Wall clock time and date at job start Tue Mar 31 2020 15:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.36830 * 125.16476 * 11.13314 * 3 2 1 5 5 C 1.36670 * 114.73624 * 179.76292 * 4 3 2 6 6 C 1.36808 * 114.73902 * 0.49633 * 5 4 3 7 7 C 1.46971 * 125.15996 * 179.78812 * 6 5 4 8 8 O 1.21856 * 119.99867 * 359.72620 * 7 6 5 9 9 C 1.46383 * 120.00061 * 179.72331 * 7 6 5 10 10 C 1.34991 * 119.99935 * 173.36437 * 9 7 6 11 11 C 1.47147 * 119.99917 * 348.92438 * 10 9 7 12 12 C 1.39948 * 120.14060 * 131.97237 * 11 10 9 13 13 C 1.37921 * 119.95975 * 180.02562 * 12 11 10 14 14 C 1.38304 * 120.24986 * 359.97215 * 13 12 11 15 15 C 1.39019 * 120.28587 * 0.02562 * 14 13 12 16 16 O 1.35753 * 119.98610 * 179.97438 * 15 14 13 17 17 C 1.34834 * 116.99827 * 5.59537 * 16 15 14 18 18 H 1.08001 * 119.99762 * 354.91499 * 17 16 15 19 19 C 1.38654 * 119.99855 * 174.91148 * 17 16 15 20 20 N 1.31561 * 119.99934 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00303 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47456 * 89.99968 * 21 19 17 23 23 H 1.48505 * 109.47240 * 210.00060 * 21 19 17 24 24 H 1.48504 * 109.47090 * 329.99925 * 21 19 17 25 25 C 1.38563 * 120.03308 * 359.72398 * 15 14 13 26 26 S 1.75836 * 125.15872 * 191.17115 * 3 2 1 27 27 H 1.07999 * 122.63150 * 0.04839 * 4 3 2 28 28 H 1.08004 * 122.62969 * 180.29533 * 5 4 3 29 29 H 1.07995 * 120.00349 * 353.36307 * 9 7 6 30 30 H 1.07991 * 120.00145 * 168.64578 * 10 9 7 31 31 H 1.07997 * 120.02456 * 359.97438 * 12 11 10 32 32 H 1.07991 * 119.87759 * 180.02562 * 13 12 11 33 33 H 1.07993 * 119.85886 * 180.02562 * 14 13 12 34 34 H 0.96996 * 119.99987 * 179.97438 * 20 19 17 35 35 H 1.08005 * 120.12467 * 180.27742 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3565 -1.0965 -0.2160 5 6 4.7005 -0.8522 -0.1733 6 6 5.0381 0.4473 0.0890 7 6 6.4114 0.9610 0.1909 8 8 7.3567 0.2066 0.0420 9 6 6.6436 2.3789 0.4710 10 6 7.8972 2.8257 0.6973 11 6 8.9938 1.8667 0.9047 12 6 10.1991 2.0164 0.2095 13 6 11.2243 1.1151 0.4064 14 6 11.0667 0.0626 1.2897 15 6 9.8737 -0.0959 1.9857 16 8 9.7254 -1.1316 2.8507 17 6 10.8095 -1.9009 3.0761 18 1 11.7176 -1.7316 2.5166 19 6 10.7584 -2.9094 4.0263 20 7 11.8164 -3.6598 4.2466 21 14 9.1876 -3.2027 4.9937 22 1 8.3363 -4.1812 4.2706 23 1 9.5260 -3.7384 6.3367 24 1 8.4516 -1.9215 5.1429 25 6 8.8379 0.8056 1.8008 26 16 3.5799 1.4114 0.2785 27 1 2.9488 -2.0777 -0.4098 28 1 5.4382 -1.6252 -0.3308 29 1 5.8121 3.0675 0.4966 30 1 8.0960 3.8869 0.7216 31 1 10.3262 2.8367 -0.4813 32 1 12.1540 1.2321 -0.1304 33 1 11.8737 -0.6393 1.4393 34 1 11.7808 -4.3650 4.9116 35 1 7.9121 0.6865 2.3441 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762443077.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:07 Heat of formation + Delta-G solvation = 61.495427 kcal Electronic energy + Delta-G solvation = -22898.194286 eV Core-core repulsion = 19341.424706 eV Total energy + Delta-G solvation = -3556.769580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.056 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.94596 -38.92149 -38.05365 -36.75728 -36.41903 -33.50198 -32.36381 -30.94607 -29.62380 -28.94973 -26.53914 -25.20823 -23.84464 -21.95147 -21.19541 -21.02138 -19.60054 -18.51176 -17.66487 -17.29058 -16.44796 -16.08109 -15.32025 -15.00765 -14.83009 -14.61241 -14.45959 -14.22678 -13.91710 -13.75964 -13.68745 -13.50155 -13.26645 -12.99624 -12.61226 -12.41753 -12.35702 -12.29985 -12.18089 -11.50679 -11.37387 -10.96533 -10.91741 -10.74360 -10.18962 -9.89059 -9.70367 -9.37341 -9.16244 -9.04197 -8.86306 -7.82948 -7.37298 -6.40073 -4.06554 -0.38136 0.69679 0.83928 1.31705 1.82262 2.26013 2.32350 2.47067 2.88165 3.20372 3.23337 3.26109 3.40247 3.46095 3.85312 4.24660 4.48167 4.67276 4.79899 4.96219 4.98322 5.04608 5.12624 5.34588 5.46959 5.54922 5.66812 5.73522 5.88345 5.95642 6.12140 6.15640 6.22667 6.53685 6.74494 6.99102 7.01209 7.12507 7.28342 7.53019 7.57529 7.79754 8.04626 8.95497 9.58520 10.67824 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.011760 B = 0.003682 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.424968 B = 7602.471526 C = 9493.667068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.281 3.719 3 C -0.150 4.150 4 C -0.068 4.068 5 C -0.080 4.080 6 C -0.231 4.231 7 C 0.431 3.569 8 O -0.399 6.399 9 C -0.256 4.256 10 C 0.018 3.982 11 C -0.052 4.052 12 C -0.175 4.175 13 C -0.085 4.085 14 C -0.204 4.204 15 C 0.157 3.843 16 O -0.219 6.219 17 C -0.387 4.387 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.881 5.881 21 Si 0.904 3.096 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.260 1.260 25 C -0.132 4.132 26 S 0.245 5.755 27 H 0.157 0.843 28 H 0.164 0.836 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.133 0.867 34 H 0.279 0.721 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.168 12.124 -9.070 20.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.079 5.079 2 C -0.035 4.035 3 C -0.271 4.271 4 C -0.104 4.104 5 C -0.111 4.111 6 C -0.352 4.352 7 C 0.307 3.693 8 O -0.273 6.273 9 C -0.275 4.275 10 C -0.001 4.001 11 C -0.052 4.052 12 C -0.194 4.194 13 C -0.103 4.103 14 C -0.223 4.223 15 C 0.105 3.895 16 O -0.125 6.125 17 C -0.463 4.463 18 H 0.123 0.877 19 C -0.140 4.140 20 N -0.520 5.520 21 Si 0.729 3.271 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.151 4.151 26 S 0.513 5.487 27 H 0.175 0.825 28 H 0.182 0.818 29 H 0.149 0.851 30 H 0.154 0.846 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.151 0.849 34 H 0.089 0.911 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.806 13.030 -8.568 21.504 hybrid contribution 0.092 -1.786 0.125 1.793 sum -14.714 11.244 -8.443 20.352 Atomic orbital electron populations 1.81316 1.11093 1.06518 1.08965 1.24277 0.90893 0.94492 0.93791 1.20554 0.89330 1.00084 1.17135 1.20562 0.92216 0.98845 0.98777 1.20688 0.96050 0.96123 0.98231 1.25779 0.99338 0.98453 1.11612 1.19444 0.85313 0.88861 0.75691 1.90950 1.42373 1.59170 1.34818 1.23203 0.98042 0.95730 1.10497 1.22653 0.91636 0.99082 0.86716 1.18402 0.93414 0.95138 0.98263 1.20664 0.93274 1.01681 1.03746 1.20670 0.97899 0.94370 0.97361 1.21423 0.99089 1.01054 1.00728 1.18858 0.93087 0.87402 0.90129 1.83579 1.37694 1.35729 1.55451 1.20752 0.91160 1.11983 1.22406 0.87682 1.24441 0.98215 0.94973 0.96324 1.69646 1.28565 1.19898 1.33868 0.86204 0.82522 0.79519 0.78810 1.19872 1.20848 1.18406 1.20049 0.98048 0.94552 1.02449 1.84093 0.93270 1.06952 1.64362 0.82516 0.81842 0.85145 0.84630 0.87274 0.87026 0.84937 0.91104 0.87253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.78 18.54 41.84 0.78 -4.01 16 2 C 0.28 2.79 15.81 -22.47 -0.36 2.44 16 3 C -0.15 -1.28 6.31 -38.17 -0.24 -1.52 16 4 C -0.07 -0.55 10.11 -40.66 -0.41 -0.96 16 5 C -0.08 -0.79 9.88 -40.67 -0.40 -1.20 16 6 C -0.23 -2.46 6.42 -36.56 -0.23 -2.69 16 7 C 0.43 5.67 6.29 -32.77 -0.21 5.47 16 8 O -0.40 -6.92 12.95 5.05 0.07 -6.85 16 9 C -0.26 -2.74 9.58 -37.46 -0.36 -3.10 16 10 C 0.02 0.21 9.78 -37.12 -0.36 -0.16 16 11 C -0.05 -0.84 4.33 -105.07 -0.46 -1.30 16 12 C -0.17 -2.79 9.79 -39.06 -0.38 -3.18 16 13 C -0.08 -1.50 10.02 -39.67 -0.40 -1.90 16 14 C -0.20 -4.36 9.17 -39.27 -0.36 -4.72 16 15 C 0.16 3.62 6.64 -39.17 -0.26 3.36 16 16 O -0.22 -5.79 8.58 0.03 0.00 -5.79 16 17 C -0.39 -10.89 9.95 30.89 0.31 -10.59 16 18 H 0.11 3.01 5.43 -52.49 -0.28 2.72 16 19 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 20 N -0.88 -25.45 13.96 55.48 0.77 -24.67 16 21 Si 0.90 21.69 28.62 -169.99 -4.86 16.83 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 25 C -0.13 -2.60 6.72 -38.90 -0.26 -2.86 16 26 S 0.24 1.93 22.26 -107.50 -2.39 -0.46 16 27 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 28 H 0.16 1.68 8.04 -52.48 -0.42 1.25 16 29 H 0.13 0.95 7.41 -52.49 -0.39 0.56 16 30 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 31 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.13 2.98 5.62 -52.49 -0.29 2.68 16 34 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.11 2.10 7.47 -52.48 -0.39 1.71 16 LS Contribution 337.03 15.07 5.08 5.08 Total: -1.00 -32.05 337.03 -7.65 -39.70 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -2.61 Total: 1.41 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -4.48 Total: -21.23 kcal Atomic # 7 Polarization: -30.23 SS G_CDS: 1.55 Total: -28.68 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.07 Total: -12.64 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.86 Total: 16.83 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.39 Total: -0.46 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.05 -7.65 -39.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762443077.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.195 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds