Wall clock time and date at job start Tue Mar 31 2020 15:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00217 * 2 1 4 4 H 1.48500 * 109.47259 * 269.99861 * 3 2 1 5 5 H 1.48506 * 109.46973 * 29.99796 * 3 2 1 6 6 H 1.48500 * 109.47152 * 149.99553 * 3 2 1 7 7 C 1.38700 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99858 * 0.02562 * 7 2 1 9 9 O 1.34818 * 120.00127 * 180.02562 * 7 2 1 10 10 C 1.35519 * 117.00041 * 185.05465 * 9 7 2 11 11 C 1.38831 * 120.16250 * 354.39708 * 10 9 7 12 12 C 1.38025 * 120.07212 * 180.02562 * 11 10 9 13 13 C 1.38571 * 120.40289 * 359.97438 * 12 11 10 14 14 C 1.37826 * 120.32200 * 0.02562 * 13 12 11 15 15 C 1.39666 * 119.92253 * 0.02562 * 14 13 12 16 16 C 1.47535 * 120.19990 * 179.97438 * 15 14 13 17 17 O 1.21600 * 119.99609 * 179.97438 * 16 15 14 18 18 N 1.34774 * 120.00224 * 359.97438 * 16 15 14 19 19 C 1.46496 * 120.00228 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.47258 * 179.97438 * 19 18 16 21 21 S 1.82851 * 110.31273 * 57.19616 * 20 19 18 22 22 C 1.83116 * 99.46428 * 217.18157 * 21 20 19 23 23 C 1.54486 * 105.03980 * 44.18097 * 22 21 20 24 24 S 1.82121 * 106.98726 * 313.67683 * 23 22 21 25 25 H 0.96995 * 119.99947 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.96214 * 0.02562 * 11 10 9 27 27 H 1.07999 * 119.80167 * 179.69806 * 12 11 10 28 28 H 1.08001 * 119.84330 * 179.97438 * 13 12 11 29 29 H 1.08002 * 120.04050 * 179.97438 * 14 13 12 30 30 H 0.97004 * 119.99466 * 359.97438 * 18 16 15 31 31 H 1.09002 * 109.46969 * 299.99825 * 19 18 16 32 32 H 1.08999 * 109.47243 * 59.99455 * 19 18 16 33 33 H 1.09001 * 110.27933 * 179.29326 * 20 19 18 34 34 H 1.09003 * 110.25851 * 285.30708 * 22 21 20 35 35 H 1.08997 * 110.43948 * 163.15176 * 22 21 20 36 36 H 1.08999 * 109.95996 * 194.28808 * 23 22 21 37 37 H 1.09005 * 109.98846 * 73.07487 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0086 -1.2012 0.0005 8 1 1.4686 -2.1365 0.0005 9 8 3.3568 -1.2013 0.0011 10 6 3.9720 -2.4041 -0.1048 11 6 3.2243 -3.5737 -0.0907 12 6 3.8529 -4.7978 -0.1981 13 6 5.2312 -4.8700 -0.3212 14 6 5.9896 -3.7192 -0.3371 15 6 5.3676 -2.4734 -0.2282 16 6 6.1735 -1.2377 -0.2440 17 8 5.6281 -0.1550 -0.1494 18 7 7.5141 -1.3089 -0.3632 19 6 8.3143 -0.0820 -0.3783 20 6 9.7948 -0.4404 -0.5216 21 16 10.0649 -1.4283 -2.0364 22 6 11.3486 -2.5796 -1.4200 23 6 10.8537 -3.0223 -0.0252 24 16 10.3213 -1.5180 0.8526 25 1 -0.4850 0.8400 -0.0004 26 1 2.1495 -3.5257 0.0045 27 1 3.2673 -5.7052 -0.1817 28 1 5.7137 -5.8326 -0.4042 29 1 7.0636 -3.7808 -0.4328 30 1 7.9491 -2.1727 -0.4382 31 1 8.0080 0.5413 -1.2184 32 1 8.1614 0.4631 0.5532 33 1 10.4019 0.4646 -0.5469 34 1 12.3070 -2.0669 -1.3370 35 1 11.4367 -3.4411 -2.0819 36 1 11.6641 -3.5048 0.5213 37 1 10.0140 -3.7096 -0.1286 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856166153.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:08 Heat of formation + Delta-G solvation = -21.965545 kcal Electronic energy + Delta-G solvation = -22775.957430 eV Core-core repulsion = 19351.012662 eV Total energy + Delta-G solvation = -3424.944768 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.059 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.75994 -38.30301 -36.50028 -35.08263 -33.58709 -32.42853 -31.42671 -29.68015 -29.17236 -25.33104 -24.35203 -24.06335 -22.69448 -21.20668 -20.17695 -18.01846 -17.87089 -17.33024 -17.05233 -16.46540 -15.95149 -15.53305 -14.80266 -14.67110 -14.44215 -14.29679 -14.10729 -13.89450 -13.72674 -13.53869 -13.12097 -12.95517 -12.80216 -12.32896 -12.21017 -12.12083 -11.81537 -11.35693 -11.26277 -11.23992 -10.80920 -10.69819 -10.08485 -10.02527 -9.60065 -9.04971 -8.86812 -8.76640 -8.36356 -8.30044 -8.20144 -7.45131 -6.44849 -4.09737 0.69786 1.09702 1.29805 1.60724 2.19848 2.21596 3.33559 3.40110 3.51756 3.60810 3.68761 3.89109 4.16567 4.30654 4.38027 4.55092 4.70916 4.76534 4.78817 4.91546 5.09030 5.11573 5.33135 5.41351 5.44608 5.60348 5.70391 5.97392 6.06567 6.40376 6.57271 6.73207 6.85621 7.03179 7.17122 7.50545 7.70049 7.96602 7.98056 8.87794 8.92112 9.54477 10.60353 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.016188 B = 0.004003 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.221102 B = 6993.069411 C = 8206.815461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.072 3.928 3 Si 0.900 3.100 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.238 1.238 7 C -0.396 4.396 8 H 0.108 0.892 9 O -0.166 6.166 10 C 0.202 3.798 11 C -0.227 4.227 12 C -0.051 4.051 13 C -0.221 4.221 14 C -0.038 4.038 15 C -0.223 4.223 16 C 0.563 3.437 17 O -0.520 6.520 18 N -0.729 5.729 19 C 0.151 3.849 20 C -0.030 4.030 21 S -0.228 6.228 22 C -0.088 4.088 23 C -0.091 4.091 24 S -0.235 6.235 25 H 0.281 0.719 26 H 0.138 0.862 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.397 0.603 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.137 0.863 34 H 0.102 0.898 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.306 -7.317 -1.684 24.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.134 4.134 3 Si 0.725 3.275 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.161 1.161 7 C -0.471 4.471 8 H 0.125 0.875 9 O -0.066 6.066 10 C 0.144 3.856 11 C -0.246 4.246 12 C -0.069 4.069 13 C -0.240 4.240 14 C -0.057 4.057 15 C -0.228 4.228 16 C 0.353 3.647 17 O -0.396 6.396 18 N -0.386 5.386 19 C 0.023 3.977 20 C -0.269 4.269 21 S -0.002 6.002 22 C -0.239 4.239 23 C -0.242 4.242 24 S -0.009 6.009 25 H 0.091 0.909 26 H 0.156 0.844 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.234 0.766 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.155 0.845 34 H 0.120 0.880 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 22.263 -5.799 -1.529 23.056 hybrid contribution 0.974 -0.176 -0.229 1.016 sum 23.237 -5.975 -1.758 24.057 Atomic orbital electron populations 1.69638 1.05811 1.28917 1.46255 1.24486 0.94955 0.99284 0.94630 0.86201 0.81312 0.80432 0.79574 1.19970 1.21286 1.16084 1.20930 0.77154 0.96750 1.52289 0.87457 1.83783 1.22044 1.24936 1.75795 1.19017 0.90266 0.85822 0.90493 1.21278 1.01351 0.91647 1.10338 1.20954 0.94359 0.96751 0.94872 1.20519 0.94003 0.97247 1.12262 1.20728 0.97967 0.91318 0.95681 1.18807 0.91109 0.92787 1.20080 1.18159 0.80884 0.89459 0.76166 1.90858 1.71034 1.29327 1.48420 1.45836 1.06593 1.08358 1.77822 1.20951 0.84423 0.88742 1.03560 1.26128 1.03860 1.03337 0.93529 1.88109 1.51513 1.40554 1.20025 1.24549 1.00336 1.01313 0.97651 1.24445 1.05349 0.98205 0.96199 1.87519 1.83716 1.14131 1.15582 0.90859 0.84431 0.86860 0.87073 0.87120 0.76592 0.89768 0.89388 0.84548 0.87955 0.85454 0.85969 0.87716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.49 13.96 55.48 0.77 -24.72 16 2 C 0.07 2.08 5.49 -17.52 -0.10 1.99 16 3 Si 0.90 23.43 28.62 -169.99 -4.86 18.56 16 4 H -0.27 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.24 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.40 -11.43 9.95 30.90 0.31 -11.12 16 8 H 0.11 3.08 5.44 -52.48 -0.29 2.79 16 9 O -0.17 -4.60 6.67 -21.06 -0.14 -4.74 16 10 C 0.20 4.82 6.66 -38.60 -0.26 4.56 16 11 C -0.23 -4.83 9.16 -39.44 -0.36 -5.19 16 12 C -0.05 -0.87 10.03 -39.54 -0.40 -1.27 16 13 C -0.22 -3.45 10.02 -39.61 -0.40 -3.84 16 14 C -0.04 -0.62 9.53 -39.20 -0.37 -0.99 16 15 C -0.22 -4.60 5.89 -104.81 -0.62 -5.22 16 16 C 0.56 11.58 7.76 -12.47 -0.10 11.49 16 17 O -0.52 -13.02 15.17 -16.58 -0.25 -13.27 16 18 N -0.73 -11.13 4.94 -61.35 -0.30 -11.43 16 19 C 0.15 1.99 5.42 -4.04 -0.02 1.96 16 20 C -0.03 -0.29 3.87 37.16 0.14 -0.15 16 21 S -0.23 -2.16 21.40 -104.32 -2.23 -4.39 16 22 C -0.09 -0.50 7.05 37.94 0.27 -0.23 16 23 C -0.09 -0.55 6.85 37.94 0.26 -0.29 16 24 S -0.23 -2.23 21.48 -104.32 -2.24 -4.47 16 25 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.14 3.03 5.64 -52.48 -0.30 2.74 16 27 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.11 1.41 6.40 -52.49 -0.34 1.07 16 30 H 0.40 5.18 5.37 -40.82 -0.22 4.96 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.14 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -33.68 335.49 -9.92 -43.60 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -4.08 Total: 4.12 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -1.64 Total: -8.31 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.47 Total: -36.15 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.39 Total: -18.01 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -4.86 Total: 18.56 kcal Atomic # 16 Polarization: -4.39 SS G_CDS: -4.47 Total: -8.86 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.68 -9.92 -43.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856166153.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.636 kcal (2) G-P(sol) polarization free energy of solvation -33.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds