Wall clock time and date at job start Tue Mar 31 2020 15:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86793 * 120.00150 * 2 1 4 4 H 1.48497 * 109.47426 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47483 * 300.00073 * 3 2 1 6 6 H 1.48500 * 109.47052 * 59.99802 * 3 2 1 7 7 C 1.38805 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99983 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00109 * 0.27445 * 7 2 1 10 10 C 1.76203 * 100.00173 * 174.66500 * 9 7 2 11 11 C 1.39117 * 120.18478 * 6.10724 * 10 9 7 12 12 C 1.37918 * 120.04424 * 179.74744 * 11 10 9 13 13 C 1.38657 * 120.44045 * 0.55032 * 12 11 10 14 14 C 1.37802 * 120.37823 * 359.70059 * 13 12 11 15 15 C 1.39677 * 119.94136 * 0.02562 * 14 13 12 16 16 C 1.47429 * 120.21505 * 180.02562 * 15 14 13 17 17 O 1.21616 * 119.99898 * 125.64577 * 16 15 14 18 18 N 1.34781 * 120.00244 * 305.64448 * 16 15 14 19 19 C 1.46374 * 119.64445 * 353.86075 * 18 16 15 20 20 C 1.53759 * 109.20595 * 114.90916 * 19 18 16 21 21 S 1.81747 * 108.75250 * 57.83231 * 20 19 18 22 22 O 1.42094 * 109.46731 * 189.31016 * 21 20 19 23 23 C 1.81743 * 102.30440 * 305.34386 * 21 20 19 24 24 C 1.46376 * 119.64982 * 174.13073 * 18 16 15 25 25 H 0.96996 * 119.99742 * 0.02562 * 1 2 3 26 26 H 1.07992 * 119.97836 * 359.97438 * 11 10 9 27 27 H 1.07999 * 119.77851 * 180.27826 * 12 11 10 28 28 H 1.07999 * 119.80793 * 179.72279 * 13 12 11 29 29 H 1.08007 * 120.02754 * 179.97438 * 14 13 12 30 30 H 1.08998 * 109.47101 * 234.91561 * 19 18 16 31 31 H 1.08999 * 109.46919 * 354.91002 * 19 18 16 32 32 H 1.09000 * 109.70023 * 297.99891 * 20 19 18 33 33 H 1.08998 * 109.51299 * 177.55578 * 20 19 18 34 34 H 1.08997 * 109.58658 * 294.74746 * 23 21 20 35 35 H 1.09003 * 109.58043 * 174.33182 * 23 21 20 36 36 H 1.09011 * 109.46508 * 5.09431 * 24 18 16 37 37 H 1.08993 * 109.46885 * 125.08127 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.7095 1.3463 0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8908 2.3964 1.2125 7 6 2.0096 -1.2021 -0.0005 8 1 3.0896 -1.2021 -0.0001 9 16 1.1285 -2.7281 -0.0085 10 6 2.4725 -3.8565 -0.1675 11 6 3.7836 -3.3943 -0.1167 12 6 4.8334 -4.2808 -0.2363 13 6 4.5927 -5.6341 -0.4189 14 6 3.3010 -6.1106 -0.4770 15 6 2.2260 -5.2276 -0.3521 16 6 0.8416 -5.7309 -0.4128 17 8 0.0640 -5.4820 0.4886 18 7 0.4376 -6.4668 -1.4672 19 6 1.3349 -6.6488 -2.6093 20 6 1.7188 -8.1336 -2.7193 21 16 0.2011 -9.1184 -2.8921 22 8 0.5170 -10.4991 -2.7788 23 6 -0.7656 -8.5974 -1.4440 24 6 -0.8958 -7.0706 -1.4606 25 1 -0.4849 0.8400 -0.0004 26 1 3.9796 -2.3412 0.0201 27 1 5.8496 -3.9179 -0.1917 28 1 5.4224 -6.3186 -0.5157 29 1 3.1201 -7.1657 -0.6198 30 1 0.8297 -6.3330 -3.5221 31 1 2.2331 -6.0485 -2.4649 32 1 2.2542 -8.4422 -1.8214 33 1 2.3522 -8.2821 -3.5939 34 1 -0.2564 -8.9107 -0.5327 35 1 -1.7569 -9.0490 -1.4848 36 1 -1.4387 -6.7426 -0.5740 37 1 -1.4388 -6.7619 -2.3538 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731005924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:04 Heat of formation + Delta-G solvation = -32.505517 kcal Electronic energy + Delta-G solvation = -22936.498058 eV Core-core repulsion = 19511.096243 eV Total energy + Delta-G solvation = -3425.401815 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.059 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.09034 -37.77653 -36.32254 -35.71591 -32.85619 -32.29037 -30.68515 -30.48417 -29.63044 -25.94568 -24.39838 -23.78651 -22.21822 -22.05485 -19.69200 -18.20226 -17.55440 -17.11788 -16.44890 -15.99345 -15.35483 -15.30451 -15.19860 -14.86408 -14.77452 -14.52176 -14.10125 -13.80853 -13.25155 -13.08202 -13.02613 -12.83924 -12.35736 -12.12748 -12.04244 -11.78946 -11.75109 -11.50028 -11.27512 -11.25380 -11.05757 -10.39742 -10.09198 -9.87935 -9.67677 -9.55795 -8.84550 -8.75484 -8.55440 -8.47829 -8.37380 -6.66005 -6.56577 -4.28433 1.35125 1.54622 1.89252 2.30691 2.99740 3.02980 3.06254 3.12467 3.15281 3.30330 3.57247 3.95159 4.23028 4.54141 4.65675 4.85183 4.86167 4.92639 4.98528 5.02615 5.21308 5.30526 5.31456 5.49596 5.66020 5.69291 5.75354 5.81592 5.88201 6.04509 6.25382 6.45806 6.59715 6.77708 6.89174 7.02582 7.34518 7.45978 7.48765 8.07661 8.46624 8.90736 10.49297 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.020232 B = 0.003749 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.581431 B = 7467.813611 C = 8329.017957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.081 3.919 3 Si 0.924 3.076 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.569 4.569 8 H 0.095 0.905 9 S 0.104 5.896 10 C -0.048 4.048 11 C -0.150 4.150 12 C -0.079 4.079 13 C -0.178 4.178 14 C -0.068 4.068 15 C -0.165 4.165 16 C 0.573 3.427 17 O -0.512 6.512 18 N -0.624 5.624 19 C 0.127 3.873 20 C -0.458 4.458 21 S 1.236 4.764 22 O -0.859 6.859 23 C -0.454 4.454 24 C 0.133 3.867 25 H 0.275 0.725 26 H 0.141 0.859 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.105 0.895 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.599 -11.787 -9.180 15.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.130 4.130 3 Si 0.749 3.251 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.716 4.716 8 H 0.113 0.887 9 S 0.365 5.635 10 C -0.166 4.166 11 C -0.175 4.175 12 C -0.100 4.100 13 C -0.202 4.202 14 C -0.088 4.088 15 C -0.179 4.179 16 C 0.362 3.638 17 O -0.387 6.387 18 N -0.359 5.359 19 C 0.002 3.998 20 C -0.596 4.596 21 S 1.435 4.565 22 O -0.855 6.855 23 C -0.593 4.593 24 C 0.009 3.991 25 H 0.085 0.915 26 H 0.158 0.842 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.143 0.857 34 H 0.107 0.893 35 H 0.141 0.859 36 H 0.123 0.877 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.714 -12.122 -9.258 15.270 hybrid contribution 3.123 0.594 1.925 3.716 sum 2.409 -11.528 -7.333 13.874 Atomic orbital electron populations 1.69977 1.06218 1.28416 1.44518 1.25116 0.95084 0.99720 0.93100 0.86012 0.79852 0.80950 0.78238 1.19106 1.20149 1.20194 1.23602 0.96374 0.91742 1.59844 0.88715 1.84029 1.04250 0.95783 1.79457 1.22879 1.00408 0.96512 0.96837 1.21447 0.91268 1.00990 1.03846 1.21094 0.98346 0.93288 0.97282 1.20664 0.95821 0.95577 1.08177 1.20884 0.92184 0.97705 0.98069 1.19076 0.92033 0.93306 1.13463 1.18437 0.87534 0.76649 0.81162 1.90797 1.54689 1.55716 1.37460 1.47958 1.16045 1.52877 1.18992 1.21435 0.96134 0.92869 0.89322 1.28136 1.16643 1.06666 1.08197 1.70383 0.94113 0.87257 1.04775 1.93101 1.82749 1.26767 1.82845 1.27977 1.11445 1.03676 1.16209 1.21043 0.84502 0.88035 1.05472 0.91515 0.84198 0.86840 0.86951 0.87100 0.89201 0.87498 0.89053 0.85722 0.89270 0.85907 0.87676 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.80 13.22 55.49 0.73 -23.07 16 2 C 0.08 2.13 5.49 -17.46 -0.10 2.03 16 3 Si 0.92 19.91 29.55 -169.99 -5.02 14.88 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.57 -15.01 9.08 30.94 0.28 -14.73 16 8 H 0.10 2.37 4.82 -52.48 -0.25 2.11 16 9 S 0.10 2.65 19.93 -107.50 -2.14 0.50 16 10 C -0.05 -1.04 6.14 -38.39 -0.24 -1.27 16 11 C -0.15 -2.97 9.25 -39.37 -0.36 -3.34 16 12 C -0.08 -1.28 10.03 -39.54 -0.40 -1.67 16 13 C -0.18 -2.65 10.02 -39.59 -0.40 -3.05 16 14 C -0.07 -1.07 7.74 -39.20 -0.30 -1.38 16 15 C -0.16 -3.10 4.56 -104.76 -0.48 -3.58 16 16 C 0.57 10.60 6.49 -12.52 -0.08 10.52 16 17 O -0.51 -11.37 15.36 5.26 0.08 -11.29 16 18 N -0.62 -8.35 2.78 -174.53 -0.49 -8.83 16 19 C 0.13 1.27 5.54 -3.72 -0.02 1.25 16 20 C -0.46 -3.96 6.53 37.55 0.25 -3.72 16 21 S 1.24 10.31 13.71 -107.50 -1.47 8.84 16 22 O -0.86 -12.84 18.14 -35.23 -0.64 -13.48 16 23 C -0.45 -4.25 6.65 37.28 0.25 -4.00 16 24 C 0.13 1.42 6.23 -3.98 -0.02 1.40 16 25 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.14 2.90 4.94 -52.49 -0.26 2.64 16 27 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 28 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 29 H 0.11 1.50 6.12 -52.48 -0.32 1.18 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.11 1.25 5.20 -51.93 -0.27 0.98 16 32 H 0.09 0.96 6.59 -51.93 -0.34 0.62 16 33 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.11 1.38 6.88 -51.92 -0.36 1.02 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 327.43 15.07 4.93 4.93 Total: -1.00 -36.50 327.43 -9.53 -46.03 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -3.90 Total: 3.02 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -1.62 Total: -21.53 kcal Atomic # 7 Polarization: -32.15 SS G_CDS: 0.25 Total: -31.90 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.56 Total: -24.78 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 12.96 SS G_CDS: -3.62 Total: 9.34 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -36.50 -9.53 -46.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731005924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.529 kcal (2) G-P(sol) polarization free energy of solvation -36.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds