Wall clock time and date at job start Tue Mar 31 2020 15:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86793 * 120.00150 * 2 1 4 4 H 1.48497 * 109.47426 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47483 * 300.00073 * 3 2 1 6 6 H 1.48500 * 109.47052 * 59.99802 * 3 2 1 7 7 C 1.38805 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99983 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00109 * 0.27445 * 7 2 1 10 10 C 1.76203 * 100.00173 * 174.66500 * 9 7 2 11 11 C 1.39117 * 120.18478 * 6.10724 * 10 9 7 12 12 C 1.37918 * 120.04424 * 179.74744 * 11 10 9 13 13 C 1.38657 * 120.44045 * 0.55032 * 12 11 10 14 14 C 1.37802 * 120.37823 * 359.70059 * 13 12 11 15 15 C 1.39677 * 119.94136 * 0.02562 * 14 13 12 16 16 C 1.47429 * 120.21505 * 180.02562 * 15 14 13 17 17 O 1.21616 * 119.99898 * 125.64577 * 16 15 14 18 18 N 1.34781 * 120.00244 * 305.64448 * 16 15 14 19 19 C 1.46374 * 119.64445 * 353.86075 * 18 16 15 20 20 C 1.53759 * 109.20595 * 114.90916 * 19 18 16 21 21 S 1.81747 * 108.75250 * 57.83231 * 20 19 18 22 22 O 1.42094 * 109.46731 * 189.31016 * 21 20 19 23 23 C 1.81743 * 102.30440 * 305.34386 * 21 20 19 24 24 C 1.46376 * 119.64982 * 174.13073 * 18 16 15 25 25 H 0.96996 * 119.99742 * 0.02562 * 1 2 3 26 26 H 1.07992 * 119.97836 * 359.97438 * 11 10 9 27 27 H 1.07999 * 119.77851 * 180.27826 * 12 11 10 28 28 H 1.07999 * 119.80793 * 179.72279 * 13 12 11 29 29 H 1.08007 * 120.02754 * 179.97438 * 14 13 12 30 30 H 1.08998 * 109.47101 * 234.91561 * 19 18 16 31 31 H 1.08999 * 109.46919 * 354.91002 * 19 18 16 32 32 H 1.09000 * 109.70023 * 297.99891 * 20 19 18 33 33 H 1.08998 * 109.51299 * 177.55578 * 20 19 18 34 34 H 1.08997 * 109.58658 * 294.74746 * 23 21 20 35 35 H 1.09003 * 109.58043 * 174.33182 * 23 21 20 36 36 H 1.09011 * 109.46508 * 5.09431 * 24 18 16 37 37 H 1.08993 * 109.46885 * 125.08127 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.7095 1.3463 0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8908 2.3964 1.2125 7 6 2.0096 -1.2021 -0.0005 8 1 3.0896 -1.2021 -0.0001 9 16 1.1285 -2.7281 -0.0085 10 6 2.4725 -3.8565 -0.1675 11 6 3.7836 -3.3943 -0.1167 12 6 4.8334 -4.2808 -0.2363 13 6 4.5927 -5.6341 -0.4189 14 6 3.3010 -6.1106 -0.4770 15 6 2.2260 -5.2276 -0.3521 16 6 0.8416 -5.7309 -0.4128 17 8 0.0640 -5.4820 0.4886 18 7 0.4376 -6.4668 -1.4672 19 6 1.3349 -6.6488 -2.6093 20 6 1.7188 -8.1336 -2.7193 21 16 0.2011 -9.1184 -2.8921 22 8 0.5170 -10.4991 -2.7788 23 6 -0.7656 -8.5974 -1.4440 24 6 -0.8958 -7.0706 -1.4606 25 1 -0.4849 0.8400 -0.0004 26 1 3.9796 -2.3412 0.0201 27 1 5.8496 -3.9179 -0.1917 28 1 5.4224 -6.3186 -0.5157 29 1 3.1201 -7.1657 -0.6198 30 1 0.8297 -6.3330 -3.5221 31 1 2.2331 -6.0485 -2.4649 32 1 2.2542 -8.4422 -1.8214 33 1 2.3522 -8.2821 -3.5939 34 1 -0.2564 -8.9107 -0.5327 35 1 -1.7569 -9.0490 -1.4848 36 1 -1.4387 -6.7426 -0.5740 37 1 -1.4388 -6.7619 -2.3538 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731005924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:03 Heat of formation + Delta-G solvation = -59.277112 kcal Electronic energy + Delta-G solvation = -22937.658962 eV Core-core repulsion = 19511.096243 eV Total energy + Delta-G solvation = -3426.562719 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.059 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.39545 -39.15989 -37.51881 -36.76620 -34.78490 -33.30565 -31.94379 -31.85231 -30.69519 -27.88184 -25.56293 -24.69673 -23.59420 -23.29103 -20.97751 -19.79950 -18.73444 -18.21310 -17.76841 -17.31098 -17.03281 -16.53140 -16.17270 -16.01829 -15.72512 -15.66825 -15.28460 -15.22667 -14.65815 -14.58239 -14.35136 -13.90169 -13.54913 -13.39698 -13.19242 -13.04413 -12.99328 -12.83321 -12.69478 -12.50873 -12.41114 -12.04882 -11.50598 -11.42123 -11.16469 -10.91825 -10.46198 -10.39250 -9.86926 -9.72484 -9.28837 -8.52016 -8.48204 -6.27574 0.12736 0.46347 0.61585 1.27345 1.37830 1.47074 1.56668 1.59901 1.67033 1.99712 2.19263 2.75659 2.79504 2.94247 3.17173 3.53320 3.73983 3.92403 4.00870 4.09299 4.17191 4.23855 4.39796 4.50586 4.56788 4.58008 4.78760 4.86536 4.90535 4.94418 5.04121 5.08997 5.34216 5.43516 5.50750 5.59682 5.63574 6.04497 6.14314 6.23965 6.94347 7.13025 8.59637 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.020232 B = 0.003749 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.581431 B = 7467.813611 C = 8329.017957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.025 3.975 3 Si 0.997 3.003 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.274 1.274 7 C -0.576 4.576 8 H 0.100 0.900 9 S 0.002 5.998 10 C -0.065 4.065 11 C -0.166 4.166 12 C -0.073 4.073 13 C -0.150 4.150 14 C -0.065 4.065 15 C -0.164 4.164 16 C 0.562 3.438 17 O -0.565 6.565 18 N -0.615 5.615 19 C 0.117 3.883 20 C -0.455 4.455 21 S 1.313 4.687 22 O -0.920 6.920 23 C -0.453 4.453 24 C 0.126 3.874 25 H 0.276 0.724 26 H 0.124 0.876 27 H 0.151 0.849 28 H 0.160 0.840 29 H 0.139 0.861 30 H 0.133 0.867 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.158 0.842 34 H 0.060 0.940 35 H 0.147 0.853 36 H 0.074 0.926 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.328 -13.506 -11.337 18.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.181 4.181 3 Si 0.818 3.182 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.199 1.199 7 C -0.723 4.723 8 H 0.118 0.882 9 S 0.258 5.742 10 C -0.182 4.182 11 C -0.191 4.191 12 C -0.093 4.093 13 C -0.172 4.172 14 C -0.085 4.085 15 C -0.176 4.176 16 C 0.351 3.649 17 O -0.444 6.444 18 N -0.348 5.348 19 C -0.006 4.006 20 C -0.594 4.594 21 S 1.512 4.488 22 O -0.916 6.916 23 C -0.591 4.591 24 C 0.004 3.996 25 H 0.086 0.914 26 H 0.141 0.859 27 H 0.169 0.831 28 H 0.178 0.822 29 H 0.157 0.843 30 H 0.151 0.849 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.175 0.825 34 H 0.080 0.920 35 H 0.165 0.835 36 H 0.093 0.907 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.079 -13.946 -11.467 18.174 hybrid contribution 2.444 0.836 2.540 3.622 sum 4.522 -13.110 -8.927 16.493 Atomic orbital electron populations 1.70119 1.07954 1.29238 1.46496 1.26137 0.95925 1.03370 0.92670 0.84931 0.78796 0.76125 0.78368 1.17958 1.19265 1.19946 1.23848 0.96610 0.92051 1.59762 0.88214 1.84139 1.08188 0.98003 1.83891 1.22728 0.99435 0.96661 0.99406 1.21476 0.91664 1.01101 1.04839 1.21487 0.98939 0.93384 0.95478 1.21252 0.96653 0.95599 1.03706 1.21235 0.91737 0.98532 0.96999 1.19376 0.93540 0.92627 1.12092 1.18615 0.87269 0.77204 0.81847 1.90771 1.55742 1.58029 1.39841 1.48068 1.17347 1.51096 1.18276 1.21783 0.95641 0.93691 0.89449 1.28128 1.17031 1.05201 1.09017 1.69745 0.92537 0.84278 1.02258 1.92984 1.83892 1.30892 1.83795 1.28000 1.13062 1.02542 1.15496 1.21299 0.83290 0.88746 1.06310 0.91425 0.85888 0.83122 0.82220 0.84343 0.84898 0.88860 0.90554 0.82451 0.92041 0.83516 0.90713 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.82 13.22 21.65 0.29 -52.53 16 2 C 0.03 1.37 5.49 84.87 0.47 1.83 16 3 Si 1.00 41.88 29.55 68.60 2.03 43.91 16 4 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.58 -31.97 9.08 67.96 0.62 -31.35 16 8 H 0.10 5.20 4.82 -2.91 -0.01 5.19 16 9 S 0.00 0.09 19.93 -56.49 -1.13 -1.03 16 10 C -0.07 -2.91 6.14 23.04 0.14 -2.77 16 11 C -0.17 -6.53 9.25 22.40 0.21 -6.32 16 12 C -0.07 -2.09 10.03 22.29 0.22 -1.87 16 13 C -0.15 -3.70 10.02 22.27 0.22 -3.48 16 14 C -0.07 -1.84 7.74 22.51 0.17 -1.67 16 15 C -0.16 -6.14 4.56 -19.95 -0.09 -6.23 16 16 C 0.56 21.28 6.49 86.66 0.56 21.84 16 17 O -0.57 -26.78 15.36 -4.08 -0.06 -26.84 16 18 N -0.61 -15.85 2.78 -824.35 -2.29 -18.14 16 19 C 0.12 1.98 5.54 86.66 0.48 2.45 16 20 C -0.45 -6.12 6.53 72.24 0.47 -5.64 16 21 S 1.31 17.94 13.71 -56.49 -0.77 17.17 16 22 O -0.92 -25.51 18.14 -148.98 -2.70 -28.22 16 23 C -0.45 -7.74 6.65 72.06 0.48 -7.26 16 24 C 0.13 2.57 6.23 86.48 0.54 3.11 16 25 H 0.28 14.90 8.31 -92.71 -0.77 14.12 16 26 H 0.12 5.22 4.94 -2.91 -0.01 5.20 16 27 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 28 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 29 H 0.14 3.19 6.12 -2.91 -0.02 3.18 16 30 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.91 5.20 -2.39 -0.01 1.90 16 32 H 0.08 1.34 6.59 -2.39 -0.02 1.32 16 33 H 0.16 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.15 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 2.05 6.88 -2.38 -0.02 2.04 16 37 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -88.21 327.43 0.97 -87.25 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 1.12 Total: 15.79 kcal Atomic # 6 Polarization: -41.85 SS G_CDS: 4.49 Total: -37.35 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -2.01 Total: -70.68 kcal Atomic # 8 Polarization: -52.29 SS G_CDS: -2.77 Total: -55.06 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 18.04 SS G_CDS: -1.90 Total: 16.14 kcal Total: -88.21 0.97 -87.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731005924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.971 kcal (2) G-P(sol) polarization free energy of solvation -88.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds