Wall clock time and date at job start Tue Mar 31 2020 13:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38161 * 120.02077 * 2 1 4 4 C 1.38327 * 120.04623 * 180.02562 * 3 2 1 5 5 Br 1.89101 * 119.95734 * 179.97438 * 4 3 2 6 6 C 1.38372 * 120.08856 * 0.02562 * 4 3 2 7 7 C 1.38121 * 120.04485 * 359.95219 * 6 4 3 8 8 C 1.50701 * 120.01967 * 179.97438 * 7 6 4 9 9 N 1.46903 * 109.47152 * 259.99855 * 8 7 6 10 10 C 1.47477 * 111.00005 * 265.97615 * 9 8 7 11 11 C 1.53511 * 87.92781 * 221.29733 * 10 9 8 12 12 C 1.50706 * 114.34333 * 139.68554 * 11 10 9 13 13 H 1.08000 * 119.99556 * 266.07135 * 12 11 10 14 14 C 1.37878 * 120.00239 * 86.07026 * 12 11 10 15 15 N 1.31516 * 120.00041 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99947 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47070 * 90.00245 * 16 14 12 18 18 H 1.48504 * 109.47102 * 210.00329 * 16 14 12 19 19 H 1.48495 * 109.47526 * 330.00050 * 16 14 12 20 20 C 1.47473 * 110.99920 * 169.99991 * 9 8 7 21 21 C 1.38705 * 120.02409 * 179.72734 * 2 1 3 22 22 O 1.35912 * 120.04268 * 359.97438 * 21 2 1 23 23 H 1.09002 * 109.47152 * 89.99894 * 1 2 3 24 24 H 1.09001 * 109.46980 * 329.99994 * 1 2 3 25 25 H 1.09004 * 109.47113 * 209.99975 * 1 2 3 26 26 H 1.07999 * 119.98080 * 0.02562 * 3 2 1 27 27 H 1.07992 * 119.97438 * 179.97438 * 6 4 3 28 28 H 1.08996 * 109.47305 * 20.00274 * 8 7 6 29 29 H 1.08999 * 109.46711 * 139.99853 * 8 7 6 30 30 H 1.09001 * 113.47565 * 336.05725 * 10 9 8 31 31 H 1.09001 * 113.48216 * 106.53030 * 10 9 8 32 32 H 1.09005 * 114.16818 * 272.37223 * 11 10 9 33 33 H 0.96998 * 120.00013 * 179.97438 * 15 14 12 34 34 H 1.08992 * 113.47873 * 253.47205 * 20 9 8 35 35 H 1.09008 * 113.47916 * 23.87933 * 20 9 8 36 36 H 0.96699 * 114.00124 * 90.00728 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5815 1.1969 -0.0005 5 35 4.5251 2.8357 -0.0013 6 6 4.2758 -0.0001 -0.0016 7 6 3.5885 -1.1982 -0.0011 8 6 4.3452 -2.5014 -0.0029 9 7 4.3810 -3.0451 -1.3672 10 6 3.2751 -3.9958 -1.5864 11 6 4.2683 -4.8908 -2.3410 12 6 4.1137 -6.3636 -2.0614 13 1 4.7096 -6.8326 -1.2924 14 6 3.2116 -7.1122 -2.7872 15 7 2.4864 -6.5412 -3.7240 16 14 3.0207 -8.9379 -2.4410 17 1 1.9756 -9.1386 -1.4053 18 1 2.6229 -9.6392 -3.6881 19 1 4.3116 -9.4872 -1.9545 20 6 5.3078 -4.1887 -1.4562 21 6 2.2011 -1.2009 0.0057 22 8 1.5229 -2.3787 0.0118 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5138 26 1 1.6583 2.1316 0.0004 27 1 5.3557 0.0025 -0.0024 28 1 5.3632 -2.3310 0.3472 29 1 3.8477 -3.2112 0.6581 30 1 2.8990 -4.4439 -0.6668 31 1 2.4806 -3.5996 -2.2187 32 1 4.3580 -4.6615 -3.4028 33 1 1.8520 -7.0679 -4.2348 34 1 6.2359 -3.9558 -1.9781 35 1 5.4749 -4.6876 -0.5015 36 1 1.3264 -2.7240 -0.8697 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826991066.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:04 Heat of formation + Delta-G solvation = -5.602359 kcal Electronic energy + Delta-G solvation = -19533.318870 eV Core-core repulsion = 16449.859400 eV Total energy + Delta-G solvation = -3083.459470 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.49844 -40.18503 -37.74614 -35.07760 -34.20030 -33.20507 -30.95978 -29.53100 -27.84530 -27.34121 -26.59509 -24.54352 -22.57978 -21.76664 -20.52781 -19.31786 -18.57547 -17.38572 -17.11911 -16.71466 -16.14069 -15.98844 -15.58287 -15.22988 -14.86184 -14.32195 -14.15630 -13.93768 -13.54001 -13.40971 -13.32678 -13.14267 -13.07495 -12.84678 -12.46099 -12.44026 -12.10003 -11.70538 -11.53722 -11.40710 -11.26587 -11.14600 -10.87096 -10.48732 -9.84328 -9.64663 -9.41762 -8.14490 -6.24962 -0.04955 0.18411 0.58240 1.43173 1.44812 1.54329 2.33750 2.43751 3.14914 3.22819 3.37418 3.63458 3.72753 4.03212 4.11390 4.23486 4.30666 4.45011 4.47382 4.61649 4.64858 4.75292 4.78545 4.82456 4.85463 4.94760 5.07626 5.13166 5.19898 5.24860 5.34989 5.55112 5.63041 5.64573 5.86090 6.29480 6.34499 6.62708 6.83594 7.43425 8.94961 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.025261 B = 0.003120 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.155745 B = 8971.712981 C = 9716.192922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.111 4.111 3 C -0.080 4.080 4 C -0.102 4.102 5 Br -0.041 7.041 6 C -0.075 4.075 7 C -0.095 4.095 8 C 0.063 3.937 9 N -0.476 5.476 10 C 0.023 3.977 11 C 0.021 3.979 12 C -0.530 4.530 13 H 0.057 0.943 14 C 0.019 3.981 15 N -0.919 5.919 16 Si 0.953 3.047 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.267 1.267 20 C 0.008 3.992 21 C 0.114 3.886 22 O -0.502 6.502 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.157 0.843 27 H 0.142 0.858 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.030 0.970 33 H 0.263 0.737 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.442 19.291 8.969 21.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.112 4.112 3 C -0.100 4.100 4 C -0.182 4.182 5 Br 0.044 6.956 6 C -0.096 4.096 7 C -0.097 4.097 8 C -0.065 4.065 9 N -0.199 5.199 10 C -0.106 4.106 11 C 0.002 3.998 12 C -0.568 4.568 13 H 0.075 0.925 14 C -0.180 4.180 15 N -0.557 5.557 16 Si 0.779 3.221 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.192 1.192 20 C -0.121 4.121 21 C 0.069 3.931 22 O -0.315 6.315 23 H 0.098 0.902 24 H 0.108 0.892 25 H 0.087 0.913 26 H 0.175 0.825 27 H 0.159 0.841 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -0.094 20.532 9.034 22.432 hybrid contribution -0.471 -2.212 -0.025 2.262 sum -0.565 18.320 9.009 20.423 Atomic orbital electron populations 1.20732 0.88390 1.03999 1.03366 1.20439 0.98283 0.91430 1.01077 1.21094 0.91715 0.98646 0.98571 1.21811 0.95096 0.91891 1.09374 1.96684 1.75362 1.25717 1.97791 1.20944 1.00632 0.89683 0.98293 1.20109 0.93232 0.95313 1.01021 1.21488 0.99927 0.93238 0.91830 1.68894 1.06282 1.21754 1.22926 1.23847 0.95043 0.92565 0.99169 1.20043 0.92362 0.93279 0.94160 1.21348 1.21893 0.94381 1.19214 0.92467 1.25745 0.95368 1.02483 0.94443 1.70070 1.24967 1.37623 1.23069 0.85628 0.78610 0.80304 0.77557 1.20082 1.21003 1.19181 1.23857 0.97398 0.90977 0.99835 1.18505 0.89497 0.85826 0.99313 1.84712 1.76057 1.35932 1.34788 0.90190 0.89236 0.91310 0.82511 0.84059 0.89238 0.93209 0.92531 0.93049 0.95136 0.92849 0.90747 0.91977 0.74326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 9.80 71.24 0.70 -1.35 16 2 C -0.11 -2.70 5.89 -19.77 -0.12 -2.81 16 3 C -0.08 -1.77 9.44 22.27 0.21 -1.56 16 4 C -0.10 -2.42 6.22 22.32 0.14 -2.28 16 5 Br -0.04 -0.82 33.70 -20.37 -0.69 -1.51 16 6 C -0.08 -1.99 9.40 22.27 0.21 -1.78 16 7 C -0.09 -2.85 5.48 -19.77 -0.11 -2.96 16 8 C 0.06 2.06 4.71 85.56 0.40 2.46 16 9 N -0.48 -18.21 6.32 -932.55 -5.89 -24.10 16 10 C 0.02 0.98 5.34 83.58 0.45 1.43 16 11 C 0.02 1.02 3.76 -11.20 -0.04 0.97 16 12 C -0.53 -28.29 8.83 25.60 0.23 -28.07 16 13 H 0.06 2.98 7.81 -2.91 -0.02 2.96 16 14 C 0.02 1.04 5.46 84.65 0.46 1.50 16 15 N -0.92 -52.22 13.26 21.45 0.28 -51.94 16 16 Si 0.95 42.40 29.54 68.60 2.03 44.42 16 17 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 C 0.01 0.32 7.24 83.58 0.61 0.92 16 21 C 0.11 3.37 6.64 22.50 0.15 3.52 16 22 O -0.50 -15.58 10.67 -92.56 -0.99 -16.57 16 23 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.09 1.27 8.09 -2.39 -0.02 1.25 16 25 H 0.07 1.42 7.52 -2.38 -0.02 1.40 16 26 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 27 H 0.14 3.39 8.04 -2.91 -0.02 3.36 16 28 H 0.09 2.58 7.94 -2.39 -0.02 2.56 16 29 H 0.05 1.73 7.01 -2.39 -0.02 1.71 16 30 H 0.06 2.50 7.09 -2.39 -0.02 2.48 16 31 H 0.05 2.26 7.21 -2.39 -0.02 2.24 16 32 H 0.03 1.69 8.11 -2.38 -0.02 1.67 16 33 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 34 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 35 H 0.06 2.42 7.87 -2.38 -0.02 2.40 16 36 H 0.40 11.81 6.89 -74.06 -0.51 11.30 16 Total: -1.00 -58.65 319.24 -1.38 -60.04 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.59 Total: 19.64 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 3.28 Total: -29.99 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -5.60 Total: -76.03 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.99 Total: -16.57 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 35 Polarization: -0.82 SS G_CDS: -0.69 Total: -1.51 kcal Total: -58.65 -1.38 -60.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826991066.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.433 kcal (2) G-P(sol) polarization free energy of solvation -58.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds