Wall clock time and date at job start Tue Mar 31 2020 14:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50705 * 119.99956 * 2 1 4 4 N 1.46901 * 109.46556 * 125.16301 * 3 2 1 5 5 C 1.46892 * 111.00322 * 302.19853 * 4 3 2 6 6 C 1.50704 * 109.47065 * 288.33696 * 5 4 3 7 7 H 1.07998 * 120.00292 * 354.90970 * 6 5 4 8 8 C 1.37875 * 120.00051 * 174.91379 * 6 5 4 9 9 N 1.31523 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00108 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46959 * 59.99995 * 10 8 6 12 12 H 1.48507 * 109.46843 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.47020 * 299.99865 * 10 8 6 14 14 C 1.46898 * 111.00037 * 66.15716 * 4 3 2 15 15 C 1.50704 * 109.47116 * 66.03848 * 14 4 3 16 16 C 1.38729 * 120.03328 * 269.72283 * 15 14 4 17 17 O 1.35898 * 120.05283 * 0.25787 * 16 15 14 18 18 C 1.38721 * 119.89765 * 180.27875 * 16 15 14 19 19 C 1.38166 * 119.96406 * 0.02562 * 18 16 15 20 20 C 1.38223 * 120.06883 * 359.97438 * 19 18 16 21 21 C 1.38214 * 120.02904 * 90.00533 * 15 14 4 22 22 Br 1.89101 * 119.98408 * 359.72091 * 21 15 14 23 23 H 1.08005 * 119.99874 * 0.02562 * 1 2 3 24 24 H 1.07996 * 119.99949 * 179.97438 * 1 2 3 25 25 H 1.07996 * 119.99997 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.47256 * 5.16549 * 3 2 1 27 27 H 1.08994 * 109.47108 * 245.16318 * 3 2 1 28 28 H 1.08996 * 109.47433 * 48.33801 * 5 4 3 29 29 H 1.09002 * 109.47264 * 168.34002 * 5 4 3 30 30 H 0.97003 * 119.99795 * 180.02562 * 9 8 6 31 31 H 1.09004 * 109.47013 * 306.04318 * 14 4 3 32 32 H 1.08999 * 109.47054 * 186.04133 * 14 4 3 33 33 H 0.96707 * 114.00250 * 89.99318 * 17 16 15 34 34 H 1.08005 * 120.01709 * 180.02562 * 18 16 15 35 35 H 1.07999 * 119.96606 * 179.97438 * 19 18 16 36 36 H 1.07996 * 119.95322 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9991 1.3303 1.1323 5 6 2.2898 1.1468 2.4055 6 6 1.4990 2.3897 2.7235 7 1 1.5851 3.2611 2.0914 8 6 0.6655 2.4143 3.8216 9 7 0.5603 1.3529 4.5912 10 14 -0.3142 3.9550 4.2162 11 1 -1.2116 4.2762 3.0774 12 1 -1.1276 3.7251 5.4372 13 1 0.6172 5.0882 4.4474 14 6 4.0533 0.3207 0.9667 15 6 4.9131 0.6818 -0.2171 16 6 4.5904 0.2073 -1.4802 17 8 3.4958 -0.5794 -1.6525 18 6 5.3872 0.5366 -2.5669 19 6 6.5003 1.3357 -2.3896 20 6 6.8205 1.8077 -1.1305 21 6 6.0273 1.4812 -0.0445 22 35 6.4685 2.1287 1.6766 23 1 -0.5400 0.9354 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3589 2.1316 0.0925 27 1 2.6190 1.4040 -0.9326 28 1 1.6131 0.2962 2.3251 29 1 3.0123 0.9626 3.2006 30 1 -0.0264 1.3701 5.3635 31 1 3.5983 -0.6558 0.8008 32 1 4.6685 0.2870 1.8659 33 1 2.6852 -0.0886 -1.8460 34 1 5.1375 0.1686 -3.5512 35 1 7.1208 1.5918 -3.2356 36 1 7.6912 2.4319 -0.9939 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862376207.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:18 Heat of formation + Delta-G solvation = 18.875566 kcal Electronic energy + Delta-G solvation = -20075.064808 eV Core-core repulsion = 16992.666781 eV Total energy + Delta-G solvation = -3082.398028 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.16390 -37.20597 -36.57212 -32.96905 -32.76669 -31.71222 -30.31416 -28.88603 -27.17184 -26.16557 -23.95647 -22.34395 -21.49635 -20.71794 -19.00406 -18.06901 -16.39559 -16.14885 -16.05809 -15.32345 -14.92335 -14.44632 -14.16625 -13.83287 -13.68056 -13.41866 -12.72863 -12.64214 -12.14240 -11.88553 -11.80178 -11.28238 -11.20844 -10.98094 -10.73938 -10.68266 -10.54543 -10.44509 -10.31771 -9.96991 -9.68538 -9.25064 -8.82865 -8.57081 -8.51985 -8.36747 -7.22970 -5.97707 -3.98224 1.09254 1.22455 1.88180 2.83061 3.34886 3.39288 3.41985 3.48587 4.27382 4.45774 4.78233 4.91640 5.01383 5.17928 5.34728 5.37734 5.49345 5.59773 5.71506 5.75153 5.85112 5.93881 6.22617 6.27757 6.29224 6.37794 6.44249 6.61553 6.65734 7.14737 7.25936 7.31563 7.44611 7.67201 7.83757 8.10181 8.19590 8.55873 9.08808 9.65074 11.12719 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.013909 B = 0.005726 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.580709 B = 4888.936289 C = 6363.890332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.193 4.193 3 C 0.088 3.912 4 N -0.514 5.514 5 C 0.193 3.807 6 C -0.499 4.499 7 H 0.061 0.939 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.078 3.922 15 C -0.060 4.060 16 C 0.114 3.886 17 O -0.495 6.495 18 C -0.136 4.136 19 C -0.109 4.109 20 C -0.105 4.105 21 C -0.060 4.060 22 Br -0.033 7.033 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.108 0.892 26 H 0.085 0.915 27 H 0.049 0.951 28 H 0.007 0.993 29 H 0.024 0.976 30 H 0.260 0.740 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.391 0.609 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.331 -1.239 -13.205 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.213 4.213 3 C -0.040 4.040 4 N -0.237 5.237 5 C 0.069 3.931 6 C -0.538 4.538 7 H 0.079 0.921 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.722 3.278 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.203 1.203 14 C -0.050 4.050 15 C -0.063 4.063 16 C 0.068 3.932 17 O -0.309 6.309 18 C -0.155 4.155 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.140 4.140 22 Br 0.053 6.947 23 H 0.114 0.886 24 H 0.104 0.896 25 H 0.125 0.875 26 H 0.104 0.896 27 H 0.067 0.933 28 H 0.025 0.975 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.251 0.749 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.013 -1.033 -12.224 17.170 hybrid contribution -1.474 0.154 -0.132 1.487 sum 10.540 -0.879 -12.356 16.264 Atomic orbital electron populations 1.23739 0.96058 1.01172 0.99921 1.23679 0.96765 1.00077 1.00732 1.21334 0.94463 0.94816 0.93400 1.62481 1.11828 1.45238 1.04104 1.19766 0.92508 0.97001 0.83846 1.21049 1.23622 0.98848 1.10288 0.92118 1.24939 0.97011 0.96145 0.96319 1.69951 1.38857 1.28537 1.16463 0.86633 0.80010 0.83615 0.77558 1.20403 1.21467 1.20252 1.21173 0.94191 0.95054 0.94607 1.20238 0.95012 0.95108 0.95922 1.18179 0.90178 0.93520 0.91327 1.84834 1.18163 1.35048 1.92889 1.21475 0.96457 0.98902 0.98677 1.20917 0.97130 0.97939 0.96787 1.21094 0.99488 1.00330 0.91602 1.21653 0.98248 1.01463 0.92680 1.96745 1.92525 1.86264 1.19129 0.88567 0.89557 0.87451 0.89633 0.93286 0.97519 0.95758 0.93015 0.93430 0.89477 0.74888 0.85214 0.85155 0.85088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 14.32 29.01 0.42 -2.46 16 2 C -0.19 -3.31 5.40 -36.02 -0.19 -3.50 16 3 C 0.09 1.60 5.04 -4.97 -0.03 1.58 16 4 N -0.51 -10.65 4.65 -238.96 -1.11 -11.76 16 5 C 0.19 4.89 4.57 -4.98 -0.02 4.87 16 6 C -0.50 -13.73 8.55 -34.44 -0.29 -14.02 16 7 H 0.06 1.67 7.64 -52.49 -0.40 1.27 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 10 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.08 1.43 4.34 -4.97 -0.02 1.41 16 15 C -0.06 -0.96 4.90 -104.45 -0.51 -1.47 16 16 C 0.11 1.62 5.54 -39.22 -0.22 1.40 16 17 O -0.50 -6.89 10.71 -19.42 -0.21 -7.10 16 18 C -0.14 -1.59 9.99 -39.43 -0.39 -1.99 16 19 C -0.11 -1.16 10.04 -39.61 -0.40 -1.56 16 20 C -0.11 -1.28 9.78 -39.53 -0.39 -1.67 16 21 C -0.06 -0.90 6.22 -39.54 -0.25 -1.15 16 22 Br -0.03 -0.51 31.78 -68.01 -2.16 -2.67 16 23 H 0.10 1.65 7.84 -52.48 -0.41 1.24 16 24 H 0.09 1.32 8.06 -52.49 -0.42 0.89 16 25 H 0.11 1.82 5.90 -52.49 -0.31 1.51 16 26 H 0.09 1.71 7.08 -51.93 -0.37 1.34 16 27 H 0.05 0.78 4.66 -51.93 -0.24 0.54 16 28 H 0.01 0.19 6.64 -51.93 -0.34 -0.16 16 29 H 0.02 0.67 7.82 -51.93 -0.41 0.26 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.05 0.89 5.82 -51.93 -0.30 0.59 16 32 H 0.09 1.67 6.37 -51.93 -0.33 1.34 16 33 H 0.39 4.75 5.57 45.56 0.25 5.01 16 34 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 311.32 15.07 4.69 4.69 Total: -1.00 -29.80 311.32 -9.16 -38.96 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -3.69 Total: 4.08 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -2.39 Total: -17.05 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.37 Total: -37.52 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.21 Total: -7.10 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.16 Total: -2.67 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.80 -9.16 -38.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862376207.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.836 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds