Wall clock time and date at job start Tue Mar 31 2020 15:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 F 1.39898 * 109.47053 * 299.72146 * 10 9 7 12 12 F 1.39900 * 109.47203 * 59.72272 * 10 9 7 13 13 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 14 14 C 1.38631 * 120.97084 * 124.72372 * 13 10 9 15 15 C 1.39711 * 117.90738 * 179.74195 * 14 13 10 16 16 C 1.48346 * 120.16936 * 180.25743 * 15 14 13 17 17 C 1.39363 * 120.11612 * 0.02562 * 16 15 14 18 18 C 1.38020 * 119.86499 * 179.76827 * 17 16 15 19 19 C 1.38317 * 120.12862 * 0.51201 * 18 17 16 20 20 C 1.38327 * 120.24694 * 359.73938 * 19 18 17 21 21 C 1.38014 * 120.12423 * 0.02562 * 20 19 18 22 22 N 1.32726 * 119.66252 * 0.55223 * 15 14 13 23 23 N 1.28348 * 122.05401 * 359.70292 * 22 15 14 24 24 C 1.32081 * 122.27878 * 0.02562 * 23 22 15 25 25 Cl 1.73603 * 119.98025 * 179.97438 * 24 23 22 26 26 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 27 27 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 28 28 H 1.07999 * 121.04594 * 359.97438 * 14 13 10 29 29 H 1.07995 * 120.06745 * 359.97438 * 17 16 15 30 30 H 1.08006 * 119.93253 * 180.27500 * 18 17 16 31 31 H 1.07998 * 119.87502 * 179.76653 * 19 18 17 32 32 H 1.08001 * 119.93404 * 180.02562 * 20 19 18 33 33 H 1.08003 * 120.06044 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 9 3.7784 -3.2079 1.1346 12 9 3.7697 -3.2009 -1.1500 13 6 5.5937 -2.1954 -0.0115 14 6 6.4225 -2.7337 0.9607 15 6 7.7869 -2.4412 0.8919 16 6 8.7201 -2.9955 1.9031 17 6 8.2391 -3.8111 2.9258 18 6 9.1127 -4.3279 3.8610 19 6 10.4614 -4.0293 3.7909 20 6 10.9434 -3.2161 2.7810 21 6 10.0798 -2.6977 1.8375 22 7 8.2431 -1.6600 -0.0793 23 7 7.4684 -1.1611 -0.9728 24 6 6.1676 -1.3902 -0.9861 25 17 5.1750 -0.6840 -2.2230 26 1 -0.4851 0.8401 0.0004 27 1 3.8646 -0.3620 0.0004 28 1 6.0265 -3.3625 1.7444 29 1 7.1855 -4.0408 2.9844 30 1 8.7418 -4.9637 4.6514 31 1 11.1407 -4.4329 4.5271 32 1 11.9976 -2.9866 2.7308 33 1 10.4574 -2.0632 1.0492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534715.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:58 Heat of formation + Delta-G solvation = -9.665741 kcal Electronic energy + Delta-G solvation = -24525.069590 eV Core-core repulsion = 20441.233745 eV Total energy + Delta-G solvation = -4083.835845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.049 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.96112 -48.06375 -42.60154 -39.97490 -38.26384 -36.86478 -35.27201 -34.73163 -33.20305 -31.92544 -30.98570 -28.40085 -26.28900 -25.65280 -23.96093 -23.19196 -22.53849 -20.54206 -19.56922 -19.00796 -18.61393 -18.23184 -18.02050 -17.51055 -16.75604 -16.47822 -16.27002 -15.56952 -15.34895 -15.01424 -14.92304 -14.79238 -14.72918 -14.41565 -14.26264 -14.14111 -13.98347 -13.34745 -13.16222 -12.99855 -12.98473 -12.77521 -12.36489 -12.19775 -12.04604 -11.98534 -11.90189 -11.65301 -11.34870 -11.17460 -10.07595 -9.91060 -9.58889 -8.21943 -5.73051 -1.17101 -0.91828 0.23102 0.41994 0.45940 1.26054 1.30602 1.34321 1.82419 1.89296 2.29683 2.42951 2.69413 2.81917 2.88905 3.05483 3.11187 3.22127 3.45605 3.70992 3.90036 4.04129 4.13840 4.24531 4.35040 4.37323 4.54808 4.66563 4.93616 5.12238 5.37353 5.47017 5.49429 5.56448 5.93163 5.98604 6.63817 6.99264 7.31591 7.48376 8.96922 Molecular weight = 325.05amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.004047 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.803214 B = 6916.734843 C = 7378.642865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.020 4.020 3 Si 0.926 3.074 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.267 4.267 8 H 0.068 0.932 9 N -0.739 5.739 10 C 0.567 3.433 11 F -0.195 7.195 12 F -0.199 7.199 13 C -0.137 4.137 14 C -0.048 4.048 15 C 0.126 3.874 16 C -0.078 4.078 17 C -0.098 4.098 18 C -0.124 4.124 19 C -0.094 4.094 20 C -0.128 4.128 21 C -0.086 4.086 22 N -0.218 5.218 23 N -0.229 5.229 24 C 0.124 3.876 25 Cl 0.016 6.984 26 H 0.268 0.732 27 H 0.385 0.615 28 H 0.199 0.801 29 H 0.142 0.858 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.241 -7.760 7.465 25.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.215 4.215 3 Si 0.751 3.249 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.396 4.396 8 H 0.086 0.914 9 N -0.390 5.390 10 C 0.439 3.561 11 F -0.177 7.177 12 F -0.180 7.180 13 C -0.150 4.150 14 C -0.077 4.077 15 C -0.017 4.017 16 C -0.080 4.080 17 C -0.117 4.117 18 C -0.141 4.141 19 C -0.112 4.112 20 C -0.145 4.145 21 C -0.105 4.105 22 N -0.060 5.060 23 N -0.073 5.073 24 C -0.047 4.047 25 Cl 0.045 6.955 26 H 0.077 0.923 27 H 0.222 0.778 28 H 0.216 0.784 29 H 0.159 0.841 30 H 0.173 0.827 31 H 0.174 0.826 32 H 0.169 0.831 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 24.136 -7.014 6.583 25.983 hybrid contribution -1.695 0.466 0.041 1.758 sum 22.442 -6.548 6.624 24.298 Atomic orbital electron populations 1.69819 1.06828 1.27541 1.56109 1.25285 0.95867 1.00503 0.99882 0.85873 0.79043 0.80669 0.79321 1.19020 1.20368 1.18137 1.18752 0.80436 0.94603 1.45847 0.91385 1.43632 1.04565 1.02095 1.88712 1.17256 0.85454 0.79556 0.73800 1.93032 1.93674 1.79000 1.51986 1.93089 1.93495 1.79337 1.52107 1.21119 0.95586 1.00497 0.97792 1.22728 0.92285 0.95873 0.96846 1.21789 0.92041 0.93429 0.94432 1.18249 0.92708 1.01950 0.95116 1.21533 1.01501 0.95400 0.93254 1.21467 0.93512 1.00091 0.99076 1.21790 0.96060 0.95649 0.97670 1.21477 1.00943 0.97665 0.94444 1.21453 0.91781 0.98124 0.99111 1.73172 1.27395 1.06161 0.99320 1.73048 1.00426 1.16644 1.17152 1.23397 0.92777 0.95729 0.92768 1.98493 1.64587 1.81745 1.50709 0.92284 0.77771 0.78389 0.84051 0.82679 0.82615 0.83087 0.85082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.85 13.97 21.65 0.30 -58.55 16 2 C -0.02 -1.16 5.50 84.86 0.47 -0.69 16 3 Si 0.93 43.38 27.74 68.60 1.90 45.28 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.26 -11.09 6.52 99.48 0.65 -10.44 16 7 C -0.27 -15.01 10.16 84.03 0.85 -14.15 16 8 H 0.07 4.23 8.06 -2.91 -0.02 4.20 16 9 N -0.74 -34.81 4.24 -342.60 -1.45 -36.26 16 10 C 0.57 23.09 2.00 85.63 0.17 23.26 16 11 F -0.20 -7.70 15.89 44.97 0.71 -6.98 16 12 F -0.20 -8.53 16.61 44.97 0.75 -7.78 16 13 C -0.14 -4.64 5.20 -19.63 -0.10 -4.74 16 14 C -0.05 -1.28 8.92 22.72 0.20 -1.08 16 15 C 0.13 3.23 6.81 42.06 0.29 3.51 16 16 C -0.08 -1.57 5.88 -20.05 -0.12 -1.68 16 17 C -0.10 -1.51 9.43 22.49 0.21 -1.30 16 18 C -0.12 -1.38 10.03 22.24 0.22 -1.16 16 19 C -0.09 -0.92 10.04 22.31 0.22 -0.70 16 20 C -0.13 -1.56 10.03 22.24 0.22 -1.33 16 21 C -0.09 -1.52 9.58 22.49 0.22 -1.30 16 22 N -0.22 -6.46 10.63 -48.38 -0.51 -6.97 16 23 N -0.23 -7.61 11.49 -49.80 -0.57 -8.19 16 24 C 0.12 4.33 7.10 84.80 0.60 4.93 16 25 Cl 0.02 0.59 26.18 -2.72 -0.07 0.52 16 26 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 27 H 0.38 17.40 4.39 -92.71 -0.41 16.99 16 28 H 0.20 4.05 5.58 -2.91 -0.02 4.04 16 29 H 0.14 1.78 6.25 -2.91 -0.02 1.76 16 30 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 31 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 32 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 33 H 0.13 2.42 7.56 -2.91 -0.02 2.39 16 Total: -1.00 -67.83 312.47 5.25 -62.58 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.73 Total: 12.77 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 3.46 Total: 3.57 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -2.24 Total: -109.96 kcal Atomic # 9 Polarization: -16.23 SS G_CDS: 1.46 Total: -14.77 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.90 Total: 45.28 kcal Atomic # 17 Polarization: 0.59 SS G_CDS: -0.07 Total: 0.52 kcal Total: -67.83 5.25 -62.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534715.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.915 kcal (2) G-P(sol) polarization free energy of solvation -67.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds