Wall clock time and date at job start Tue Mar 31 2020 15:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 F 1.39898 * 109.47053 * 299.72146 * 10 9 7 12 12 F 1.39900 * 109.47203 * 59.72272 * 10 9 7 13 13 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 14 14 C 1.38631 * 120.97084 * 124.72372 * 13 10 9 15 15 C 1.39711 * 117.90738 * 179.74195 * 14 13 10 16 16 C 1.48346 * 120.16936 * 180.25743 * 15 14 13 17 17 C 1.39363 * 120.11612 * 0.02562 * 16 15 14 18 18 C 1.38020 * 119.86499 * 179.76827 * 17 16 15 19 19 C 1.38317 * 120.12862 * 0.51201 * 18 17 16 20 20 C 1.38327 * 120.24694 * 359.73938 * 19 18 17 21 21 C 1.38014 * 120.12423 * 0.02562 * 20 19 18 22 22 N 1.32726 * 119.66252 * 0.55223 * 15 14 13 23 23 N 1.28348 * 122.05401 * 359.70292 * 22 15 14 24 24 C 1.32081 * 122.27878 * 0.02562 * 23 22 15 25 25 Cl 1.73603 * 119.98025 * 179.97438 * 24 23 22 26 26 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 27 27 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 28 28 H 1.07999 * 121.04594 * 359.97438 * 14 13 10 29 29 H 1.07995 * 120.06745 * 359.97438 * 17 16 15 30 30 H 1.08006 * 119.93253 * 180.27500 * 18 17 16 31 31 H 1.07998 * 119.87502 * 179.76653 * 19 18 17 32 32 H 1.08001 * 119.93404 * 180.02562 * 20 19 18 33 33 H 1.08003 * 120.06044 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 9 3.7784 -3.2079 1.1346 12 9 3.7697 -3.2009 -1.1500 13 6 5.5937 -2.1954 -0.0115 14 6 6.4225 -2.7337 0.9607 15 6 7.7869 -2.4412 0.8919 16 6 8.7201 -2.9955 1.9031 17 6 8.2391 -3.8111 2.9258 18 6 9.1127 -4.3279 3.8610 19 6 10.4614 -4.0293 3.7909 20 6 10.9434 -3.2161 2.7810 21 6 10.0798 -2.6977 1.8375 22 7 8.2431 -1.6600 -0.0793 23 7 7.4684 -1.1611 -0.9728 24 6 6.1676 -1.3902 -0.9861 25 17 5.1750 -0.6840 -2.2230 26 1 -0.4851 0.8401 0.0004 27 1 3.8646 -0.3620 0.0004 28 1 6.0265 -3.3625 1.7444 29 1 7.1855 -4.0408 2.9844 30 1 8.7418 -4.9637 4.6514 31 1 11.1407 -4.4329 4.5271 32 1 11.9976 -2.9866 2.7308 33 1 10.4574 -2.0632 1.0492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534715.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:58 Heat of formation + Delta-G solvation = 8.748585 kcal Electronic energy + Delta-G solvation = -24524.271085 eV Core-core repulsion = 20441.233745 eV Total energy + Delta-G solvation = -4083.037339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.049 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.29068 -46.38495 -41.39924 -39.25964 -36.91158 -35.11867 -34.03990 -33.36815 -31.39689 -31.11301 -30.09571 -26.84735 -25.16513 -24.11697 -22.52609 -22.45795 -21.34916 -18.82957 -18.28652 -17.59861 -17.16919 -16.86946 -16.44843 -16.37481 -15.48233 -15.42722 -14.85301 -14.40500 -14.29306 -14.06431 -13.55336 -13.34808 -13.14216 -12.99318 -12.86193 -12.72818 -12.28672 -12.12527 -11.97997 -11.60677 -11.44171 -11.32047 -11.17022 -11.11941 -10.69567 -10.46961 -10.17635 -9.94003 -9.85486 -9.69204 -9.27837 -8.76396 -8.00445 -6.06797 -3.55581 -0.05163 0.29705 1.08142 1.26878 1.56163 3.01001 3.17959 3.20745 3.26301 3.34954 3.55044 3.60589 3.96113 4.22772 4.31485 4.37620 4.46193 4.64223 4.66701 4.75755 4.98298 5.02636 5.09469 5.17869 5.27060 5.35620 5.46565 5.65960 5.73128 5.88932 6.11046 6.16892 6.18883 6.59331 7.43261 8.03344 8.21427 8.72341 9.44690 9.51567 11.08590 Molecular weight = 325.05amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.004047 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.803214 B = 6916.734843 C = 7378.642865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.033 3.967 3 Si 0.869 3.131 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.274 4.274 8 H 0.104 0.896 9 N -0.733 5.733 10 C 0.567 3.433 11 F -0.198 7.198 12 F -0.192 7.192 13 C -0.124 4.124 14 C -0.064 4.064 15 C 0.110 3.890 16 C -0.050 4.050 17 C -0.094 4.094 18 C -0.121 4.121 19 C -0.104 4.104 20 C -0.125 4.125 21 C -0.075 4.075 22 N -0.209 5.209 23 N -0.221 5.221 24 C 0.134 3.866 25 Cl 0.031 6.969 26 H 0.267 0.733 27 H 0.381 0.619 28 H 0.172 0.828 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.091 -7.152 5.401 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.166 4.166 3 Si 0.697 3.303 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.402 4.402 8 H 0.121 0.879 9 N -0.384 5.384 10 C 0.439 3.561 11 F -0.180 7.180 12 F -0.173 7.173 13 C -0.138 4.138 14 C -0.093 4.093 15 C -0.032 4.032 16 C -0.052 4.052 17 C -0.113 4.113 18 C -0.139 4.139 19 C -0.122 4.122 20 C -0.143 4.143 21 C -0.094 4.094 22 N -0.053 5.053 23 N -0.065 5.065 24 C -0.036 4.036 25 Cl 0.060 6.940 26 H 0.077 0.923 27 H 0.218 0.782 28 H 0.189 0.811 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 20.931 -6.385 4.526 22.346 hybrid contribution -0.932 0.501 0.547 1.191 sum 19.999 -5.884 5.073 21.455 Atomic orbital electron populations 1.69674 1.05032 1.26604 1.53991 1.24587 0.95145 0.97060 0.99778 0.86797 0.79543 0.85139 0.78779 1.19818 1.20579 1.20167 1.18957 0.78669 0.95920 1.46645 0.87876 1.43769 1.05911 1.00614 1.88083 1.17080 0.83889 0.80708 0.74448 1.93048 1.93453 1.79269 1.52214 1.93121 1.93217 1.79325 1.51681 1.21392 0.97433 0.98770 0.96212 1.22398 0.92429 0.96910 0.97537 1.21387 0.91821 0.95066 0.94953 1.18198 0.92613 0.99849 0.94491 1.21309 1.00478 0.95941 0.93566 1.21097 0.93399 1.00356 0.99086 1.21348 0.95694 0.97220 0.97952 1.21171 1.00015 0.98112 0.95023 1.21354 0.91815 0.97786 0.98468 1.73199 1.27637 1.05527 0.98922 1.73046 1.00840 1.16162 1.16419 1.23457 0.92516 0.95001 0.92662 1.98507 1.64131 1.81364 1.50001 0.92255 0.78223 0.81073 0.85099 0.85236 0.85656 0.85391 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.24 13.97 55.49 0.78 -26.46 16 2 C 0.03 0.94 5.50 -17.43 -0.10 0.84 16 3 Si 0.87 21.04 27.74 -169.99 -4.71 16.33 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 7 C -0.27 -7.52 10.16 -15.06 -0.15 -7.68 16 8 H 0.10 3.07 8.06 -52.49 -0.42 2.65 16 9 N -0.73 -17.26 4.24 -59.64 -0.25 -17.51 16 10 C 0.57 11.61 2.00 -5.19 -0.01 11.60 16 11 F -0.20 -3.97 15.89 2.25 0.04 -3.93 16 12 F -0.19 -4.07 16.61 2.25 0.04 -4.03 16 13 C -0.12 -2.16 5.20 -104.25 -0.54 -2.70 16 14 C -0.06 -0.90 8.92 -38.89 -0.35 -1.25 16 15 C 0.11 1.51 6.81 -82.77 -0.56 0.95 16 16 C -0.05 -0.55 5.88 -104.90 -0.62 -1.17 16 17 C -0.09 -0.88 9.43 -39.24 -0.37 -1.25 16 18 C -0.12 -0.93 10.03 -39.63 -0.40 -1.33 16 19 C -0.10 -0.74 10.04 -39.52 -0.40 -1.14 16 20 C -0.13 -0.99 10.03 -39.63 -0.40 -1.38 16 21 C -0.08 -0.75 9.58 -39.25 -0.38 -1.13 16 22 N -0.21 -3.22 10.63 33.36 0.35 -2.86 16 23 N -0.22 -3.73 11.49 32.91 0.38 -3.36 16 24 C 0.13 2.37 7.10 -17.22 -0.12 2.25 16 25 Cl 0.03 0.57 26.18 -51.86 -1.36 -0.78 16 26 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.38 8.73 4.39 -40.82 -0.18 8.55 16 28 H 0.17 1.98 5.58 -52.49 -0.29 1.69 16 29 H 0.13 1.05 6.25 -52.49 -0.33 0.72 16 30 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 31 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 33 H 0.14 1.36 7.56 -52.48 -0.40 0.96 16 LS Contribution 312.47 15.07 4.71 4.71 Total: -1.00 -30.71 312.47 -6.48 -37.19 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -2.06 Total: 4.11 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -4.39 Total: -3.40 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 1.25 Total: -50.19 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 0.07 Total: -7.96 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.71 Total: 16.33 kcal Atomic # 17 Polarization: 0.57 SS G_CDS: -1.36 Total: -0.78 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.71 -6.48 -37.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534715.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.938 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds