Wall clock time and date at job start Tue Mar 31 2020 13:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50705 * 109.47037 * 2 1 4 4 C 1.37962 * 120.06735 * 264.66005 * 3 2 1 5 5 C 1.38337 * 120.16031 * 179.97438 * 4 3 2 6 6 C 1.38481 * 120.29455 * 359.97406 * 5 4 3 7 7 Br 1.89106 * 119.93349 * 180.02562 * 6 5 4 8 8 C 1.38011 * 120.13254 * 359.79164 * 6 5 4 9 9 C 1.39629 * 120.06294 * 84.64216 * 3 2 1 10 10 C 1.47725 * 120.14686 * 359.97438 * 9 3 2 11 11 O 1.21598 * 120.00155 * 303.33766 * 10 9 3 12 12 N 1.34776 * 120.00264 * 123.33511 * 10 9 3 13 13 C 1.36872 * 120.00508 * 184.11216 * 12 10 9 14 14 H 1.08000 * 119.99840 * 340.37017 * 13 12 10 15 15 C 1.39047 * 120.00134 * 160.35979 * 13 12 10 16 16 N 1.31367 * 119.99930 * 357.49028 * 15 13 12 17 17 Si 1.86800 * 119.99878 * 177.48433 * 15 13 12 18 18 H 1.48490 * 109.47305 * 60.00649 * 17 15 13 19 19 H 1.48499 * 109.47063 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47306 * 300.00328 * 17 15 13 21 21 C 1.46501 * 119.99913 * 4.11971 * 12 10 9 22 22 C 1.53000 * 109.46907 * 276.78063 * 21 12 10 23 23 H 1.09004 * 109.47190 * 300.00135 * 1 2 3 24 24 H 1.09003 * 109.47292 * 59.99588 * 1 2 3 25 25 H 1.08999 * 109.47457 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46855 * 240.00389 * 2 1 3 27 27 H 1.08997 * 109.46889 * 120.00418 * 2 1 3 28 28 H 1.07994 * 119.91970 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.85353 * 180.02562 * 5 4 3 30 30 H 1.08005 * 120.08090 * 180.25513 * 8 6 5 31 31 H 0.96994 * 119.99885 * 179.97438 * 16 15 13 32 32 H 1.09007 * 109.47250 * 36.77564 * 21 12 10 33 33 H 1.08993 * 109.47627 * 156.77786 * 21 12 10 34 34 H 1.09004 * 109.47122 * 180.02562 * 22 21 12 35 35 H 1.09001 * 109.47150 * 299.99829 * 22 21 12 36 36 H 1.08999 * 109.47357 * 59.99874 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3675 2.0355 -1.1888 5 6 2.8283 3.3399 -1.1911 6 6 2.9560 4.0377 -0.0018 7 35 3.5862 5.8206 -0.0168 8 6 2.6196 3.4363 1.1940 9 6 2.1591 2.1180 1.2032 10 6 1.8011 1.4661 2.4796 11 8 0.6858 1.0076 2.6363 12 7 2.7106 1.3794 3.4704 13 6 2.4073 0.7022 4.6205 14 1 1.3761 0.5135 4.8802 15 6 3.4269 0.2568 5.4545 16 7 4.6821 0.4426 5.1143 17 14 3.0117 -0.6054 7.0588 18 1 2.2219 -1.8299 6.7726 19 1 4.2668 -0.9780 7.7597 20 1 2.2165 0.3067 7.9197 21 6 4.0238 2.0103 3.3165 22 6 4.9488 1.0776 2.5321 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.2691 1.4974 -2.1199 29 1 3.0889 3.8164 -2.1246 30 1 2.7156 3.9827 2.1206 31 1 5.3933 0.1323 5.6963 32 1 3.9140 2.9511 2.7770 33 1 4.4517 2.2033 4.3002 34 1 5.9261 1.5467 2.4179 35 1 5.0586 0.1368 3.0715 36 1 4.5209 0.8845 1.5483 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930619027.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:46 Heat of formation + Delta-G solvation = -11.431192 kcal Electronic energy + Delta-G solvation = -20426.071627 eV Core-core repulsion = 17342.359400 eV Total energy + Delta-G solvation = -3083.712227 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.38201 -39.30543 -37.12342 -35.20770 -33.90106 -32.21760 -32.10839 -31.19771 -29.46593 -27.12877 -24.96558 -24.57602 -23.55885 -22.38677 -20.56859 -18.92560 -18.15824 -17.27741 -16.91397 -16.61287 -16.01598 -15.43034 -15.11313 -14.97417 -14.74411 -14.46009 -14.32373 -14.14741 -13.55635 -13.38758 -13.15189 -12.93781 -12.88386 -12.73406 -12.58247 -12.18698 -12.06376 -11.90418 -11.77691 -11.63046 -11.57514 -11.29134 -10.84040 -10.33898 -9.93059 -9.59657 -9.51998 -8.23573 -5.94661 0.00845 0.17314 0.59407 1.39653 1.41825 1.51253 1.98437 2.25550 2.59329 3.01646 3.16296 3.70896 3.79083 3.86590 4.08377 4.28858 4.46875 4.48318 4.51546 4.55853 4.78150 4.82859 4.88166 4.92779 4.98416 5.06889 5.15054 5.18075 5.23415 5.37932 5.47263 5.57326 5.62060 5.78346 5.87146 6.10826 6.54208 7.15643 7.45417 8.01895 8.66869 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.015248 B = 0.005059 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.903325 B = 5533.176291 C = 6729.231308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.044 4.044 4 C -0.105 4.105 5 C -0.075 4.075 6 C -0.101 4.101 7 Br -0.042 7.042 8 C -0.079 4.079 9 C -0.103 4.103 10 C 0.474 3.526 11 O -0.616 6.616 12 N -0.442 5.442 13 C -0.338 4.338 14 H 0.074 0.926 15 C -0.001 4.001 16 N -0.877 5.877 17 Si 0.990 3.010 18 H -0.279 1.279 19 H -0.268 1.268 20 H -0.272 1.272 21 C 0.118 3.882 22 C -0.127 4.127 23 H 0.047 0.953 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.036 0.964 28 H 0.172 0.828 29 H 0.167 0.833 30 H 0.123 0.877 31 H 0.273 0.727 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.242 7.554 -13.861 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.045 4.045 4 C -0.124 4.124 5 C -0.095 4.095 6 C -0.180 4.180 7 Br 0.044 6.956 8 C -0.099 4.099 9 C -0.107 4.107 10 C 0.264 3.736 11 O -0.504 6.504 12 N -0.159 5.159 13 C -0.466 4.466 14 H 0.092 0.908 15 C -0.202 4.202 16 N -0.516 5.516 17 Si 0.814 3.186 18 H -0.204 1.204 19 H -0.193 1.193 20 H -0.197 1.197 21 C -0.005 4.005 22 C -0.185 4.185 23 H 0.066 0.934 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.120 0.880 27 H 0.054 0.946 28 H 0.189 0.811 29 H 0.184 0.816 30 H 0.141 0.859 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.185 7.968 -13.645 15.951 hybrid contribution -0.278 -0.823 1.383 1.633 sum 1.907 7.145 -12.261 14.319 Atomic orbital electron populations 1.21762 0.93948 1.02017 1.02376 1.20502 0.97247 0.91767 1.02177 1.20240 0.95659 0.96657 0.91938 1.21299 0.98719 0.94668 0.97673 1.21501 0.96800 0.94093 0.97083 1.21711 1.07412 0.92994 0.95926 1.96665 1.87148 1.12547 1.99263 1.21144 0.97431 0.93783 0.97585 1.19907 1.02043 0.94792 0.93966 1.18479 0.86059 0.84883 0.84213 1.90525 1.22893 1.54867 1.82128 1.43889 1.13362 1.45323 1.13278 1.19631 0.94067 1.33853 0.99019 0.90796 1.26019 0.94649 0.97165 1.02403 1.70103 0.99037 1.44716 1.37785 0.85044 0.77801 0.78335 0.77414 1.20420 1.19267 1.19732 1.21742 0.82789 0.93797 1.02155 1.21904 0.97970 1.01736 0.96858 0.93381 0.91193 0.92135 0.88032 0.94551 0.81103 0.81592 0.85875 0.91694 0.92725 0.88938 0.92366 0.91997 0.95869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 9.71 71.98 0.70 -4.01 16 2 C -0.08 -2.65 5.40 29.85 0.16 -2.49 16 3 C -0.04 -1.46 5.17 -19.59 -0.10 -1.56 16 4 C -0.11 -2.56 9.67 22.23 0.21 -2.34 16 5 C -0.08 -1.74 9.78 22.35 0.22 -1.52 16 6 C -0.10 -2.85 6.22 22.27 0.14 -2.71 16 7 Br -0.04 -1.00 33.69 -20.37 -0.69 -1.68 16 8 C -0.08 -2.79 7.55 22.56 0.17 -2.62 16 9 C -0.10 -4.14 4.19 -20.09 -0.08 -4.23 16 10 C 0.47 23.96 5.95 86.75 0.52 24.48 16 11 O -0.62 -34.83 13.64 -4.03 -0.05 -34.89 16 12 N -0.44 -23.13 2.64 -638.94 -1.68 -24.82 16 13 C -0.34 -19.06 9.40 84.10 0.79 -18.27 16 14 H 0.07 4.46 7.30 -2.91 -0.02 4.44 16 15 C 0.00 -0.03 5.29 84.96 0.45 0.42 16 16 N -0.88 -44.22 7.86 21.68 0.17 -44.05 16 17 Si 0.99 42.03 29.55 68.60 2.03 44.05 16 18 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 21 C 0.12 5.40 5.02 86.38 0.43 5.84 16 22 C -0.13 -5.44 9.55 71.98 0.69 -4.75 16 23 H 0.05 1.99 5.69 -2.38 -0.01 1.98 16 24 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.10 2.53 8.05 -2.39 -0.02 2.52 16 27 H 0.04 1.50 7.22 -2.39 -0.02 1.49 16 28 H 0.17 2.76 8.06 -2.91 -0.02 2.73 16 29 H 0.17 2.65 8.06 -2.91 -0.02 2.62 16 30 H 0.12 4.52 6.83 -2.91 -0.02 4.50 16 31 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 32 H 0.05 2.27 4.34 -2.38 -0.01 2.26 16 33 H 0.09 4.60 5.88 -2.39 -0.01 4.59 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 35 H 0.06 3.00 6.23 -2.39 -0.01 2.99 16 36 H 0.02 0.95 7.32 -2.39 -0.02 0.93 16 Total: -1.00 -63.29 309.30 5.16 -58.13 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 1.10 Total: 17.01 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: 4.29 Total: -13.75 kcal Atomic # 7 Polarization: -67.35 SS G_CDS: -1.51 Total: -68.86 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.05 Total: -34.89 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 35 Polarization: -1.00 SS G_CDS: -0.69 Total: -1.68 kcal Total: -63.29 5.16 -58.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930619027.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.697 kcal (2) G-P(sol) polarization free energy of solvation -63.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds