Wall clock time and date at job start Tue Mar 31 2020 15:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29411 * 1 3 3 Si 1.86796 * 119.99837 * 2 1 4 4 H 1.48501 * 109.47307 * 239.99911 * 3 2 1 5 5 H 1.48498 * 109.47104 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47221 * 119.99842 * 3 2 1 7 7 C 1.46604 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00441 * 179.97438 * 7 2 1 9 9 S 1.71207 * 119.99978 * 0.02562 * 7 2 1 10 10 C 1.76199 * 100.00020 * 185.71646 * 9 7 2 11 11 C 1.39009 * 120.15613 * 7.07518 * 10 9 7 12 12 C 1.38037 * 120.02395 * 179.72144 * 11 10 9 13 13 C 1.38487 * 120.34224 * 0.24885 * 12 11 10 14 14 C 1.38044 * 120.31370 * 359.97438 * 13 12 11 15 15 C 1.39227 * 119.97037 * 0.02562 * 14 13 12 16 16 C 1.48305 * 120.17126 * 179.97438 * 15 14 13 17 17 O 1.22287 * 120.00594 * 179.97438 * 16 15 14 18 18 N 1.31396 * 119.99914 * 359.97438 * 16 15 14 19 19 S 1.49357 * 119.99898 * 180.02562 * 18 16 15 20 20 O 1.42093 * 108.67553 * 53.76433 * 19 18 16 21 21 C 1.84121 * 109.18499 * 287.47616 * 19 18 16 22 22 C 1.55477 * 100.81387 * 224.09643 * 21 19 18 23 23 C 1.53787 * 107.94098 * 40.95225 * 22 21 19 24 24 C 1.54694 * 109.76754 * 312.48775 * 23 22 21 25 25 H 0.97000 * 120.00657 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.99046 * 359.97438 * 11 10 9 27 27 H 1.07993 * 119.82881 * 180.23210 * 12 11 10 28 28 H 1.07999 * 119.84157 * 179.97438 * 13 12 11 29 29 H 1.07999 * 120.01579 * 180.02562 * 14 13 12 30 30 H 1.09000 * 111.14802 * 341.98297 * 21 19 18 31 31 H 1.08998 * 111.15107 * 106.20760 * 21 19 18 32 32 H 1.09005 * 109.77323 * 281.33294 * 22 21 19 33 33 H 1.08993 * 109.77287 * 160.57060 * 22 21 19 34 34 H 1.09004 * 109.42010 * 192.39611 * 23 22 21 35 35 H 1.08994 * 109.42357 * 72.58105 * 23 22 21 36 36 H 1.09009 * 110.70564 * 269.69915 * 24 23 22 37 37 H 1.08997 * 110.85512 * 146.53050 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2941 0.0000 0.0000 3 14 2.2280 1.6177 0.0000 4 1 3.0818 1.6964 -1.2125 5 1 1.2630 2.7464 -0.0006 6 1 3.0818 1.6965 1.2126 7 6 2.0272 -1.2696 0.0006 8 1 3.1072 -1.2696 0.0001 9 16 1.1712 -2.7523 0.0006 10 6 2.5135 -3.8805 0.1742 11 6 3.7984 -3.4059 0.4110 12 6 4.8470 -4.2924 0.5523 13 6 4.6281 -5.6564 0.4543 14 6 3.3586 -6.1428 0.2148 15 6 2.2914 -5.2603 0.0702 16 6 0.9258 -5.7780 -0.1878 17 8 -0.0094 -5.0003 -0.3138 18 7 0.7207 -7.0726 -0.2808 19 16 -0.6545 -7.5939 -0.5412 20 8 -1.1687 -6.9602 -1.7044 21 6 -1.6766 -7.3890 0.9765 22 6 -2.3940 -8.7672 1.0333 23 6 -1.3681 -9.8510 0.6616 24 6 -0.6007 -9.4294 -0.6138 25 1 -0.4851 0.8400 -0.0004 26 1 3.9757 -2.3434 0.4886 27 1 5.8434 -3.9205 0.7400 28 1 5.4544 -6.3427 0.5658 29 1 3.1932 -7.2074 0.1397 30 1 -1.0499 -7.2355 1.8550 31 1 -2.3941 -6.5767 0.8608 32 1 -3.2204 -8.7824 0.3226 33 1 -2.7703 -8.9458 2.0405 34 1 -1.8859 -10.7926 0.4785 35 1 -0.6632 -9.9797 1.4828 36 1 -1.1075 -9.7949 -1.5070 37 1 0.4287 -9.7865 -0.5830 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925934122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:12 Heat of formation + Delta-G solvation = -27.800538 kcal Electronic energy + Delta-G solvation = -22658.353137 eV Core-core repulsion = 19233.155345 eV Total energy + Delta-G solvation = -3425.197792 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.059 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.82014 -38.98415 -37.61137 -36.88928 -34.88590 -34.32739 -31.91290 -31.70531 -30.98927 -27.58358 -26.29200 -25.04498 -23.32222 -22.33603 -21.92801 -20.02935 -19.11908 -18.50312 -17.74403 -17.39994 -17.12032 -16.79843 -16.49808 -15.79610 -15.56383 -15.40144 -15.25577 -14.95915 -14.73633 -14.56604 -14.37366 -13.60337 -13.48568 -13.36618 -13.10608 -12.99008 -12.91530 -12.88755 -12.56748 -12.44861 -12.02018 -11.75735 -11.69838 -11.49591 -11.39841 -11.25694 -10.93293 -10.50629 -10.39267 -9.84120 -9.69230 -8.58203 -8.56250 -6.03125 -1.40215 0.11685 0.64021 1.24908 1.27635 1.34160 1.39116 1.71950 1.88977 2.18437 2.23873 2.75123 2.92358 3.16390 3.40168 3.42105 3.62369 3.72024 3.91013 3.98112 4.09835 4.23834 4.35227 4.50496 4.61770 4.69832 4.71532 4.82509 4.99300 5.02091 5.04483 5.19296 5.21989 5.34007 5.48959 5.64988 5.74417 5.74922 6.08448 6.28717 6.71175 7.19759 8.45835 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.017175 B = 0.004010 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.921882 B = 6981.399704 C = 8232.502831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.036 3.964 3 Si 0.997 3.003 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.258 1.258 7 C -0.686 4.686 8 H 0.090 0.910 9 S 0.093 5.907 10 C -0.087 4.087 11 C -0.183 4.183 12 C -0.070 4.070 13 C -0.171 4.171 14 C -0.031 4.031 15 C -0.165 4.165 16 C 0.562 3.438 17 O -0.600 6.600 18 N -1.111 6.111 19 S 2.174 3.826 20 O -0.998 6.998 21 C -0.532 4.532 22 C -0.131 4.131 23 C -0.127 4.127 24 C -0.407 4.407 25 H 0.286 0.714 26 H 0.116 0.884 27 H 0.149 0.851 28 H 0.165 0.835 29 H 0.161 0.839 30 H 0.146 0.854 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.132 0.868 34 H 0.150 0.850 35 H 0.116 0.884 36 H 0.178 0.822 37 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.477 -27.417 4.935 27.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.178 4.178 3 Si 0.817 3.183 4 H -0.188 1.188 5 H -0.189 1.189 6 H -0.182 1.182 7 C -0.831 4.831 8 H 0.108 0.892 9 S 0.353 5.647 10 C -0.206 4.206 11 C -0.209 4.209 12 C -0.091 4.091 13 C -0.194 4.194 14 C -0.051 4.051 15 C -0.180 4.180 16 C 0.351 3.649 17 O -0.485 6.485 18 N -1.017 6.017 19 S 2.379 3.621 20 O -0.984 6.984 21 C -0.670 4.670 22 C -0.170 4.170 23 C -0.166 4.166 24 C -0.547 4.547 25 H 0.097 0.903 26 H 0.134 0.866 27 H 0.167 0.833 28 H 0.182 0.818 29 H 0.178 0.822 30 H 0.164 0.836 31 H 0.136 0.864 32 H 0.115 0.885 33 H 0.150 0.850 34 H 0.168 0.832 35 H 0.134 0.866 36 H 0.195 0.805 37 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -2.344 -26.598 3.950 26.992 hybrid contribution 1.024 2.424 0.175 2.637 sum -1.320 -24.175 4.125 24.560 Atomic orbital electron populations 1.69071 1.09738 1.30658 1.40518 1.27651 0.95229 1.03404 0.91483 0.85066 0.78455 0.74911 0.79866 1.18765 1.18936 1.18188 1.24990 0.97165 0.95107 1.65879 0.89215 1.83627 1.06582 0.94314 1.80131 1.23043 1.00067 0.97577 0.99888 1.21354 0.92344 1.00624 1.06560 1.21492 0.98266 0.93829 0.95533 1.21371 0.97411 0.95143 1.05509 1.21464 0.90818 1.00043 0.92744 1.19323 0.94541 0.91363 1.12804 1.17956 0.89519 0.83440 0.74013 1.91024 1.44725 1.60535 1.52184 1.69774 1.37756 1.25512 1.68650 1.17242 0.75907 0.87840 0.81106 1.93519 1.82533 1.74751 1.47631 1.30294 1.13188 1.07138 1.16343 1.22645 0.98862 0.87509 1.08015 1.22503 0.98561 1.01074 0.94416 1.29551 1.14269 1.01262 1.09651 0.90260 0.86606 0.83299 0.81769 0.82172 0.83603 0.86354 0.88452 0.85020 0.83190 0.86584 0.80466 0.79269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -55.07 13.25 23.22 0.31 -54.76 16 2 C 0.04 2.19 5.68 87.23 0.50 2.69 16 3 Si 1.00 45.98 29.64 68.60 2.03 48.02 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.69 -43.90 9.15 70.00 0.64 -43.26 16 8 H 0.09 5.51 4.98 -2.91 -0.01 5.50 16 9 S 0.09 6.00 18.45 -56.49 -1.04 4.96 16 10 C -0.09 -4.79 6.12 22.92 0.14 -4.65 16 11 C -0.18 -8.83 9.19 22.41 0.21 -8.62 16 12 C -0.07 -2.54 10.03 22.28 0.22 -2.32 16 13 C -0.17 -5.35 10.03 22.28 0.22 -5.12 16 14 C -0.03 -1.11 9.57 22.46 0.21 -0.90 16 15 C -0.16 -7.90 5.90 -19.90 -0.12 -8.01 16 16 C 0.56 27.09 7.46 87.44 0.65 27.74 16 17 O -0.60 -34.43 12.82 11.13 0.14 -34.29 16 18 N -1.11 -38.11 9.40 -180.44 -1.70 -39.81 16 19 S 2.17 55.43 4.51 -56.49 -0.25 55.18 16 20 O -1.00 -40.86 17.16 -131.59 -2.26 -43.12 16 21 C -0.53 -10.10 7.48 72.83 0.55 -9.55 16 22 C -0.13 -0.75 6.39 31.71 0.20 -0.54 16 23 C -0.13 0.06 6.35 31.44 0.20 0.26 16 24 C -0.41 -1.89 7.48 72.56 0.54 -1.35 16 25 H 0.29 16.37 8.27 -92.71 -0.77 15.61 16 26 H 0.12 5.94 5.07 -2.91 -0.01 5.93 16 27 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 28 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 29 H 0.16 4.55 7.55 -2.91 -0.02 4.53 16 30 H 0.15 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.15 -1.07 8.14 -2.38 -0.02 -1.09 16 35 H 0.12 -0.35 8.14 -2.39 -0.02 -0.37 16 36 H 0.18 -0.04 8.14 -2.38 -0.02 -0.06 16 37 H 0.19 0.01 8.14 -2.39 -0.02 -0.01 16 Total: -1.00 -108.66 334.53 2.50 -106.16 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 1.10 Total: 11.31 kcal Atomic # 6 Polarization: -57.82 SS G_CDS: 4.17 Total: -53.65 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -1.39 Total: -94.57 kcal Atomic # 8 Polarization: -75.29 SS G_CDS: -2.12 Total: -77.41 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.02 kcal Atomic # 16 Polarization: 61.43 SS G_CDS: -1.30 Total: 60.13 kcal Total: -108.66 2.50 -106.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925934122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.361 kcal (2) G-P(sol) polarization free energy of solvation -108.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds