Wall clock time and date at job start Tue Mar 31 2020 13:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47146 * 2 1 4 4 C 1.37978 * 120.06343 * 261.52714 * 3 2 1 5 5 C 1.38325 * 120.15632 * 179.97438 * 4 3 2 6 6 C 1.38462 * 120.28419 * 0.02562 * 5 4 3 7 7 Br 1.89101 * 119.94208 * 179.97438 * 6 5 4 8 8 C 1.38037 * 120.12185 * 359.74225 * 6 5 4 9 9 C 1.39563 * 120.06217 * 81.50002 * 3 2 1 10 10 C 1.47843 * 120.14240 * 0.02562 * 9 3 2 11 11 O 1.21555 * 119.99869 * 354.70074 * 10 9 3 12 12 N 1.34773 * 120.00246 * 174.70459 * 10 9 3 13 13 C 1.46505 * 119.99963 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46861 * 179.97438 * 13 12 10 15 15 C 1.50704 * 109.47083 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99578 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00161 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99770 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99956 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47261 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46698 * 120.00522 * 19 17 15 22 22 H 1.48497 * 109.47145 * 240.00192 * 19 17 15 23 23 H 1.09004 * 109.47626 * 299.99917 * 1 2 3 24 24 H 1.09003 * 109.47243 * 60.00299 * 1 2 3 25 25 H 1.09006 * 109.47367 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47176 * 239.99744 * 2 1 3 27 27 H 1.08998 * 109.46801 * 119.99542 * 2 1 3 28 28 H 1.08002 * 119.92173 * 359.97302 * 4 3 2 29 29 H 1.08004 * 119.85956 * 180.02562 * 5 4 3 30 30 H 1.08001 * 120.07713 * 180.25722 * 8 6 5 31 31 H 0.97001 * 120.00031 * 0.02562 * 12 10 9 32 32 H 1.08996 * 109.47216 * 300.00484 * 13 12 10 33 33 H 1.09002 * 109.46722 * 60.00788 * 13 12 10 34 34 H 1.08996 * 109.47750 * 300.00339 * 14 13 12 35 35 H 1.09006 * 109.47117 * 60.00813 * 14 13 12 36 36 H 0.97006 * 119.99987 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4286 2.0138 -1.1811 5 6 2.8895 3.3180 -1.1834 6 6 2.9570 4.0368 -0.0019 7 35 3.5893 5.8189 -0.0161 8 6 2.5590 3.4566 1.1856 9 6 2.0970 2.1395 1.1946 10 6 1.6739 1.5099 2.4636 11 8 1.1789 0.3997 2.4558 12 7 1.8369 2.1668 3.6290 13 6 1.4171 1.5431 4.8864 14 6 1.7117 2.4921 6.0497 15 6 1.2804 1.8503 7.3433 16 1 0.8406 0.8639 7.3363 17 6 1.4473 2.5223 8.5356 18 7 1.9824 3.7236 8.5439 19 14 0.9120 1.7270 10.1388 20 1 0.3435 0.3840 9.8595 21 1 2.0850 1.5901 11.0391 22 1 -0.1173 2.5747 10.7924 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 2.3788 1.4584 -2.1060 29 1 3.1981 3.7777 -2.1108 30 1 2.6080 4.0193 2.1062 31 1 2.2316 3.0529 3.6353 32 1 0.3480 1.3342 4.8492 33 1 1.9646 0.6116 5.0305 34 1 2.7809 2.7006 6.0868 35 1 1.1645 3.4239 5.9060 36 1 2.0995 4.1966 9.3827 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935339389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:52 Heat of formation + Delta-G solvation = -26.844120 kcal Electronic energy + Delta-G solvation = -18973.826543 eV Core-core repulsion = 15889.445961 eV Total energy + Delta-G solvation = -3084.380582 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.45811 -38.32513 -35.34982 -34.08277 -32.95127 -31.67791 -31.41046 -29.42284 -28.62047 -25.28413 -23.85947 -23.50644 -21.57143 -20.69206 -20.20196 -17.60404 -16.51685 -16.11287 -15.89059 -15.15223 -14.96882 -14.76870 -14.44304 -14.00515 -13.73677 -13.57251 -13.05176 -12.91260 -12.58478 -12.32458 -12.05152 -11.87120 -11.22541 -11.12889 -11.07243 -10.86453 -10.81855 -10.63812 -10.51085 -10.34445 -9.75576 -9.45874 -9.29958 -9.18462 -8.81107 -8.55561 -8.37747 -6.11330 -4.14367 0.61732 0.89554 1.38554 2.83994 3.27244 3.34779 3.39058 3.53826 3.67078 4.39524 4.45262 4.56325 4.64532 4.91009 5.12344 5.22046 5.25973 5.32976 5.49944 5.53677 5.62413 5.82190 5.87245 6.00643 6.08469 6.28456 6.29784 6.34646 6.45972 6.54182 6.69212 6.84765 7.48301 7.57889 7.86127 7.90610 8.24253 8.52303 8.91661 9.50768 11.00284 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.012963 B = 0.003410 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.542887 B = 8210.334902 C =10264.991744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.092 4.092 3 C -0.007 4.007 4 C -0.125 4.125 5 C -0.068 4.068 6 C -0.106 4.106 7 Br -0.048 7.048 8 C -0.055 4.055 9 C -0.124 4.124 10 C 0.547 3.453 11 O -0.532 6.532 12 N -0.715 5.715 13 C 0.122 3.878 14 C 0.011 3.989 15 C -0.521 4.521 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.896 3.104 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.067 0.933 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.104 0.896 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.396 0.604 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.168 2.132 -23.104 23.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.129 4.129 3 C -0.008 4.008 4 C -0.144 4.144 5 C -0.088 4.088 6 C -0.185 4.185 7 Br 0.037 6.963 8 C -0.075 4.075 9 C -0.128 4.128 10 C 0.333 3.667 11 O -0.412 6.412 12 N -0.365 5.365 13 C 0.000 4.000 14 C -0.026 4.026 15 C -0.560 4.560 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.086 0.914 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.122 0.878 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.156 0.844 31 H 0.231 0.769 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.090 2.149 -22.938 23.244 hybrid contribution -0.099 -0.043 0.949 0.955 sum 2.991 2.106 -21.988 22.290 Atomic orbital electron populations 1.21608 0.94006 1.01844 1.01682 1.20813 0.97136 0.91281 1.03679 1.20241 0.92635 0.96656 0.91315 1.21058 1.00619 0.94667 0.98009 1.21252 0.96662 0.94103 0.96800 1.21650 1.07665 0.92849 0.96326 1.96748 1.87139 1.13121 1.99260 1.21346 0.94747 0.94064 0.97376 1.20004 1.04028 0.94178 0.94571 1.18113 0.79464 0.85626 0.83448 1.90708 1.44449 1.19165 1.86848 1.46326 1.62262 1.20689 1.07201 1.21776 0.99153 0.97567 0.81468 1.19344 0.97671 0.94480 0.91149 1.21070 1.41159 1.02846 0.90937 0.92166 1.24994 0.95026 0.94863 0.99373 1.69965 1.44063 1.12342 1.26841 0.86461 0.78353 0.79547 0.83239 1.19571 1.20925 1.20920 0.91440 0.93854 0.92505 0.91938 0.87773 0.84584 0.84716 0.84356 0.76916 0.92276 0.92283 0.95893 0.95894 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 9.42 37.16 0.35 -1.26 16 2 C -0.09 -1.09 5.33 -27.88 -0.15 -1.24 16 3 C -0.01 -0.09 5.17 -104.22 -0.54 -0.62 16 4 C -0.12 -1.19 9.66 -39.64 -0.38 -1.58 16 5 C -0.07 -0.64 9.78 -39.47 -0.39 -1.03 16 6 C -0.11 -1.16 6.22 -39.57 -0.25 -1.40 16 7 Br -0.05 -0.49 33.69 -68.01 -2.29 -2.78 16 8 C -0.05 -0.67 9.26 -39.15 -0.36 -1.03 16 9 C -0.12 -1.69 5.87 -104.97 -0.62 -2.31 16 10 C 0.55 9.08 7.63 -12.33 -0.09 8.99 16 11 O -0.53 -9.90 11.58 5.32 0.06 -9.84 16 12 N -0.72 -12.32 5.51 -61.25 -0.34 -12.66 16 13 C 0.12 2.53 5.61 -4.04 -0.02 2.51 16 14 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 15 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 19 Si 0.90 21.22 29.54 -169.99 -5.02 16.19 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H 0.07 0.98 6.55 -51.93 -0.34 0.64 16 24 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.59 8.02 -51.93 -0.42 0.17 16 27 H 0.10 1.48 5.97 -51.93 -0.31 1.17 16 28 H 0.14 0.94 8.05 -52.49 -0.42 0.52 16 29 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 30 H 0.14 1.60 6.44 -52.49 -0.34 1.26 16 31 H 0.40 6.07 6.54 -40.82 -0.27 5.80 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 323.05 15.07 4.87 4.87 Total: -1.00 -29.75 323.05 -9.58 -39.33 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -4.59 Total: 1.98 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -3.00 Total: -11.89 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.40 Total: -37.85 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.06 Total: -9.84 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 35 Polarization: -0.49 SS G_CDS: -2.29 Total: -2.78 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.75 -9.58 -39.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935339389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.481 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds