 22 H -0.274 1.274 23 H -0.274 1.274 24 N -0.307 5.307 25 N -0.112 5.112 26 H 0.118 0.882 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.178 0.822 30 H 0.173 0.827 31 H 0.140 0.860 32 H 0.214 0.786 33 H 0.009 0.991 34 H 0.032 0.968 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.395 12.581 -23.460 27.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.082 3.918 3 H 0.164 0.836 4 C -0.099 4.099 5 C -0.089 4.089 6 C -0.114 4.114 7 C -0.062 4.062 8 Cl -0.020 7.020 9 C -0.075 4.075 10 Cl -0.027 7.027 11 C -0.108 4.108 12 N -0.074 5.074 13 C -0.200 4.200 14 C -0.142 4.142 15 C 0.064 3.936 16 C -0.560 4.560 17 H 0.061 0.939 18 C -0.187 4.187 19 N -0.566 5.566 20 Si 0.782 3.218 21 H -0.200 1.200 22 H -0.199 1.199 23 H -0.199 1.199 24 N -0.174 5.174 25 N -0.090 5.090 26 H 0.136 0.864 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.195 0.805 30 H 0.191 0.809 31 H 0.157 0.843 32 H 0.230 0.770 33 H 0.027 0.973 34 H 0.051 0.949 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.243 13.219 -23.391 27.201 hybrid contribution -0.130 -1.980 0.165 1.991 sum -4.373 11.239 -23.227 26.171 Atomic orbital electron populations 1.22291 0.88751 1.04886 1.05823 1.20895 0.97745 0.96857 0.76311 0.83601 1.19982 0.99609 0.93705 0.96588 1.21507 0.93448 1.02157 0.91794 1.21392 0.99883 0.91087 0.99030 1.21089 0.99793 0.94636 0.90704 1.98397 1.87144 1.79063 1.37440 1.20864 1.01995 0.87421 0.97208 1.98404 1.92118 1.16074 1.96083 1.21027 0.99731 0.94767 0.95275 1.47706 1.16951 1.21623 1.21113 1.23470 1.04111 0.94897 0.97537 1.22603 0.92954 0.98959 0.99669 1.17373 0.96818 0.88453 0.90980 1.21256 1.00485 1.10426 1.23848 0.93945 1.25724 0.99222 0.98771 0.94962 1.70030 1.30874 1.28878 1.26791 0.85576 0.79664 0.78168 0.78419 1.20009 1.19879 1.19872 1.74985 1.22953 1.05104 1.14356 1.78063 1.05659 1.22015 1.03312 0.86386 0.90897 0.90322 0.80468 0.80918 0.84258 0.76951 0.97319 0.94931 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 8.64 71.98 0.62 -1.13 16 2 C 0.18 3.04 3.47 44.25 0.15 3.19 16 3 H 0.15 1.75 7.88 -2.39 -0.02 1.74 16 4 C -0.10 -1.66 4.98 -19.87 -0.10 -1.76 16 5 C -0.07 -0.90 9.67 22.27 0.22 -0.68 16 6 C -0.10 -1.32 9.83 22.29 0.22 -1.10 16 7 C -0.03 -0.66 6.32 22.35 0.14 -0.52 16 8 Cl -0.05 -0.94 27.96 -2.72 -0.08 -1.01 16 9 C -0.05 -1.05 6.32 22.35 0.14 -0.91 16 10 Cl -0.06 -1.34 27.96 -2.72 -0.08 -1.42 16 11 C -0.09 -1.87 8.62 22.29 0.19 -1.68 16 12 N -0.28 -8.14 3.18 -330.73 -1.05 -9.19 16 13 C -0.05 -1.69 9.50 83.49 0.79 -0.90 16 14 C 0.00 -0.18 6.44 41.60 0.27 0.08 16 15 C 0.10 5.52 5.55 29.10 0.16 5.68 16 16 C -0.52 -31.03 9.09 25.60 0.23 -30.80 16 17 H 0.04 2.60 7.74 -2.91 -0.02 2.58 16 18 C 0.01 0.67 5.46 84.65 0.46 1.14 16 19 N -0.93 -55.68 13.29 21.45 0.28 -55.40 16 20 Si 0.96 46.16 29.54 68.60 2.03 48.18 16 21 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 24 N -0.31 -14.68 12.40 -48.60 -0.60 -15.28 16 25 N -0.11 -4.34 13.17 37.02 0.49 -3.85 16 26 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.85 6.43 -2.39 -0.02 0.83 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.18 1.04 7.94 -2.91 -0.02 1.01 16 30 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.14 3.00 6.56 -2.91 -0.02 2.98 16 32 H 0.21 5.43 7.10 -2.91 -0.02 5.41 16 33 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.03 1.73 8.12 -2.39 -0.02 1.71 16 35 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -75.59 335.27 5.63 -69.97 By element: Atomic # 1 Polarization: -3.74 SS G_CDS: 1.13 Total: -2.61 kcal Atomic # 6 Polarization: -32.89 SS G_CDS: 3.50 Total: -29.38 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -0.88 Total: -83.73 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -0.15 Total: -2.43 kcal Total: -75.59 5.63 -69.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603212555.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.193 kcal (2) G-P(sol) polarization free energy of solvation -75.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds