Wall clock time and date at job start Tue Mar 31 2020 15:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00246 * 2 1 4 4 H 1.48500 * 109.47131 * 263.33825 * 3 2 1 5 5 H 1.48498 * 109.46904 * 23.33463 * 3 2 1 6 6 H 1.48500 * 109.47152 * 143.33672 * 3 2 1 7 7 C 1.38814 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00088 * 346.51651 * 7 2 1 9 9 N 1.36938 * 120.00074 * 166.51713 * 7 2 1 10 10 C 1.46495 * 120.00005 * 116.35160 * 9 7 2 11 11 N 1.46499 * 109.47711 * 89.99899 * 10 9 7 12 12 N 1.40079 * 126.03871 * 90.02177 * 11 10 9 13 13 C 1.30839 * 108.22404 * 179.97438 * 12 11 10 14 14 C 1.39920 * 108.20624 * 359.97438 * 13 12 11 15 15 Br 1.89109 * 126.04491 * 179.73934 * 14 13 12 16 16 C 1.35017 * 126.03090 * 269.98667 * 11 10 9 17 17 C 1.50697 * 126.13634 * 0.02734 * 16 11 10 18 18 C 1.53003 * 117.49901 * 197.54589 * 17 16 11 19 19 C 1.53004 * 117.49612 * 128.89117 * 17 16 11 20 20 C 1.46504 * 119.99874 * 296.34290 * 9 7 2 21 21 C 1.52999 * 117.49757 * 1.94599 * 20 9 7 22 22 C 1.53000 * 117.50161 * 293.32073 * 20 9 7 23 23 H 0.97004 * 119.99886 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47241 * 329.99159 * 10 9 7 25 25 H 1.09006 * 109.46957 * 209.99534 * 10 9 7 26 26 H 1.08001 * 125.89900 * 180.02562 * 13 12 11 27 27 H 1.08997 * 115.55380 * 343.21642 * 17 16 11 28 28 H 1.09007 * 117.49470 * 0.02562 * 18 17 16 29 29 H 1.08996 * 117.49672 * 145.02151 * 18 17 16 30 30 H 1.09001 * 117.49376 * 214.98359 * 19 17 16 31 31 H 1.08999 * 117.50165 * 359.97438 * 19 17 16 32 32 H 1.09003 * 115.54577 * 147.65198 * 20 9 7 33 33 H 1.08990 * 117.49996 * 359.97438 * 21 20 9 34 34 H 1.09000 * 117.49464 * 145.01807 * 21 20 9 35 35 H 1.08994 * 117.49832 * 214.97775 * 22 20 9 36 36 H 1.08996 * 117.49806 * 0.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6384 1.9652 -1.3906 5 1 1.3844 2.6891 0.5546 6 1 3.4703 1.4848 0.8360 7 6 2.0102 -1.2022 0.0005 8 1 1.4926 -2.1245 0.2190 9 7 3.3513 -1.2186 -0.2760 10 6 4.3049 -1.6536 0.7475 11 7 4.5138 -3.0995 0.6375 12 7 5.4868 -3.7343 -0.1451 13 6 5.3625 -5.0268 0.0165 14 6 4.3078 -5.2566 0.9067 15 35 3.6907 -6.9470 1.4881 16 6 3.8029 -4.0553 1.2730 17 6 2.6538 -3.8258 2.2206 18 6 2.2537 -4.9823 3.1390 19 6 1.3580 -4.5963 1.9593 20 6 3.8323 -0.8014 -1.5954 21 6 2.7912 -0.3149 -2.6055 22 6 3.4603 -1.6781 -2.7928 23 1 -0.4850 0.8401 -0.0004 24 1 3.9101 -1.4177 1.7357 25 1 5.2540 -1.1374 0.6027 26 1 5.9698 -5.7852 -0.4551 27 1 2.5666 -2.8145 2.6178 28 1 2.8220 -5.9090 3.0580 29 1 1.9030 -4.7318 4.1401 30 1 0.4184 -4.0919 2.1848 31 1 1.3365 -5.2688 1.1017 32 1 4.8102 -0.3200 -1.6085 33 1 1.7485 -0.3057 -2.2886 34 1 3.0841 0.4868 -3.2834 35 1 4.1932 -1.7732 -3.5939 36 1 2.8573 -2.5652 -2.5989 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764932104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:59 Heat of formation + Delta-G solvation = 162.186810 kcal Electronic energy + Delta-G solvation = -20477.886357 eV Core-core repulsion = 17433.995523 eV Total energy + Delta-G solvation = -3043.890834 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.049 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.86634 -37.34762 -36.70387 -33.75518 -32.39983 -31.17551 -30.29176 -28.48392 -25.62894 -23.58070 -22.86941 -22.02235 -21.52033 -20.58056 -20.14318 -18.85271 -17.05600 -16.72564 -15.62172 -14.99551 -14.69218 -14.36201 -13.89416 -13.76256 -13.43108 -13.32015 -12.94489 -12.25318 -12.15468 -11.94218 -11.36180 -11.29944 -10.98139 -10.83401 -10.59386 -10.55611 -10.49576 -10.39931 -10.10393 -9.96307 -9.64577 -9.38461 -9.10396 -8.85752 -8.56788 -7.87311 -6.83921 -6.24076 -4.09148 2.04230 2.22240 2.97849 3.18704 3.25447 3.32839 3.35877 4.31301 4.34707 4.63326 4.77450 4.85352 5.06065 5.10965 5.25967 5.39287 5.43162 5.69005 5.76657 5.82408 5.93085 5.96963 6.02248 6.03797 6.21095 6.29679 6.44456 6.46695 6.53490 6.60490 6.84069 6.91475 7.20210 7.46774 7.86536 8.13755 8.33173 8.68043 9.35542 9.79858 10.82944 Molecular weight = 325.05amu Principal moments of inertia in cm(-1) A = 0.020681 B = 0.005144 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.583834 B = 5441.792661 C = 6112.282535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.072 3.928 3 Si 0.884 3.116 4 H -0.268 1.268 5 H -0.299 1.299 6 H -0.272 1.272 7 C -0.305 4.305 8 H 0.077 0.923 9 N -0.549 5.549 10 C 0.359 3.641 11 N -0.345 5.345 12 N -0.289 5.289 13 C 0.065 3.935 14 C -0.263 4.263 15 Br -0.037 7.037 16 C 0.180 3.820 17 C -0.100 4.100 18 C -0.195 4.195 19 C -0.144 4.144 20 C 0.100 3.900 21 C -0.184 4.184 22 C -0.200 4.200 23 H 0.269 0.731 24 H 0.098 0.902 25 H 0.079 0.921 26 H 0.177 0.823 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.044 -9.643 3.984 12.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.134 4.134 3 Si 0.711 3.289 4 H -0.194 1.194 5 H -0.226 1.226 6 H -0.197 1.197 7 C -0.433 4.433 8 H 0.094 0.906 9 N -0.268 5.268 10 C 0.153 3.847 11 N -0.131 5.131 12 N -0.110 5.110 13 C -0.123 4.123 14 C -0.354 4.354 15 Br 0.047 6.953 16 C 0.046 3.954 17 C -0.120 4.120 18 C -0.233 4.233 19 C -0.182 4.182 20 C -0.007 4.007 21 C -0.222 4.222 22 C -0.240 4.240 23 H 0.079 0.921 24 H 0.116 0.884 25 H 0.097 0.903 26 H 0.194 0.806 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.134 0.866 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.289 -8.922 3.589 12.067 hybrid contribution -0.026 0.683 -0.013 0.684 sum 7.262 -8.239 3.576 11.550 Atomic orbital electron populations 1.69836 1.06340 1.27595 1.48065 1.25873 0.94894 0.98646 0.93966 0.86717 0.79794 0.83223 0.79117 1.19361 1.22598 1.19729 1.18584 0.81783 0.93683 1.49261 0.90579 1.44129 1.04051 1.71757 1.06863 1.21546 0.94516 0.74064 0.94574 1.50927 1.22715 1.08174 1.31321 1.77350 1.12056 1.06184 1.15401 1.23510 0.97107 0.94153 0.97544 1.21274 1.08769 0.90158 1.15199 1.96282 1.88740 1.21466 1.88848 1.19975 0.93126 0.87986 0.94300 1.20390 0.93235 0.98485 0.99900 1.23899 1.04096 1.00195 0.95115 1.22881 0.93590 1.01937 0.99750 1.21474 0.95777 1.00683 0.82734 1.23305 1.00963 0.96200 1.01714 1.23196 1.03851 0.95187 1.01760 0.92108 0.88400 0.90304 0.80553 0.86023 0.86199 0.88864 0.88014 0.88613 0.89269 0.86558 0.90610 0.90887 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.28 13.97 55.49 0.78 -23.50 16 2 C 0.07 1.85 3.95 -17.43 -0.07 1.78 16 3 Si 0.88 20.30 25.82 -169.99 -4.39 15.91 16 4 H -0.27 -6.03 6.37 56.52 0.36 -5.67 16 5 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -7.58 8.84 -15.06 -0.13 -7.72 16 8 H 0.08 2.13 7.93 -52.49 -0.42 1.71 16 9 N -0.55 -11.98 2.10 -169.34 -0.36 -12.34 16 10 C 0.36 6.89 6.81 -63.76 -0.43 6.46 16 11 N -0.35 -6.57 3.85 -60.29 -0.23 -6.80 16 12 N -0.29 -5.42 12.57 30.64 0.39 -5.04 16 13 C 0.06 1.07 12.01 -17.34 -0.21 0.87 16 14 C -0.26 -4.42 6.44 -39.98 -0.26 -4.68 16 15 Br -0.04 -0.51 29.10 -68.01 -1.98 -2.49 16 16 C 0.18 3.27 6.61 -82.22 -0.54 2.73 16 17 C -0.10 -1.70 5.84 -91.77 -0.54 -2.23 16 18 C -0.20 -2.77 9.64 -26.69 -0.26 -3.03 16 19 C -0.14 -2.33 9.82 -26.69 -0.26 -2.59 16 20 C 0.10 2.07 5.24 -67.93 -0.36 1.71 16 21 C -0.18 -3.87 7.45 -26.73 -0.20 -4.07 16 22 C -0.20 -4.03 10.38 -26.73 -0.28 -4.31 16 23 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 24 H 0.10 1.80 7.05 -51.93 -0.37 1.43 16 25 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 26 H 0.18 2.35 8.06 -52.49 -0.42 1.93 16 27 H 0.12 2.13 7.24 -51.93 -0.38 1.75 16 28 H 0.12 1.66 4.09 -51.93 -0.21 1.45 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 31 H 0.10 1.61 7.70 -51.93 -0.40 1.22 16 32 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 33 H 0.12 2.82 5.78 -51.93 -0.30 2.52 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.09 1.94 8.14 -51.93 -0.42 1.51 16 LS Contribution 314.10 15.07 4.73 4.73 Total: -1.00 -27.01 314.10 -9.22 -36.23 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -4.63 Total: 8.37 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -3.53 Total: -15.08 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.57 Total: -47.68 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.39 Total: 15.91 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -1.98 Total: -2.49 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.01 -9.22 -36.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764932104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.422 kcal (2) G-P(sol) polarization free energy of solvation -27.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds