Wall clock time and date at job start Tue Mar 31 2020 14:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37096 * 119.99773 * 2 1 4 4 H 1.08002 * 119.99718 * 204.39360 * 3 2 1 5 5 C 1.38948 * 120.00324 * 24.39838 * 3 2 1 6 6 N 1.31414 * 119.99933 * 12.65123 * 5 3 2 7 7 Si 1.86804 * 120.00277 * 192.65801 * 5 3 2 8 8 H 1.48508 * 109.46833 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47498 * 119.99240 * 7 5 3 10 10 H 1.48498 * 109.46885 * 239.99832 * 7 5 3 11 11 C 1.34772 * 119.99861 * 179.97438 * 2 1 3 12 12 O 1.21298 * 119.99790 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00084 * 0.02562 * 11 2 1 14 14 C 1.53007 * 109.46807 * 179.97438 * 13 11 2 15 15 C 1.53002 * 109.46810 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.46930 * 180.02562 * 15 14 13 17 17 C 1.38245 * 119.99024 * 270.29658 * 16 15 14 18 18 C 1.38214 * 120.01271 * 180.25938 * 17 16 15 19 19 C 1.38327 * 119.98850 * 359.46572 * 18 17 16 20 20 Br 1.89098 * 120.01202 * 180.28230 * 19 18 17 21 21 C 1.38327 * 119.97964 * 0.25522 * 19 18 17 22 22 C 1.38219 * 119.98631 * 0.02562 * 21 19 18 23 23 H 1.09005 * 109.47103 * 265.86161 * 1 2 3 24 24 H 1.08997 * 109.47143 * 25.86504 * 1 2 3 25 25 H 1.08997 * 109.47313 * 145.86597 * 1 2 3 26 26 H 0.97000 * 119.99558 * 180.02562 * 6 5 3 27 27 H 1.08994 * 109.47057 * 60.00075 * 13 11 2 28 28 H 1.08994 * 109.46877 * 299.99097 * 13 11 2 29 29 H 1.08998 * 109.46842 * 59.99899 * 14 13 11 30 30 H 1.09000 * 109.46898 * 299.99898 * 14 13 11 31 31 H 1.09001 * 109.47134 * 59.99645 * 15 14 13 32 32 H 1.09000 * 109.47344 * 299.99670 * 15 14 13 33 33 H 1.08005 * 119.99274 * 359.97438 * 17 16 15 34 34 H 1.08004 * 120.00662 * 179.74616 * 18 17 16 35 35 H 1.08002 * 120.00631 * 180.02562 * 21 19 18 36 36 H 1.08004 * 119.98909 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1581 1.2290 -0.3863 5 6 1.5488 2.3369 0.4971 6 7 0.4347 2.2491 1.1885 7 14 2.3234 4.0074 0.1823 8 1 3.5643 3.8352 -0.6151 9 1 1.3682 4.8629 -0.5664 10 1 2.6540 4.6518 1.4787 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3853 -2.4723 0.0005 14 6 2.3797 -3.6352 0.0005 15 6 1.6147 -4.9602 0.0012 16 6 2.5940 -6.1056 0.0018 17 6 3.0478 -6.6274 -1.1952 18 6 3.9418 -7.6814 -1.1952 19 6 4.3911 -8.2070 0.0028 20 35 5.6204 -9.6438 0.0036 21 6 3.9412 -7.6808 1.2004 22 6 3.0426 -6.6306 1.1993 23 1 -0.3633 -0.0742 1.0250 24 1 -0.3633 0.9247 -0.4483 25 1 -0.3634 -0.8506 -0.5766 26 1 0.0145 3.0517 1.5351 27 1 0.7591 -2.5302 -0.8896 28 1 0.7585 -2.5298 0.8903 29 1 3.0063 -3.5774 0.8905 30 1 3.0063 -3.5774 -0.8895 31 1 0.9876 -5.0182 -0.8886 32 1 0.9883 -5.0178 0.8914 33 1 2.7001 -6.2144 -2.1307 34 1 4.2932 -8.0917 -2.1305 35 1 4.2919 -8.0906 2.1361 36 1 2.6910 -6.2199 2.1343 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900452587.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:34 Heat of formation + Delta-G solvation = -36.026554 kcal Electronic energy + Delta-G solvation = -18587.233928 eV Core-core repulsion = 15502.455166 eV Total energy + Delta-G solvation = -3084.778762 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.55184 -40.16045 -36.80106 -35.83441 -33.70119 -32.96780 -31.99913 -30.83663 -28.46053 -27.47745 -26.01370 -23.77720 -23.43726 -21.67433 -20.43854 -18.86212 -17.88465 -17.44819 -16.91724 -16.51263 -16.22151 -16.06571 -15.81589 -14.95838 -14.58770 -14.44460 -14.40862 -13.90856 -13.65409 -13.39347 -13.19851 -13.03374 -12.78827 -12.67078 -12.50537 -12.28203 -12.12415 -12.12001 -11.79671 -11.60246 -11.50051 -11.26235 -10.99860 -10.30722 -9.97538 -9.63990 -9.49719 -8.33698 -5.98369 0.11115 0.36163 0.64806 1.35566 1.40250 1.54059 2.07976 2.28660 2.63160 3.09456 3.15649 3.80973 3.81364 3.98854 4.05101 4.15721 4.38676 4.40769 4.42941 4.57621 4.66464 4.75346 4.79169 4.91730 4.99936 5.01749 5.07094 5.23847 5.25820 5.29390 5.40445 5.45158 5.48172 5.66689 5.88898 6.13023 6.51303 7.19472 7.51582 8.08246 8.69530 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.038078 B = 0.002034 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.164582 B =13760.119117 C =14113.662380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.470 5.470 3 C -0.344 4.344 4 H 0.066 0.934 5 C -0.004 4.004 6 N -0.897 5.897 7 Si 0.987 3.013 8 H -0.275 1.275 9 H -0.264 1.264 10 H -0.276 1.276 11 C 0.432 3.568 12 O -0.639 6.639 13 C -0.117 4.117 14 C -0.084 4.084 15 C -0.074 4.074 16 C -0.069 4.069 17 C -0.118 4.118 18 C -0.097 4.097 19 C -0.111 4.111 20 Br -0.055 7.055 21 C -0.097 4.097 22 C -0.120 4.120 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.273 0.727 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.586 -23.801 -2.607 23.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.189 5.189 3 C -0.472 4.472 4 H 0.084 0.916 5 C -0.206 4.206 6 N -0.536 5.536 7 Si 0.811 3.189 8 H -0.200 1.200 9 H -0.189 1.189 10 H -0.202 1.202 11 C 0.223 3.777 12 O -0.527 6.527 13 C -0.157 4.157 14 C -0.122 4.122 15 C -0.111 4.111 16 C -0.069 4.069 17 C -0.137 4.137 18 C -0.116 4.116 19 C -0.190 4.190 20 Br 0.030 6.970 21 C -0.117 4.117 22 C -0.139 4.139 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.125 0.875 28 H 0.117 0.883 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.460 -24.190 -2.515 24.364 hybrid contribution 0.286 1.429 0.115 1.462 sum 1.746 -22.760 -2.400 22.953 Atomic orbital electron populations 1.21436 0.79261 1.00875 1.00614 1.43936 1.06876 1.04793 1.63251 1.19602 1.00254 0.86479 1.40897 0.91577 1.26072 0.97118 1.02904 0.94464 1.70062 1.19736 1.30620 1.33180 0.84973 0.78333 0.77417 0.78186 1.20006 1.18851 1.20183 1.21394 0.88051 0.86821 0.81442 1.90472 1.16589 1.88297 1.57378 1.21543 0.98860 0.90313 1.04946 1.21134 0.97025 0.92338 1.01693 1.20667 0.95889 0.89520 1.05029 1.20264 0.97125 0.96134 0.93373 1.21358 0.97397 0.96046 0.98887 1.21315 0.96832 0.96275 0.97207 1.21934 1.01481 0.98731 0.96849 1.96686 1.57941 1.43029 1.99337 1.21304 0.96813 0.96322 0.97250 1.21351 0.97464 0.96154 0.98905 0.93895 0.92742 0.90929 0.91746 0.87523 0.88314 0.93671 0.93171 0.88654 0.89050 0.83574 0.83806 0.83936 0.83868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.20 8.44 127.77 1.08 6.28 16 2 N -0.47 -24.35 3.01 -658.89 -1.98 -26.33 16 3 C -0.34 -19.91 9.24 84.04 0.78 -19.14 16 4 H 0.07 4.13 7.45 -2.91 -0.02 4.11 16 5 C 0.00 -0.22 5.04 84.93 0.43 0.21 16 6 N -0.90 -47.82 10.83 21.66 0.23 -47.59 16 7 Si 0.99 42.96 29.57 68.60 2.03 44.99 16 8 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 9 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 10 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 11 C 0.43 21.04 7.63 87.66 0.67 21.71 16 12 O -0.64 -36.78 15.70 -3.09 -0.05 -36.82 16 13 C -0.12 -3.81 4.31 29.85 0.13 -3.68 16 14 C -0.08 -2.48 4.49 30.60 0.14 -2.34 16 15 C -0.07 -1.47 5.34 29.85 0.16 -1.31 16 16 C -0.07 -1.43 5.13 -19.86 -0.10 -1.53 16 17 C -0.12 -2.33 9.70 22.27 0.22 -2.11 16 18 C -0.10 -1.88 9.79 22.29 0.22 -1.66 16 19 C -0.11 -2.26 6.22 22.31 0.14 -2.12 16 20 Br -0.06 -1.01 33.70 -20.37 -0.69 -1.70 16 21 C -0.10 -1.93 9.79 22.29 0.22 -1.71 16 22 C -0.12 -2.43 9.70 22.26 0.22 -2.22 16 23 H 0.04 1.88 7.83 -2.38 -0.02 1.86 16 24 H 0.05 2.51 6.80 -2.39 -0.02 2.50 16 25 H 0.07 2.38 6.61 -2.39 -0.02 2.37 16 26 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 27 H 0.11 2.85 7.41 -2.39 -0.02 2.83 16 28 H 0.10 2.86 8.11 -2.39 -0.02 2.84 16 29 H 0.04 1.53 8.10 -2.39 -0.02 1.51 16 30 H 0.05 1.65 8.10 -2.39 -0.02 1.63 16 31 H 0.09 1.53 8.09 -2.39 -0.02 1.51 16 32 H 0.09 1.55 8.08 -2.39 -0.02 1.53 16 33 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 35 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -69.64 326.07 4.90 -64.74 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 1.07 Total: 12.33 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 4.28 Total: -9.62 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -1.75 Total: -73.92 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -0.05 Total: -36.82 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 35 Polarization: -1.01 SS G_CDS: -0.69 Total: -1.70 kcal Total: -69.64 4.90 -64.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900452587.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.717 kcal (2) G-P(sol) polarization free energy of solvation -69.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds