Wall clock time and date at job start Tue Mar 31 2020 15:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00246 * 2 1 4 4 H 1.48500 * 109.47131 * 263.33825 * 3 2 1 5 5 H 1.48498 * 109.46904 * 23.33463 * 3 2 1 6 6 H 1.48500 * 109.47152 * 143.33672 * 3 2 1 7 7 C 1.38814 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00088 * 346.51651 * 7 2 1 9 9 N 1.36938 * 120.00074 * 166.51713 * 7 2 1 10 10 C 1.46495 * 120.00005 * 116.35160 * 9 7 2 11 11 N 1.46499 * 109.47711 * 89.99899 * 10 9 7 12 12 N 1.40079 * 126.03871 * 90.02177 * 11 10 9 13 13 C 1.30839 * 108.22404 * 179.97438 * 12 11 10 14 14 C 1.39920 * 108.20624 * 359.97438 * 13 12 11 15 15 Br 1.89109 * 126.04491 * 179.73934 * 14 13 12 16 16 C 1.35017 * 126.03090 * 269.98667 * 11 10 9 17 17 C 1.50697 * 126.13634 * 0.02734 * 16 11 10 18 18 C 1.53003 * 117.49901 * 197.54589 * 17 16 11 19 19 C 1.53004 * 117.49612 * 128.89117 * 17 16 11 20 20 C 1.46504 * 119.99874 * 296.34290 * 9 7 2 21 21 C 1.52999 * 117.49757 * 1.94599 * 20 9 7 22 22 C 1.53000 * 117.50161 * 293.32073 * 20 9 7 23 23 H 0.97004 * 119.99886 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47241 * 329.99159 * 10 9 7 25 25 H 1.09006 * 109.46957 * 209.99534 * 10 9 7 26 26 H 1.08001 * 125.89900 * 180.02562 * 13 12 11 27 27 H 1.08997 * 115.55380 * 343.21642 * 17 16 11 28 28 H 1.09007 * 117.49470 * 0.02562 * 18 17 16 29 29 H 1.08996 * 117.49672 * 145.02151 * 18 17 16 30 30 H 1.09001 * 117.49376 * 214.98359 * 19 17 16 31 31 H 1.08999 * 117.50165 * 359.97438 * 19 17 16 32 32 H 1.09003 * 115.54577 * 147.65198 * 20 9 7 33 33 H 1.08990 * 117.49996 * 359.97438 * 21 20 9 34 34 H 1.09000 * 117.49464 * 145.01807 * 21 20 9 35 35 H 1.08994 * 117.49832 * 214.97775 * 22 20 9 36 36 H 1.08996 * 117.49806 * 0.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6384 1.9652 -1.3906 5 1 1.3844 2.6891 0.5546 6 1 3.4703 1.4848 0.8360 7 6 2.0102 -1.2022 0.0005 8 1 1.4926 -2.1245 0.2190 9 7 3.3513 -1.2186 -0.2760 10 6 4.3049 -1.6536 0.7475 11 7 4.5138 -3.0995 0.6375 12 7 5.4868 -3.7343 -0.1451 13 6 5.3625 -5.0268 0.0165 14 6 4.3078 -5.2566 0.9067 15 35 3.6907 -6.9470 1.4881 16 6 3.8029 -4.0553 1.2730 17 6 2.6538 -3.8258 2.2206 18 6 2.2537 -4.9823 3.1390 19 6 1.3580 -4.5963 1.9593 20 6 3.8323 -0.8014 -1.5954 21 6 2.7912 -0.3149 -2.6055 22 6 3.4603 -1.6781 -2.7928 23 1 -0.4850 0.8401 -0.0004 24 1 3.9101 -1.4177 1.7357 25 1 5.2540 -1.1374 0.6027 26 1 5.9698 -5.7852 -0.4551 27 1 2.5666 -2.8145 2.6178 28 1 2.8220 -5.9090 3.0580 29 1 1.9030 -4.7318 4.1401 30 1 0.4184 -4.0919 2.1848 31 1 1.3365 -5.2688 1.1017 32 1 4.8102 -0.3200 -1.6085 33 1 1.7485 -0.3057 -2.2886 34 1 3.0841 0.4868 -3.2834 35 1 4.1932 -1.7732 -3.5939 36 1 2.8573 -2.5652 -2.5989 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764932104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:58 Heat of formation + Delta-G solvation = 149.113289 kcal Electronic energy + Delta-G solvation = -20478.453268 eV Core-core repulsion = 17433.995523 eV Total energy + Delta-G solvation = -3044.457745 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.049 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.23565 -39.02429 -38.00415 -35.34774 -34.24536 -32.57420 -31.78250 -29.87445 -27.30313 -25.25021 -24.21429 -23.28960 -23.16930 -22.00430 -21.82635 -20.26354 -18.78505 -18.24462 -17.21144 -16.80317 -16.08543 -15.77339 -15.41995 -15.26610 -15.01931 -14.73045 -14.46283 -13.99486 -13.57563 -13.39463 -13.08650 -12.75257 -12.64419 -12.44871 -12.24682 -11.98083 -11.85726 -11.79639 -11.74424 -11.42575 -11.26585 -11.02890 -10.64224 -10.31153 -10.11850 -9.20126 -8.62610 -8.20137 -6.08011 0.71927 0.84996 1.42204 1.45097 1.53203 1.66477 1.84392 2.42508 2.93188 3.02469 3.08648 3.31099 3.52139 3.69990 3.96314 4.06160 4.14958 4.16293 4.25283 4.34309 4.37103 4.46532 4.54565 4.80232 4.84464 4.86781 4.88997 5.01863 5.21836 5.24031 5.30006 5.47944 5.55122 5.88995 6.06889 6.35057 6.74534 6.91371 7.39755 7.91476 8.88167 Molecular weight = 325.05amu Principal moments of inertia in cm(-1) A = 0.020681 B = 0.005144 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.583834 B = 5441.792661 C = 6112.282535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.033 3.967 3 Si 0.936 3.064 4 H -0.256 1.256 5 H -0.309 1.309 6 H -0.258 1.258 7 C -0.284 4.284 8 H 0.033 0.967 9 N -0.561 5.561 10 C 0.361 3.639 11 N -0.359 5.359 12 N -0.309 5.309 13 C 0.069 3.931 14 C -0.270 4.270 15 Br -0.009 7.009 16 C 0.165 3.835 17 C -0.118 4.118 18 C -0.163 4.163 19 C -0.153 4.153 20 C 0.095 3.905 21 C -0.189 4.189 22 C -0.189 4.189 23 H 0.267 0.733 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.209 0.791 27 H 0.109 0.891 28 H 0.127 0.873 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.305 -10.056 4.051 14.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.168 4.168 3 Si 0.762 3.238 4 H -0.181 1.181 5 H -0.237 1.237 6 H -0.182 1.182 7 C -0.413 4.413 8 H 0.051 0.949 9 N -0.280 5.280 10 C 0.155 3.845 11 N -0.145 5.145 12 N -0.130 5.130 13 C -0.119 4.119 14 C -0.361 4.361 15 Br 0.075 6.925 16 C 0.032 3.968 17 C -0.138 4.138 18 C -0.201 4.201 19 C -0.191 4.191 20 C -0.011 4.011 21 C -0.226 4.226 22 C -0.229 4.229 23 H 0.076 0.924 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.226 0.774 27 H 0.127 0.873 28 H 0.145 0.855 29 H 0.134 0.866 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.135 0.865 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.584 -9.367 3.663 13.893 hybrid contribution -0.737 0.607 -0.035 0.955 sum 8.847 -8.761 3.628 12.968 Atomic orbital electron populations 1.69952 1.08036 1.28102 1.50721 1.26373 0.95160 1.01440 0.93873 0.85874 0.78871 0.79315 0.79779 1.18087 1.23733 1.18193 1.18189 0.83211 0.91975 1.47965 0.94922 1.44157 1.03230 1.72584 1.08070 1.21594 0.94686 0.74277 0.93905 1.50644 1.23497 1.08145 1.32183 1.77297 1.12461 1.07212 1.15992 1.24073 0.96891 0.94120 0.96782 1.21520 1.08548 0.91131 1.14902 1.96295 1.88551 1.19077 1.88581 1.20270 0.93404 0.88544 0.94617 1.20409 0.93352 0.98856 1.01156 1.23976 1.01829 0.99030 0.95268 1.22821 0.93375 1.02122 1.00814 1.21729 0.96606 1.00732 0.82031 1.23206 0.99101 0.97574 1.02758 1.23102 1.03724 0.93486 1.02638 0.92353 0.88317 0.88179 0.77401 0.87296 0.85522 0.86614 0.88674 0.89508 0.86457 0.90252 0.88033 0.87916 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.09 13.97 21.65 0.30 -52.79 16 2 C 0.03 1.73 3.95 84.86 0.34 2.06 16 3 Si 0.94 41.52 25.82 68.60 1.77 43.29 16 4 H -0.26 -10.79 6.37 99.48 0.63 -10.16 16 5 H -0.31 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.28 -14.51 8.84 84.03 0.74 -13.76 16 8 H 0.03 1.95 7.93 -2.91 -0.02 1.92 16 9 N -0.56 -24.16 2.10 -689.68 -1.45 -25.61 16 10 C 0.36 13.49 6.81 170.96 1.16 14.66 16 11 N -0.36 -13.36 3.85 -344.65 -1.33 -14.69 16 12 N -0.31 -11.08 12.57 -56.99 -0.72 -11.79 16 13 C 0.07 2.15 12.01 85.25 1.02 3.18 16 14 C -0.27 -8.69 6.44 22.01 0.14 -8.55 16 15 Br -0.01 -0.22 29.10 -20.37 -0.59 -0.81 16 16 C 0.17 5.91 6.61 41.40 0.27 6.19 16 17 C -0.12 -4.01 5.84 -11.54 -0.07 -4.07 16 18 C -0.16 -4.43 9.64 30.62 0.30 -4.13 16 19 C -0.15 -5.04 9.82 30.62 0.30 -4.74 16 20 C 0.10 3.76 5.24 44.99 0.24 4.00 16 21 C -0.19 -7.69 7.45 30.60 0.23 -7.46 16 22 C -0.19 -7.40 10.38 30.60 0.32 -7.08 16 23 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 24 H 0.10 3.59 7.05 -2.39 -0.02 3.58 16 25 H 0.10 3.29 8.07 -2.38 -0.02 3.27 16 26 H 0.21 4.91 8.06 -2.91 -0.02 4.88 16 27 H 0.11 3.93 7.24 -2.39 -0.02 3.91 16 28 H 0.13 3.26 4.09 -2.38 -0.01 3.25 16 29 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 31 H 0.09 2.98 7.70 -2.39 -0.02 2.96 16 32 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 33 H 0.08 3.89 5.78 -2.39 -0.01 3.88 16 34 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 35 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 36 H 0.05 2.45 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -59.14 314.10 4.00 -55.14 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 1.02 Total: 26.98 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 4.99 Total: -19.72 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -3.19 Total: -104.88 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.77 Total: 43.29 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -0.59 Total: -0.81 kcal Total: -59.14 4.00 -55.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764932104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.255 kcal (2) G-P(sol) polarization free energy of solvation -59.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds