Wall clock time and date at job start Tue Mar 31 2020 15:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00356 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00478 * 3 2 1 6 6 H 1.48501 * 109.47006 * 150.00348 * 3 2 1 7 7 C 1.37884 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00191 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 S 1.65593 * 120.00245 * 165.00019 * 12 11 10 14 14 O 1.42095 * 106.40441 * 178.54314 * 13 12 11 15 15 O 1.42107 * 106.40414 * 311.46258 * 13 12 11 16 16 C 1.76199 * 107.21807 * 65.00204 * 13 12 11 17 17 C 1.31824 * 124.30320 * 89.72645 * 16 13 12 18 18 C 1.45387 * 114.89692 * 179.84540 * 17 16 13 19 19 C 1.41170 * 129.34429 * 180.22085 * 18 17 16 20 20 C 1.36092 * 120.45979 * 180.28287 * 19 18 17 21 21 C 1.38844 * 120.58740 * 359.95118 * 20 19 18 22 22 C 1.37462 * 120.19378 * 0.02562 * 21 20 19 23 23 C 1.39743 * 111.82636 * 0.42548 * 18 17 16 24 24 S 1.75308 * 124.29826 * 270.02635 * 16 13 12 25 25 H 0.96997 * 120.00125 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 27 27 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 28 28 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 29 29 H 1.08996 * 109.47452 * 299.99818 * 10 9 7 30 30 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 31 31 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 32 32 H 0.97000 * 119.99344 * 345.00347 * 12 11 10 33 33 H 1.08001 * 122.54621 * 359.97438 * 17 16 13 34 34 H 1.08000 * 119.76833 * 0.25936 * 19 18 17 35 35 H 1.08004 * 119.70638 * 179.97438 * 20 19 18 36 36 H 1.08004 * 119.90584 * 180.02562 * 21 20 19 37 37 H 1.07995 * 119.91603 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6366 -0.0022 12 7 6.0398 -4.0179 -0.0027 13 16 7.6215 -4.3368 -0.3752 14 8 7.7863 -5.7431 -0.2555 15 8 7.9051 -3.6198 -1.5689 16 6 8.6116 -3.6105 0.8885 17 6 8.9730 -4.2276 1.9959 18 6 9.7941 -3.4361 2.8976 19 6 10.3468 -3.7896 4.1476 20 6 11.0923 -2.8938 4.8504 21 6 11.3223 -1.6193 4.3500 22 6 10.7967 -1.2482 3.1352 23 6 10.0275 -2.1528 2.3963 24 16 9.2349 -1.9729 0.8363 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6805 0.8888 27 1 3.8745 -0.6801 -0.8912 28 1 3.6578 -3.1506 -0.8908 29 1 3.6585 -3.1503 0.8892 30 1 5.9155 -2.1225 0.8873 31 1 5.9141 -2.1231 -0.8927 32 1 5.4366 -4.7456 0.2151 33 1 8.6829 -5.2445 2.2155 34 1 10.1765 -4.7776 4.5491 35 1 11.5090 -3.1770 5.8057 36 1 11.9160 -0.9173 4.9168 37 1 10.9788 -0.2559 2.7501 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906922128.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:46 Heat of formation + Delta-G solvation = -64.842340 kcal Electronic energy + Delta-G solvation = -21917.062766 eV Core-core repulsion = 18490.258721 eV Total energy + Delta-G solvation = -3426.804045 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.059 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.57650 -38.51176 -37.49241 -37.14021 -36.39437 -35.13901 -32.99849 -32.06828 -30.66192 -28.58020 -25.14258 -24.51528 -24.11422 -22.35006 -21.96467 -20.46622 -19.56782 -18.99112 -18.53183 -17.81618 -17.38862 -16.77634 -16.43925 -16.23793 -16.09772 -15.63848 -15.47149 -14.96067 -14.80527 -14.70899 -14.24240 -14.09050 -13.88659 -13.43225 -13.35576 -13.32207 -12.90190 -12.83864 -12.74434 -12.68435 -12.62361 -12.22054 -11.83376 -11.73618 -11.65647 -11.53074 -11.30585 -10.83989 -10.74052 -10.55879 -9.87102 -8.89331 -8.27186 -6.31237 -0.92895 -0.68802 0.18235 0.24143 0.73234 0.87533 1.39644 1.40229 1.52203 1.88279 2.38664 2.50292 2.64878 3.08830 3.30076 3.60668 3.69361 3.96130 3.96585 4.21754 4.23676 4.29075 4.35801 4.40455 4.54411 4.60580 4.65607 4.89670 4.93711 5.07064 5.07187 5.17006 5.31618 5.42740 5.52321 5.60097 5.68261 5.82743 5.98664 6.30475 6.77372 7.33428 8.89572 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.012882 B = 0.003451 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.048563 B = 8111.860884 C = 9418.962538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.240 1.240 7 C -0.531 4.531 8 H 0.034 0.966 9 C -0.015 4.015 10 C -0.101 4.101 11 C 0.115 3.885 12 N -1.102 6.102 13 S 2.736 3.264 14 O -0.970 6.970 15 O -0.977 6.977 16 C -0.782 4.782 17 C 0.043 3.957 18 C -0.130 4.130 19 C -0.065 4.065 20 C -0.125 4.125 21 C -0.074 4.074 22 C -0.112 4.112 23 C -0.136 4.136 24 S 0.153 5.847 25 H 0.265 0.735 26 H 0.028 0.972 27 H 0.022 0.978 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.430 0.570 33 H 0.182 0.818 34 H 0.156 0.844 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.697 -6.105 11.273 30.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.164 1.164 7 C -0.570 4.570 8 H 0.052 0.948 9 C -0.054 4.054 10 C -0.140 4.140 11 C -0.011 4.011 12 N -0.865 5.865 13 S 2.822 3.178 14 O -0.960 6.960 15 O -0.967 6.967 16 C -0.982 4.982 17 C 0.008 3.992 18 C -0.139 4.139 19 C -0.085 4.085 20 C -0.144 4.144 21 C -0.096 4.096 22 C -0.134 4.134 23 C -0.252 4.252 24 S 0.420 5.580 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.267 0.733 33 H 0.199 0.801 34 H 0.174 0.826 35 H 0.182 0.818 36 H 0.183 0.817 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 27.814 -5.155 9.351 29.793 hybrid contribution -0.560 -0.311 1.286 1.437 sum 27.254 -5.466 10.637 29.762 Atomic orbital electron populations 1.70071 1.08384 1.28127 1.52848 1.26036 0.95599 1.03618 0.94208 0.85690 0.79752 0.78210 0.79232 1.19335 1.21175 1.16362 1.21500 0.92152 0.93142 1.50166 0.94790 1.19532 0.93929 0.94700 0.97215 1.21495 0.92204 0.98073 1.02232 1.21484 0.96296 0.80618 1.02662 1.55233 1.27423 1.15667 1.88220 1.00561 0.72132 0.72307 0.72780 1.93566 1.85906 1.29496 1.87041 1.93576 1.84564 1.74945 1.43632 1.35142 1.27913 1.12064 1.23057 1.21201 0.89199 1.00238 0.88529 1.19697 1.03011 0.93043 0.98148 1.21204 0.94802 1.01510 0.90958 1.21235 0.98440 0.93329 1.01426 1.21652 0.96768 0.97222 0.93913 1.20887 0.97823 0.99149 0.95575 1.23345 1.03685 0.98886 0.99330 1.84270 1.50932 1.06524 1.16264 0.92571 0.95330 0.95930 0.92251 0.91465 0.90379 0.90435 0.73306 0.80132 0.82589 0.81767 0.81682 0.83910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 2 C 0.00 0.11 5.47 84.66 0.46 0.57 16 3 Si 0.95 43.62 27.47 68.60 1.88 45.50 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.24 -10.04 6.54 99.48 0.65 -9.39 16 7 C -0.53 -30.13 9.66 25.60 0.25 -29.88 16 8 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 9 C -0.02 -0.69 4.04 29.85 0.12 -0.57 16 10 C -0.10 -3.61 5.29 30.59 0.16 -3.44 16 11 C 0.12 3.32 6.22 86.38 0.54 3.85 16 12 N -1.10 -27.16 6.00 -187.48 -1.12 -28.29 16 13 S 2.74 72.04 5.86 -56.49 -0.33 71.71 16 14 O -0.97 -27.71 17.70 -128.00 -2.27 -29.98 16 15 O -0.98 -31.83 17.32 -128.00 -2.22 -34.05 16 16 C -0.78 -18.69 6.42 67.04 0.43 -18.26 16 17 C 0.04 0.86 9.99 23.33 0.23 1.09 16 18 C -0.13 -2.50 6.04 -20.35 -0.12 -2.63 16 19 C -0.06 -0.83 10.05 22.49 0.23 -0.60 16 20 C -0.12 -1.17 9.95 21.92 0.22 -0.95 16 21 C -0.07 -0.76 10.03 22.23 0.22 -0.54 16 22 C -0.11 -1.72 10.07 22.48 0.23 -1.50 16 23 C -0.14 -2.82 6.48 23.03 0.15 -2.67 16 24 S 0.15 3.70 23.04 -56.49 -1.30 2.39 16 25 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 26 H 0.03 1.22 7.20 -2.39 -0.02 1.20 16 27 H 0.02 0.98 7.57 -2.38 -0.02 0.96 16 28 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.08 2.27 7.75 -2.38 -0.02 2.25 16 32 H 0.43 8.91 8.65 -96.75 -0.84 8.07 16 33 H 0.18 2.69 7.98 -2.91 -0.02 2.66 16 34 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 35 H 0.16 0.47 8.06 -2.91 -0.02 0.45 16 36 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 37 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -76.53 343.93 -1.74 -78.26 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.20 Total: 9.44 kcal Atomic # 6 Polarization: -58.64 SS G_CDS: 3.11 Total: -55.53 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -0.82 Total: -87.76 kcal Atomic # 8 Polarization: -59.54 SS G_CDS: -4.48 Total: -64.02 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.50 kcal Atomic # 16 Polarization: 75.74 SS G_CDS: -1.63 Total: 74.10 kcal Total: -76.53 -1.74 -78.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906922128.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.421 kcal (2) G-P(sol) polarization free energy of solvation -76.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds