Wall clock time and date at job start Tue Mar 31 2020 14:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48495 * 109.46968 * 29.99384 * 3 2 1 6 6 H 1.48499 * 109.47437 * 149.99853 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 O 1.42903 * 109.46878 * 179.97438 * 13 11 10 15 15 C 1.36052 * 116.99556 * 179.97438 * 14 13 11 16 16 C 1.38794 * 120.02754 * 269.72368 * 15 14 13 17 17 F 1.35101 * 120.00753 * 359.97438 * 16 15 14 18 18 C 1.38529 * 119.97778 * 179.70137 * 16 15 14 19 19 F 1.35101 * 119.99025 * 180.30194 * 18 16 15 20 20 C 1.38592 * 120.02427 * 0.57866 * 18 16 15 21 21 F 1.35099 * 119.97883 * 179.70151 * 20 18 16 22 22 C 1.38587 * 120.04544 * 359.72006 * 20 18 16 23 23 F 1.35099 * 119.98303 * 179.97438 * 22 20 18 24 24 C 1.38528 * 120.02732 * 359.97438 * 22 20 18 25 25 F 1.35101 * 120.01453 * 179.97438 * 24 22 20 26 26 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 28 28 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 29 29 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 30 30 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 31 31 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 8 2.0187 -7.2663 0.0032 15 6 2.7597 -8.4073 0.0042 16 6 3.1342 -8.9934 -1.1969 17 9 2.7624 -8.4313 -2.3678 18 6 3.8940 -10.1517 -1.1947 19 9 4.2637 -10.7190 -2.3637 20 6 4.2701 -10.7320 0.0064 21 9 5.0060 -11.8650 0.0074 22 6 3.8916 -10.1511 1.2063 23 9 4.2585 -10.7181 2.3764 24 6 3.1371 -8.9893 1.2065 25 9 2.7678 -8.4235 2.3764 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 3.1568 -3.4354 0.0021 30 1 3.3612 -5.9713 -0.8858 31 1 3.3585 -5.9707 0.8942 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916705061.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:24 Heat of formation + Delta-G solvation = -278.081440 kcal Electronic energy + Delta-G solvation = -26633.344006 eV Core-core repulsion = 21523.010127 eV Total energy + Delta-G solvation = -5110.333879 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.052 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.30436 -51.05209 -50.60094 -50.08971 -49.68651 -41.33492 -40.27344 -38.44885 -36.19034 -34.41274 -31.74151 -31.51249 -30.24178 -28.29360 -25.00867 -24.93938 -24.40026 -21.72186 -20.63973 -20.36180 -19.99572 -19.33985 -18.63985 -18.42203 -18.06136 -17.74076 -17.70984 -17.68402 -17.35703 -16.95136 -16.91195 -16.78250 -16.31999 -16.31352 -16.17331 -15.75464 -15.74516 -15.39149 -15.21007 -14.47421 -14.45914 -14.05899 -13.83464 -13.80916 -13.32124 -12.94017 -12.71101 -12.56612 -12.22153 -11.61937 -11.49203 -10.92110 -10.81061 -10.29387 -10.23321 -9.92076 -8.28805 -6.45494 -1.19154 -1.09572 0.99967 1.29355 1.45313 1.47185 1.57326 1.58319 1.72383 2.10187 2.20440 2.36217 2.48970 2.72619 2.75876 3.06767 3.23505 3.42978 3.67408 3.70900 3.87677 4.00027 4.06657 4.24048 4.80561 5.09202 5.22703 5.42695 5.58896 5.73390 5.83079 6.64088 6.79164 7.22124 7.38379 8.83360 Molecular weight = 325.05amu Principal moments of inertia in cm(-1) A = 0.023624 B = 0.002545 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.937182 B =10998.518531 C =11482.861482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.253 1.253 7 C -0.555 4.555 8 H 0.088 0.912 9 C 0.266 3.734 10 N -0.697 5.697 11 C 0.498 3.502 12 O -0.587 6.587 13 C 0.050 3.950 14 O -0.308 6.308 15 C 0.078 3.922 16 C 0.111 3.889 17 F -0.101 7.101 18 C 0.083 3.917 19 F -0.098 7.098 20 C 0.107 3.893 21 F -0.094 7.094 22 C 0.083 3.917 23 F -0.098 7.098 24 C 0.111 3.889 25 F -0.101 7.101 26 H 0.269 0.731 27 H -0.009 1.009 28 H -0.009 1.009 29 H 0.414 0.586 30 H 0.128 0.872 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.986 -22.414 0.027 26.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.177 1.177 7 C -0.593 4.593 8 H 0.106 0.894 9 C 0.144 3.856 10 N -0.349 5.349 11 C 0.284 3.716 12 O -0.467 6.467 13 C -0.026 4.026 14 O -0.224 6.224 15 C 0.030 3.970 16 C 0.089 3.911 17 F -0.079 7.079 18 C 0.061 3.939 19 F -0.076 7.076 20 C 0.085 3.915 21 F -0.072 7.072 22 C 0.061 3.939 23 F -0.076 7.076 24 C 0.089 3.911 25 F -0.079 7.079 26 H 0.077 0.923 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.250 0.750 30 H 0.146 0.854 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.824 -22.461 0.032 26.374 hybrid contribution 0.295 0.781 -0.014 0.835 sum 14.119 -21.680 0.017 25.872 Atomic orbital electron populations 1.70134 1.08320 1.28607 1.49937 1.26062 0.95739 1.03927 0.93888 0.85156 0.78546 0.76965 0.78551 1.19686 1.21227 1.17698 1.21616 0.94481 0.90300 1.52894 0.89370 1.18612 0.88626 0.83921 0.94482 1.46006 1.11706 1.04642 1.72556 1.20733 0.89354 0.84782 0.76756 1.90707 1.19244 1.85311 1.51442 1.22838 0.92951 0.79608 1.07187 1.86276 1.30965 1.11202 1.93967 1.17987 0.98245 0.91388 0.89363 1.17195 0.98780 0.93110 0.81998 1.91653 1.88913 1.83687 1.43609 1.16690 1.01838 0.93612 0.81745 1.91655 1.89226 1.83263 1.43492 1.16550 0.97984 0.86662 0.90300 1.91662 1.73255 1.45508 1.96814 1.16690 1.01941 0.93527 0.81730 1.91654 1.89307 1.83276 1.43400 1.17199 0.98871 0.93005 0.82021 1.91653 1.88980 1.83528 1.43699 0.92251 0.99135 0.99125 0.74963 0.85434 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 13.29 21.45 0.28 -54.94 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.98 41.06 29.54 68.60 2.03 43.09 16 4 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 7 C -0.56 -28.96 9.28 25.60 0.24 -28.72 16 8 H 0.09 4.07 7.60 -2.91 -0.02 4.05 16 9 C 0.27 14.06 5.43 85.63 0.46 14.52 16 10 N -0.70 -27.24 5.55 -466.78 -2.59 -29.83 16 11 C 0.50 18.86 7.91 87.66 0.69 19.55 16 12 O -0.59 -29.14 16.50 16.01 0.26 -28.87 16 13 C 0.05 1.20 6.54 71.24 0.47 1.66 16 14 O -0.31 -8.35 9.32 -75.11 -0.70 -9.05 16 15 C 0.08 1.49 5.73 22.54 0.13 1.62 16 16 C 0.11 1.89 7.31 22.47 0.16 2.05 16 17 F -0.10 -2.09 17.02 44.97 0.77 -1.32 16 18 C 0.08 1.17 7.31 22.42 0.16 1.34 16 19 F -0.10 -1.53 17.09 44.97 0.77 -0.76 16 20 C 0.11 1.39 7.31 22.44 0.16 1.56 16 21 F -0.09 -1.31 17.09 44.97 0.77 -0.54 16 22 C 0.08 1.17 7.31 22.42 0.16 1.34 16 23 F -0.10 -1.53 17.09 44.97 0.77 -0.76 16 24 C 0.11 1.88 7.31 22.47 0.16 2.05 16 25 F -0.10 -2.09 17.02 44.97 0.77 -1.32 16 26 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 27 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 28 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 29 H 0.41 12.45 8.32 -92.71 -0.77 11.68 16 30 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -71.23 314.50 6.87 -64.35 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: 0.48 Total: 2.34 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 3.27 Total: 17.62 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -2.30 Total: -84.77 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.44 Total: -37.93 kcal Atomic # 9 Polarization: -8.54 SS G_CDS: 3.84 Total: -4.71 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -71.23 6.87 -64.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916705061.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.728 kcal (2) G-P(sol) polarization free energy of solvation -71.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -284.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -278.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds