Wall clock time and date at job start Tue Mar 31 2020 14:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50705 * 119.99956 * 2 1 4 4 N 1.46901 * 109.46556 * 125.16301 * 3 2 1 5 5 C 1.46892 * 111.00322 * 302.19853 * 4 3 2 6 6 C 1.50704 * 109.47065 * 288.33696 * 5 4 3 7 7 H 1.07998 * 120.00292 * 354.90970 * 6 5 4 8 8 C 1.37875 * 120.00051 * 174.91379 * 6 5 4 9 9 N 1.31523 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00108 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46959 * 59.99995 * 10 8 6 12 12 H 1.48507 * 109.46843 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.47020 * 299.99865 * 10 8 6 14 14 C 1.46898 * 111.00037 * 66.15716 * 4 3 2 15 15 C 1.50704 * 109.47116 * 66.03848 * 14 4 3 16 16 C 1.38729 * 120.03328 * 269.72283 * 15 14 4 17 17 O 1.35898 * 120.05283 * 0.25787 * 16 15 14 18 18 C 1.38721 * 119.89765 * 180.27875 * 16 15 14 19 19 C 1.38166 * 119.96406 * 0.02562 * 18 16 15 20 20 C 1.38223 * 120.06883 * 359.97438 * 19 18 16 21 21 C 1.38214 * 120.02904 * 90.00533 * 15 14 4 22 22 Br 1.89101 * 119.98408 * 359.72091 * 21 15 14 23 23 H 1.08005 * 119.99874 * 0.02562 * 1 2 3 24 24 H 1.07996 * 119.99949 * 179.97438 * 1 2 3 25 25 H 1.07996 * 119.99997 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.47256 * 5.16549 * 3 2 1 27 27 H 1.08994 * 109.47108 * 245.16318 * 3 2 1 28 28 H 1.08996 * 109.47433 * 48.33801 * 5 4 3 29 29 H 1.09002 * 109.47264 * 168.34002 * 5 4 3 30 30 H 0.97003 * 119.99795 * 180.02562 * 9 8 6 31 31 H 1.09004 * 109.47013 * 306.04318 * 14 4 3 32 32 H 1.08999 * 109.47054 * 186.04133 * 14 4 3 33 33 H 0.96707 * 114.00250 * 89.99318 * 17 16 15 34 34 H 1.08005 * 120.01709 * 180.02562 * 18 16 15 35 35 H 1.07999 * 119.96606 * 179.97438 * 19 18 16 36 36 H 1.07996 * 119.95322 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9991 1.3303 1.1323 5 6 2.2898 1.1468 2.4055 6 6 1.4990 2.3897 2.7235 7 1 1.5851 3.2611 2.0914 8 6 0.6655 2.4143 3.8216 9 7 0.5603 1.3529 4.5912 10 14 -0.3142 3.9550 4.2162 11 1 -1.2116 4.2762 3.0774 12 1 -1.1276 3.7251 5.4372 13 1 0.6172 5.0882 4.4474 14 6 4.0533 0.3207 0.9667 15 6 4.9131 0.6818 -0.2171 16 6 4.5904 0.2073 -1.4802 17 8 3.4958 -0.5794 -1.6525 18 6 5.3872 0.5366 -2.5669 19 6 6.5003 1.3357 -2.3896 20 6 6.8205 1.8077 -1.1305 21 6 6.0273 1.4812 -0.0445 22 35 6.4685 2.1287 1.6766 23 1 -0.5400 0.9354 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3589 2.1316 0.0925 27 1 2.6190 1.4040 -0.9326 28 1 1.6131 0.2962 2.3251 29 1 3.0123 0.9626 3.2006 30 1 -0.0264 1.3701 5.3635 31 1 3.5983 -0.6558 0.8008 32 1 4.6685 0.2870 1.8659 33 1 2.6852 -0.0886 -1.8460 34 1 5.1375 0.1686 -3.5512 35 1 7.1208 1.5918 -3.2356 36 1 7.6912 2.4319 -0.9939 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862376207.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:18 Heat of formation + Delta-G solvation = -0.170497 kcal Electronic energy + Delta-G solvation = -20075.890708 eV Core-core repulsion = 16992.666781 eV Total energy + Delta-G solvation = -3083.223927 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.28973 -38.64236 -37.69958 -34.81220 -34.24714 -33.00719 -31.63129 -29.92871 -29.04337 -27.56083 -25.67441 -23.37693 -23.06444 -22.06976 -20.44347 -19.17034 -18.32983 -17.46584 -17.20175 -16.64583 -16.55133 -15.95112 -15.60921 -15.36374 -14.92718 -14.66100 -14.11328 -13.90718 -13.75092 -13.34632 -13.01708 -12.98032 -12.72559 -12.56992 -12.46238 -12.23570 -12.15365 -11.96411 -11.64425 -11.47460 -11.21940 -10.91890 -10.56455 -10.21119 -9.70117 -9.55614 -8.92602 -8.13704 -6.22270 0.08977 0.19471 0.76940 1.41125 1.43445 1.44416 1.51300 2.41679 2.50361 3.18876 3.23329 3.45849 3.77979 3.92653 4.05267 4.10324 4.31810 4.39397 4.44023 4.58606 4.61514 4.67821 4.88014 4.96449 5.08960 5.23803 5.26399 5.33401 5.35326 5.39824 5.68462 5.72046 5.76597 5.91410 6.12814 6.39271 6.61776 6.66913 6.92906 7.46140 8.96157 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.013909 B = 0.005726 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.580709 B = 4888.936289 C = 6363.890332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.194 4.194 3 C 0.093 3.907 4 N -0.518 5.518 5 C 0.213 3.787 6 C -0.509 4.509 7 H 0.058 0.942 8 C 0.007 3.993 9 N -0.933 5.933 10 Si 0.959 3.041 11 H -0.267 1.267 12 H -0.286 1.286 13 H -0.273 1.273 14 C 0.087 3.913 15 C -0.087 4.087 16 C 0.103 3.897 17 O -0.502 6.502 18 C -0.129 4.129 19 C -0.091 4.091 20 C -0.104 4.104 21 C -0.075 4.075 22 Br -0.054 7.054 23 H 0.091 0.909 24 H 0.104 0.896 25 H 0.110 0.890 26 H 0.066 0.934 27 H 0.076 0.924 28 H -0.016 1.016 29 H -0.009 1.009 30 H 0.261 0.739 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.397 0.603 34 H 0.159 0.841 35 H 0.173 0.827 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.933 -0.420 -15.830 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.214 4.214 3 C -0.035 4.035 4 N -0.241 5.241 5 C 0.087 3.913 6 C -0.548 4.548 7 H 0.076 0.924 8 C -0.191 4.191 9 N -0.574 5.574 10 Si 0.784 3.216 11 H -0.192 1.192 12 H -0.211 1.211 13 H -0.198 1.198 14 C -0.041 4.041 15 C -0.090 4.090 16 C 0.057 3.943 17 O -0.317 6.317 18 C -0.147 4.147 19 C -0.110 4.110 20 C -0.124 4.124 21 C -0.156 4.156 22 Br 0.032 6.968 23 H 0.109 0.891 24 H 0.122 0.878 25 H 0.128 0.872 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.001 0.999 29 H 0.009 0.991 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.257 0.743 34 H 0.177 0.823 35 H 0.191 0.809 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 12.623 -0.211 -14.878 19.512 hybrid contribution -1.586 -0.139 0.583 1.695 sum 11.037 -0.350 -14.294 18.063 Atomic orbital electron populations 1.23883 0.96037 1.01802 0.99150 1.23568 0.96860 0.99570 1.01390 1.21284 0.94064 0.94674 0.93473 1.62333 1.12279 1.46459 1.03002 1.19332 0.91186 0.95388 0.85387 1.21312 1.23812 0.99330 1.10303 0.92419 1.25764 0.98075 0.99164 0.96123 1.70083 1.39702 1.30628 1.16973 0.85593 0.78618 0.79741 0.77604 1.19193 1.21121 1.19780 1.20997 0.93505 0.94035 0.95547 1.20048 0.95730 0.97529 0.95654 1.18367 0.90762 0.93821 0.91367 1.84822 1.18544 1.35368 1.92918 1.21817 0.95828 0.98069 0.99007 1.21411 0.96513 0.95818 0.97210 1.21427 0.99515 1.00125 0.91330 1.21778 0.98964 1.02150 0.92659 1.96719 1.92551 1.86445 1.21109 0.89086 0.87806 0.87200 0.91584 0.90565 0.99875 0.99076 0.92981 0.94256 0.91216 0.74261 0.82292 0.80930 0.82953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.70 14.32 67.78 0.97 -4.73 16 2 C -0.19 -6.69 5.40 25.64 0.14 -6.55 16 3 C 0.09 3.39 5.04 85.56 0.43 3.82 16 4 N -0.52 -22.10 4.65 -909.94 -4.23 -26.33 16 5 C 0.21 11.26 4.57 85.56 0.39 11.65 16 6 C -0.51 -28.66 8.55 25.60 0.22 -28.44 16 7 H 0.06 3.22 7.64 -2.91 -0.02 3.20 16 8 C 0.01 0.37 5.46 84.65 0.46 0.84 16 9 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 10 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 13 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 14 C 0.09 3.31 4.34 85.56 0.37 3.68 16 15 C -0.09 -2.73 4.90 -19.75 -0.10 -2.82 16 16 C 0.10 2.72 5.54 22.50 0.12 2.84 16 17 O -0.50 -13.21 10.71 -92.40 -0.99 -14.20 16 18 C -0.13 -2.49 9.99 22.37 0.22 -2.27 16 19 C -0.09 -1.51 10.04 22.25 0.22 -1.29 16 20 C -0.10 -2.23 9.78 22.30 0.22 -2.01 16 21 C -0.08 -2.18 6.22 22.30 0.14 -2.05 16 22 Br -0.05 -1.72 31.78 -20.37 -0.65 -2.37 16 23 H 0.09 3.13 7.84 -2.91 -0.02 3.10 16 24 H 0.10 3.07 8.06 -2.91 -0.02 3.05 16 25 H 0.11 3.75 5.90 -2.91 -0.02 3.73 16 26 H 0.07 2.67 7.08 -2.39 -0.02 2.65 16 27 H 0.08 2.35 4.66 -2.39 -0.01 2.34 16 28 H -0.02 -0.94 6.64 -2.39 -0.02 -0.95 16 29 H -0.01 -0.52 7.82 -2.39 -0.02 -0.54 16 30 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 31 H 0.04 1.53 5.82 -2.39 -0.01 1.51 16 32 H 0.07 2.84 6.37 -2.39 -0.02 2.83 16 33 H 0.40 9.04 5.57 -74.05 -0.41 8.63 16 34 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 35 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 36 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -65.83 311.32 0.95 -64.88 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.69 Total: 14.70 kcal Atomic # 6 Polarization: -31.13 SS G_CDS: 3.82 Total: -27.32 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -3.95 Total: -82.35 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.99 Total: -14.20 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 35 Polarization: -1.72 SS G_CDS: -0.65 Total: -2.37 kcal Total: -65.83 0.95 -64.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862376207.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.707 kcal (2) G-P(sol) polarization free energy of solvation -65.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds