Wall clock time and date at job start Tue Mar 31 2020 14:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47212 * 2 1 4 4 H 1.08999 * 109.47107 * 305.69880 * 3 2 1 5 5 C 1.50700 * 109.47328 * 65.69376 * 3 2 1 6 6 O 1.21293 * 119.99856 * 23.44626 * 5 3 2 7 7 N 1.34775 * 120.00422 * 203.44929 * 5 3 2 8 8 C 1.46498 * 119.99729 * 4.72870 * 7 5 3 9 9 C 1.37100 * 120.00266 * 184.46434 * 7 5 3 10 10 H 1.08005 * 120.00017 * 9.98086 * 9 7 5 11 11 C 1.38945 * 119.99992 * 189.98674 * 9 7 5 12 12 N 1.31412 * 120.00275 * 354.27514 * 11 9 7 13 13 Si 1.86804 * 119.99967 * 174.27976 * 11 9 7 14 14 H 1.48497 * 109.47323 * 59.99545 * 13 11 9 15 15 H 1.48497 * 109.47370 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47037 * 299.99747 * 13 11 9 17 17 C 1.50695 * 109.47442 * 185.69826 * 3 2 1 18 18 C 1.38244 * 119.98479 * 299.72169 * 17 3 2 19 19 C 1.38221 * 120.00635 * 179.76437 * 18 17 3 20 20 C 1.38329 * 119.98830 * 0.51390 * 19 18 17 21 21 Br 1.89103 * 120.00851 * 179.76540 * 20 19 18 22 22 C 1.38318 * 119.97952 * 359.74207 * 20 19 18 23 23 C 1.38215 * 119.99449 * 359.97438 * 22 20 19 24 24 H 1.08998 * 109.47030 * 304.54444 * 1 2 3 25 25 H 1.09004 * 109.46643 * 64.54102 * 1 2 3 26 26 H 1.09001 * 109.46843 * 184.53789 * 1 2 3 27 27 H 1.08994 * 109.47232 * 239.99709 * 2 1 3 28 28 H 1.09000 * 109.46869 * 119.99521 * 2 1 3 29 29 H 1.08991 * 109.47329 * 234.36721 * 8 7 5 30 30 H 1.08994 * 109.47181 * 354.37609 * 8 7 5 31 31 H 1.09010 * 109.46660 * 114.37592 * 8 7 5 32 32 H 0.97000 * 120.00214 * 180.02562 * 12 11 9 33 33 H 1.07996 * 120.00102 * 0.02562 * 18 17 3 34 34 H 1.08003 * 120.00238 * 180.23189 * 19 18 17 35 35 H 1.08008 * 120.00647 * 179.97438 * 22 20 19 36 36 H 1.07997 * 120.00226 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 1.6562 2.1111 1.2949 6 8 1.4333 1.4406 2.2808 7 7 1.5605 3.4540 1.3575 8 6 1.7276 4.2575 0.1440 9 6 1.3013 4.0677 2.5557 10 1 1.3333 3.4976 3.4725 11 6 0.9973 5.4230 2.5907 12 7 1.0679 6.1409 1.4922 13 14 0.4882 6.2248 4.1993 14 1 1.5809 6.0764 5.1939 15 1 0.2205 7.6674 3.9703 16 1 -0.7409 5.5682 4.7125 17 6 3.5404 1.4449 -0.1411 18 6 4.3247 0.8182 0.8094 19 6 5.7007 0.8160 0.6778 20 6 6.2933 1.4500 -0.3993 21 35 8.1760 1.4529 -0.5763 22 6 5.5084 2.0814 -1.3471 23 6 4.1323 2.0781 -1.2180 24 1 -0.3633 0.5827 0.8465 25 1 -0.3633 0.4418 -0.9279 26 1 -0.3633 -1.0245 0.0813 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.5010 5.0076 0.3086 30 1 2.0193 3.6103 -0.6831 31 1 0.7867 4.7526 -0.0963 32 1 0.8561 7.0871 1.5167 33 1 3.8622 0.3268 1.6525 34 1 6.3132 0.3231 1.4184 35 1 5.9707 2.5769 -2.1882 36 1 3.5192 2.5707 -1.9582 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858933487.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:25 Heat of formation + Delta-G solvation = -18.165167 kcal Electronic energy + Delta-G solvation = -20009.320683 eV Core-core repulsion = 16925.316449 eV Total energy + Delta-G solvation = -3084.004234 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.29042 -39.66054 -36.91076 -35.64678 -33.55523 -32.99598 -32.03731 -30.75435 -28.55484 -27.48926 -26.02679 -23.98981 -23.09943 -22.64460 -20.03116 -18.91757 -18.21106 -17.74577 -16.67195 -16.38686 -15.97525 -15.89297 -15.62227 -14.90716 -14.60135 -14.53908 -14.42034 -14.00966 -13.67593 -13.44762 -13.10684 -12.96506 -12.80071 -12.70721 -12.40159 -12.31328 -12.16704 -11.99727 -11.85604 -11.64874 -11.50617 -11.25755 -10.99805 -10.33727 -9.98741 -9.82451 -9.48261 -8.23290 -5.88835 0.06407 0.34396 0.61869 1.37179 1.39344 1.49315 2.04862 2.25426 2.60925 3.10073 3.13649 3.74693 3.76949 3.95534 4.04800 4.08279 4.23339 4.41320 4.42525 4.57951 4.58734 4.74831 4.79169 4.93663 5.00318 5.10359 5.20417 5.20651 5.24600 5.33849 5.43722 5.45825 5.52236 5.60898 5.82361 6.07056 6.50326 7.19325 7.53601 8.07471 8.67970 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.014505 B = 0.004110 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.958080 B = 6811.430726 C = 7947.133594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.058 4.058 4 H 0.108 0.892 5 C 0.447 3.553 6 O -0.628 6.628 7 N -0.463 5.463 8 C 0.127 3.873 9 C -0.338 4.338 10 H 0.073 0.927 11 C -0.003 4.003 12 N -0.896 5.896 13 Si 0.986 3.014 14 H -0.274 1.274 15 H -0.268 1.268 16 H -0.276 1.276 17 C -0.058 4.058 18 C -0.115 4.115 19 C -0.094 4.094 20 C -0.102 4.102 21 Br -0.046 7.046 22 C -0.087 4.087 23 C -0.107 4.107 24 H 0.025 0.975 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.271 0.729 33 H 0.115 0.885 34 H 0.141 0.859 35 H 0.157 0.843 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.854 -7.692 -10.769 17.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 C -0.079 4.079 4 H 0.126 0.874 5 C 0.236 3.764 6 O -0.516 6.516 7 N -0.181 5.181 8 C -0.016 4.016 9 C -0.466 4.466 10 H 0.091 0.909 11 C -0.204 4.204 12 N -0.536 5.536 13 Si 0.810 3.190 14 H -0.199 1.199 15 H -0.192 1.192 16 H -0.201 1.201 17 C -0.059 4.059 18 C -0.134 4.134 19 C -0.114 4.114 20 C -0.181 4.181 21 Br 0.039 6.961 22 C -0.107 4.107 23 C -0.126 4.126 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.133 0.867 34 H 0.159 0.841 35 H 0.174 0.826 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 11.425 -7.750 -10.422 17.298 hybrid contribution -0.790 0.666 1.249 1.621 sum 10.635 -7.083 -9.174 15.730 Atomic orbital electron populations 1.21735 0.95447 1.02078 1.01224 1.21328 0.96285 0.92908 1.02539 1.20342 0.92590 0.98728 0.96219 0.87388 1.20518 0.83190 0.81874 0.90790 1.90460 1.57360 1.64087 1.39688 1.43920 1.60431 1.05024 1.08676 1.21681 1.01951 0.93402 0.84541 1.19643 1.46991 0.93282 0.86671 0.90856 1.25990 0.96145 0.96334 1.01952 1.70232 1.47569 1.08049 1.27759 0.85100 0.78698 0.77372 0.77793 1.19892 1.19238 1.20105 1.19790 0.94061 0.96894 0.95168 1.21099 0.93558 0.99901 0.98820 1.21179 0.94457 0.98705 0.97063 1.21892 0.90783 1.05569 0.99878 1.96665 1.03252 1.98225 1.97979 1.21330 0.93196 0.97638 0.98528 1.21342 0.94765 0.98598 0.97863 0.95585 0.91435 0.91126 0.88905 0.92737 0.93311 0.91788 0.92934 0.91913 0.86650 0.84125 0.82580 0.82637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.48 9.76 71.98 0.70 -3.78 16 2 C -0.09 -2.85 4.82 30.60 0.15 -2.70 16 3 C -0.06 -1.99 1.57 -12.29 -0.02 -2.01 16 4 H 0.11 3.31 6.03 -2.39 -0.01 3.30 16 5 C 0.45 21.27 5.57 87.66 0.49 21.76 16 6 O -0.63 -34.46 14.88 -3.07 -0.05 -34.51 16 7 N -0.46 -23.83 3.03 -658.90 -1.99 -25.83 16 8 C 0.13 5.65 8.70 127.77 1.11 6.76 16 9 C -0.34 -19.33 9.51 84.04 0.80 -18.53 16 10 H 0.07 4.49 7.24 -2.91 -0.02 4.47 16 11 C 0.00 -0.18 5.46 84.93 0.46 0.28 16 12 N -0.90 -46.76 9.50 21.66 0.21 -46.56 16 13 Si 0.99 43.03 29.56 68.60 2.03 45.06 16 14 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 15 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 16 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 17 C -0.06 -1.84 4.66 -19.86 -0.09 -1.93 16 18 C -0.11 -3.77 8.87 22.27 0.20 -3.57 16 19 C -0.09 -2.67 9.79 22.29 0.22 -2.45 16 20 C -0.10 -2.63 6.22 22.31 0.14 -2.49 16 21 Br -0.05 -1.02 33.70 -20.37 -0.69 -1.71 16 22 C -0.09 -2.09 9.79 22.28 0.22 -1.87 16 23 C -0.11 -2.77 9.04 22.26 0.20 -2.57 16 24 H 0.02 0.99 6.79 -2.39 -0.02 0.97 16 25 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.05 1.88 7.13 -2.39 -0.02 1.87 16 29 H 0.05 2.33 7.16 -2.39 -0.02 2.31 16 30 H 0.06 2.25 4.19 -2.39 -0.01 2.24 16 31 H 0.05 2.48 6.97 -2.38 -0.02 2.46 16 32 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 33 H 0.12 4.19 7.66 -2.91 -0.02 4.17 16 34 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 36 H 0.16 3.20 7.52 -2.91 -0.02 3.18 16 Total: -1.00 -64.96 315.27 5.17 -59.78 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 1.09 Total: 16.85 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 4.58 Total: -13.09 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: -1.79 Total: -72.38 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.05 Total: -34.51 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 35 Polarization: -1.02 SS G_CDS: -0.69 Total: -1.71 kcal Total: -64.96 5.17 -59.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858933487.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.618 kcal (2) G-P(sol) polarization free energy of solvation -64.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds