Wall clock time and date at job start Tue Mar 31 2020 13:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47146 * 2 1 4 4 C 1.37978 * 120.06343 * 261.52714 * 3 2 1 5 5 C 1.38325 * 120.15632 * 179.97438 * 4 3 2 6 6 C 1.38462 * 120.28419 * 0.02562 * 5 4 3 7 7 Br 1.89101 * 119.94208 * 179.97438 * 6 5 4 8 8 C 1.38037 * 120.12185 * 359.74225 * 6 5 4 9 9 C 1.39563 * 120.06217 * 81.50002 * 3 2 1 10 10 C 1.47843 * 120.14240 * 0.02562 * 9 3 2 11 11 O 1.21555 * 119.99869 * 354.70074 * 10 9 3 12 12 N 1.34773 * 120.00246 * 174.70459 * 10 9 3 13 13 C 1.46505 * 119.99963 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46861 * 179.97438 * 13 12 10 15 15 C 1.50704 * 109.47083 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99578 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00161 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99770 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99956 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47261 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46698 * 120.00522 * 19 17 15 22 22 H 1.48497 * 109.47145 * 240.00192 * 19 17 15 23 23 H 1.09004 * 109.47626 * 299.99917 * 1 2 3 24 24 H 1.09003 * 109.47243 * 60.00299 * 1 2 3 25 25 H 1.09006 * 109.47367 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47176 * 239.99744 * 2 1 3 27 27 H 1.08998 * 109.46801 * 119.99542 * 2 1 3 28 28 H 1.08002 * 119.92173 * 359.97302 * 4 3 2 29 29 H 1.08004 * 119.85956 * 180.02562 * 5 4 3 30 30 H 1.08001 * 120.07713 * 180.25722 * 8 6 5 31 31 H 0.97001 * 120.00031 * 0.02562 * 12 10 9 32 32 H 1.08996 * 109.47216 * 300.00484 * 13 12 10 33 33 H 1.09002 * 109.46722 * 60.00788 * 13 12 10 34 34 H 1.08996 * 109.47750 * 300.00339 * 14 13 12 35 35 H 1.09006 * 109.47117 * 60.00813 * 14 13 12 36 36 H 0.97006 * 119.99987 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4286 2.0138 -1.1811 5 6 2.8895 3.3180 -1.1834 6 6 2.9570 4.0368 -0.0019 7 35 3.5893 5.8189 -0.0161 8 6 2.5590 3.4566 1.1856 9 6 2.0970 2.1395 1.1946 10 6 1.6739 1.5099 2.4636 11 8 1.1789 0.3997 2.4558 12 7 1.8369 2.1668 3.6290 13 6 1.4171 1.5431 4.8864 14 6 1.7117 2.4921 6.0497 15 6 1.2804 1.8503 7.3433 16 1 0.8406 0.8639 7.3363 17 6 1.4473 2.5223 8.5356 18 7 1.9824 3.7236 8.5439 19 14 0.9120 1.7270 10.1388 20 1 0.3435 0.3840 9.8595 21 1 2.0850 1.5901 11.0391 22 1 -0.1173 2.5747 10.7924 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 2.3788 1.4584 -2.1060 29 1 3.1981 3.7777 -2.1108 30 1 2.6080 4.0193 2.1062 31 1 2.2316 3.0529 3.6353 32 1 0.3480 1.3342 4.8492 33 1 1.9646 0.6116 5.0305 34 1 2.7809 2.7006 6.0868 35 1 1.1645 3.4239 5.9060 36 1 2.0995 4.1966 9.3827 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935339389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:51 Heat of formation + Delta-G solvation = -43.347537 kcal Electronic energy + Delta-G solvation = -18974.542184 eV Core-core repulsion = 15889.445961 eV Total energy + Delta-G solvation = -3085.096224 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.55932 -39.47594 -36.83161 -35.33338 -34.67492 -32.88271 -32.25270 -31.10131 -29.52016 -27.01048 -25.13553 -24.38944 -23.13374 -21.99211 -21.39856 -18.84730 -18.43252 -17.23050 -16.88836 -16.55393 -16.45886 -16.21685 -15.77900 -15.20101 -14.84241 -14.66005 -14.34806 -14.24212 -14.05808 -13.48506 -13.22249 -12.97824 -12.92929 -12.72876 -12.52947 -12.31167 -12.03192 -11.78902 -11.67206 -11.63748 -11.42208 -11.32595 -10.64945 -10.61164 -10.22875 -9.97864 -9.62254 -8.24980 -6.35609 -0.31449 0.03271 0.54934 1.40689 1.41694 1.54760 1.75248 2.17114 2.43365 2.62658 3.10056 3.53832 3.65572 3.73600 4.04259 4.20460 4.37019 4.43512 4.46007 4.47660 4.58064 4.71107 4.73803 4.83230 4.94806 5.03111 5.14746 5.14983 5.23724 5.41857 5.51926 5.55009 5.55688 5.67540 5.77358 6.14344 6.53730 6.77827 7.17803 7.34007 8.87170 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.012963 B = 0.003410 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.542887 B = 8210.334902 C =10264.991744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 C -0.015 4.015 4 C -0.113 4.113 5 C -0.056 4.056 6 C -0.113 4.113 7 Br -0.042 7.042 8 C -0.062 4.062 9 C -0.144 4.144 10 C 0.546 3.454 11 O -0.556 6.556 12 N -0.716 5.716 13 C 0.143 3.857 14 C 0.021 3.979 15 C -0.545 4.545 16 H 0.060 0.940 17 C 0.007 3.993 18 N -0.927 5.927 19 Si 0.965 3.035 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.277 1.277 23 H 0.034 0.966 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.173 0.827 29 H 0.166 0.834 30 H 0.136 0.864 31 H 0.405 0.595 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.007 0.993 35 H 0.007 0.993 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.375 1.946 -25.115 25.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.127 4.127 3 C -0.016 4.016 4 C -0.131 4.131 5 C -0.075 4.075 6 C -0.193 4.193 7 Br 0.044 6.956 8 C -0.082 4.082 9 C -0.148 4.148 10 C 0.334 3.666 11 O -0.437 6.437 12 N -0.367 5.367 13 C 0.020 3.980 14 C -0.016 4.016 15 C -0.584 4.584 16 H 0.078 0.922 17 C -0.191 4.191 18 N -0.567 5.567 19 Si 0.790 3.210 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.053 0.947 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.190 0.810 29 H 0.183 0.817 30 H 0.154 0.846 31 H 0.241 0.759 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.304 1.973 -24.971 25.266 hybrid contribution -0.137 0.055 1.472 1.480 sum 3.167 2.028 -23.499 23.798 Atomic orbital electron populations 1.21561 0.94306 1.01966 1.00959 1.20766 0.96855 0.91372 1.03733 1.20409 0.92891 0.96707 0.91633 1.21405 0.98816 0.94716 0.98199 1.21657 0.94763 0.93852 0.97246 1.21795 1.07647 0.93348 0.96463 1.96760 1.87014 1.12629 1.99244 1.21340 0.95101 0.93636 0.98143 1.19763 1.06448 0.95063 0.93531 1.18608 0.78593 0.85282 0.84076 1.90699 1.45382 1.20265 1.87321 1.46147 1.62888 1.21189 1.06497 1.21249 0.98438 0.96341 0.81972 1.19150 0.96179 0.94377 0.91934 1.21482 1.41345 1.03125 0.92407 0.92162 1.25873 0.94918 0.95360 1.02990 1.70070 1.44970 1.13647 1.27964 0.85391 0.78113 0.78794 0.78726 1.18855 1.20246 1.20247 0.94730 0.91847 0.92016 0.88772 0.90756 0.80966 0.81671 0.84615 0.75903 0.93156 0.93129 0.97444 0.97438 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.42 71.98 0.68 -2.33 16 2 C -0.09 -2.02 5.33 29.85 0.16 -1.86 16 3 C -0.01 -0.33 5.17 -19.61 -0.10 -0.44 16 4 C -0.11 -1.74 9.66 22.23 0.21 -1.52 16 5 C -0.06 -0.85 9.78 22.34 0.22 -0.63 16 6 C -0.11 -2.26 6.22 22.28 0.14 -2.12 16 7 Br -0.04 -0.79 33.69 -20.37 -0.69 -1.47 16 8 C -0.06 -1.47 9.26 22.55 0.21 -1.27 16 9 C -0.14 -3.90 5.87 -20.09 -0.12 -4.02 16 10 C 0.55 18.71 7.63 86.79 0.66 19.38 16 11 O -0.56 -21.49 11.58 -3.89 -0.05 -21.54 16 12 N -0.72 -25.72 5.51 -465.97 -2.57 -28.29 16 13 C 0.14 6.18 5.61 86.38 0.48 6.67 16 14 C 0.02 1.07 5.09 29.85 0.15 1.22 16 15 C -0.55 -30.50 9.11 25.60 0.23 -30.27 16 16 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 17 C 0.01 0.41 5.46 84.65 0.46 0.87 16 18 N -0.93 -54.57 13.29 21.45 0.28 -54.29 16 19 Si 0.97 43.67 29.54 68.60 2.03 45.69 16 20 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 23 H 0.03 1.01 6.55 -2.38 -0.02 1.00 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.09 1.48 8.02 -2.39 -0.02 1.46 16 27 H 0.07 2.14 5.97 -2.39 -0.01 2.12 16 28 H 0.17 1.42 8.05 -2.91 -0.02 1.40 16 29 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 30 H 0.14 3.19 6.44 -2.91 -0.02 3.17 16 31 H 0.40 12.98 6.54 -92.71 -0.61 12.37 16 32 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 36 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 Total: -1.00 -65.08 323.05 2.90 -62.18 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.49 Total: 14.03 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 3.39 Total: -16.32 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -2.28 Total: -82.58 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.05 Total: -21.54 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 35 Polarization: -0.79 SS G_CDS: -0.69 Total: -1.47 kcal Total: -65.08 2.90 -62.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935339389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.834 kcal (2) G-P(sol) polarization free energy of solvation -65.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds