Wall clock time and date at job start Tue Mar 31 2020 14:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.46957 * 2 1 4 4 C 1.46906 * 110.99863 * 68.52397 * 3 2 1 5 5 C 1.50695 * 109.47231 * 66.04516 * 4 3 2 6 6 H 1.08006 * 119.99857 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00172 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00418 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99870 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46764 * 90.00516 * 9 7 5 11 11 H 1.48499 * 109.47375 * 210.00319 * 9 7 5 12 12 H 1.48500 * 109.47105 * 330.00806 * 9 7 5 13 13 C 1.38721 * 111.00307 * 304.56976 * 3 2 1 14 14 N 1.31895 * 119.76089 * 104.83148 * 13 3 2 15 15 C 1.33907 * 119.68398 * 179.97438 * 14 13 3 16 16 C 1.40525 * 120.96260 * 180.02562 * 15 14 13 17 17 C 1.36112 * 119.75275 * 180.02562 * 16 15 14 18 18 C 1.39438 * 120.91504 * 359.93944 * 17 16 15 19 19 Cl 1.73602 * 119.54432 * 180.02562 * 18 17 16 20 20 C 1.36243 * 120.91150 * 0.04146 * 18 17 16 21 21 C 1.40474 * 119.73791 * 359.97438 * 20 18 17 22 22 N 1.33949 * 120.93517 * 179.97438 * 21 20 18 23 23 C 1.31217 * 119.84287 * 180.02562 * 22 21 20 24 24 Cl 1.73597 * 119.71524 * 179.97438 * 23 22 21 25 25 H 1.08998 * 109.46985 * 304.80649 * 1 2 3 26 26 H 1.09005 * 109.47338 * 64.80592 * 1 2 3 27 27 H 1.08999 * 109.46644 * 184.80713 * 1 2 3 28 28 H 1.08994 * 109.46839 * 240.00434 * 2 1 3 29 29 H 1.08995 * 109.47034 * 120.00044 * 2 1 3 30 30 H 1.09002 * 109.47159 * 186.04509 * 4 3 2 31 31 H 1.09002 * 109.46877 * 306.04640 * 4 3 2 32 32 H 0.96997 * 120.00284 * 179.97438 * 8 7 5 33 33 H 1.07998 * 120.12369 * 359.97266 * 16 15 14 34 34 H 1.08002 * 119.54311 * 179.97438 * 17 16 15 35 35 H 1.08000 * 120.13004 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7217 2.0487 1.2763 5 6 2.5081 1.3904 2.3804 6 1 3.1634 0.5616 2.1565 7 6 2.3903 1.8455 3.6766 8 7 3.0770 1.2714 4.6401 9 14 1.2564 3.2786 4.0639 10 1 -0.0993 2.7643 4.3845 11 1 1.7888 4.0305 5.2285 12 1 1.1781 4.1801 2.8864 13 6 1.4926 2.0987 -1.0664 14 7 0.5319 2.9774 -0.8551 15 6 0.0246 3.6659 -1.8856 16 6 -0.9990 4.6089 -1.6911 17 6 -1.4970 5.2945 -2.7563 18 6 -1.0048 5.0760 -4.0425 19 17 -1.6656 5.9708 -5.3753 20 6 -0.0127 4.1698 -4.2677 21 6 0.5250 3.4436 -3.1921 22 7 1.5005 2.5465 -3.3862 23 6 1.9869 1.8797 -2.3661 24 17 3.2507 0.7173 -2.6216 25 1 -0.3633 0.5866 0.8438 26 1 -0.3634 0.4375 -0.9299 27 1 -0.3632 -1.0241 0.0861 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.9975 3.1013 1.2115 31 1 0.6560 1.9647 1.4893 32 1 2.9944 1.5918 5.5519 33 1 -1.3895 4.7883 -0.7004 34 1 -2.2839 6.0182 -2.6030 35 1 0.3593 4.0109 -5.2690 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591370.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:05 Heat of formation + Delta-G solvation = 55.602156 kcal Electronic energy + Delta-G solvation = -22679.682027 eV Core-core repulsion = 19150.473091 eV Total energy + Delta-G solvation = -3529.208936 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 325.044 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.81971 -40.07888 -38.43412 -37.91343 -37.04378 -35.71533 -34.70349 -31.92906 -31.84916 -31.17743 -29.05479 -26.37357 -25.29616 -24.61712 -23.49708 -22.15809 -19.79925 -19.74695 -18.99980 -18.07362 -17.33373 -16.90860 -16.71867 -16.25280 -16.05806 -15.89533 -15.27850 -15.00256 -14.61462 -14.28764 -14.10713 -13.64653 -13.54143 -13.50064 -13.35154 -13.03472 -12.94564 -12.79629 -12.57183 -12.50078 -12.40747 -12.11568 -12.01174 -11.87451 -11.64252 -11.49936 -10.80620 -10.55837 -10.23724 -9.84936 -9.18363 -8.29036 -6.32651 -1.13300 -0.83125 0.44400 0.59580 0.89577 1.33938 1.34797 1.36816 1.47870 2.32605 2.34422 2.63552 2.88937 2.93544 3.05191 3.21386 3.61925 3.74032 3.88660 4.06718 4.14055 4.18398 4.42689 4.55378 4.61331 4.70738 4.79030 4.86208 4.90322 4.94312 5.06982 5.24626 5.27263 5.44171 5.65015 5.77342 6.04370 6.42140 6.44246 6.73247 7.30330 8.86369 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.014041 B = 0.004276 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.702821 B = 6547.011419 C = 8011.837495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.059 3.941 3 N -0.468 5.468 4 C 0.188 3.812 5 C -0.519 4.519 6 H 0.052 0.948 7 C 0.021 3.979 8 N -0.939 5.939 9 Si 0.933 3.067 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.256 1.256 13 C 0.311 3.689 14 N -0.472 5.472 15 C 0.091 3.909 16 C -0.082 4.082 17 C -0.067 4.067 18 C -0.018 4.018 19 Cl -0.039 7.039 20 C -0.065 4.065 21 C 0.060 3.940 22 N -0.412 5.412 23 C 0.154 3.846 24 Cl 0.014 6.986 25 H 0.050 0.950 26 H 0.040 0.960 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.020 0.980 31 H 0.015 0.985 32 H 0.268 0.732 33 H 0.161 0.839 34 H 0.181 0.819 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.417 6.703 -19.308 23.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.066 4.066 3 N -0.186 5.186 4 C 0.062 3.938 5 C -0.557 4.557 6 H 0.070 0.930 7 C -0.177 4.177 8 N -0.579 5.579 9 Si 0.758 3.242 10 H -0.188 1.188 11 H -0.208 1.208 12 H -0.180 1.180 13 C 0.062 3.938 14 N -0.192 5.192 15 C -0.035 4.035 16 C -0.101 4.101 17 C -0.087 4.087 18 C -0.047 4.047 19 Cl -0.010 7.010 20 C -0.085 4.085 21 C -0.064 4.064 22 N -0.128 5.128 23 C -0.032 4.032 24 Cl 0.042 6.958 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.178 0.822 34 H 0.199 0.801 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.916 6.758 -19.348 23.220 hybrid contribution -0.442 0.325 0.702 0.891 sum -11.358 7.083 -18.646 22.953 Atomic orbital electron populations 1.22287 0.96333 1.03564 1.00809 1.22297 0.94054 0.85785 1.04425 1.59465 1.52484 1.04067 1.02612 1.19831 0.95451 0.93798 0.84709 1.21151 1.25801 1.17381 0.91348 0.93008 1.25608 0.97044 0.99129 0.95955 1.70007 1.43238 1.43396 1.01294 0.85912 0.79680 0.80268 0.78386 1.18824 1.20766 1.18003 1.20913 0.88429 0.93271 0.91210 1.69118 1.07854 1.08930 1.33330 1.20036 0.97622 0.96883 0.88943 1.20961 0.94252 0.93398 1.01513 1.21202 0.99631 0.98931 0.88906 1.20632 0.97137 0.96500 0.90453 1.98406 1.84399 1.73245 1.44973 1.20663 0.95020 0.93809 0.98987 1.19363 0.95830 0.97281 0.93944 1.67941 1.08525 1.04526 1.31823 1.22658 0.95065 0.96240 0.89279 1.98412 1.46865 1.53694 1.96802 0.93066 0.94127 0.89306 0.88996 0.89166 0.96214 0.96684 0.92306 0.82167 0.80136 0.81856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.49 9.29 71.98 0.67 -4.82 16 2 C 0.06 2.12 5.66 86.30 0.49 2.61 16 3 N -0.47 -19.22 4.23 -705.22 -2.98 -22.20 16 4 C 0.19 8.90 2.84 85.55 0.24 9.15 16 5 C -0.52 -28.73 8.95 25.60 0.23 -28.50 16 6 H 0.05 3.14 7.41 -2.91 -0.02 3.11 16 7 C 0.02 1.20 5.47 84.65 0.46 1.67 16 8 N -0.94 -56.84 13.96 21.45 0.30 -56.55 16 9 Si 0.93 43.36 27.47 68.60 1.88 45.24 16 10 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.26 -11.49 6.54 99.48 0.65 -10.84 16 13 C 0.31 11.55 4.45 133.71 0.59 12.15 16 14 N -0.47 -17.06 8.91 -185.54 -1.65 -18.71 16 15 C 0.09 2.72 6.59 40.23 0.27 2.98 16 16 C -0.08 -1.78 9.98 22.33 0.22 -1.56 16 17 C -0.07 -1.05 9.72 22.06 0.21 -0.83 16 18 C -0.02 -0.31 6.28 22.09 0.14 -0.17 16 19 Cl -0.04 -0.55 28.91 -2.72 -0.08 -0.63 16 20 C -0.06 -1.35 9.72 22.35 0.22 -1.14 16 21 C 0.06 1.70 6.59 40.21 0.26 1.96 16 22 N -0.41 -12.77 10.43 -178.45 -1.86 -14.63 16 23 C 0.15 5.14 7.20 85.40 0.61 5.75 16 24 Cl 0.01 0.42 26.83 -2.72 -0.07 0.35 16 25 H 0.05 1.84 6.34 -2.39 -0.02 1.83 16 26 H 0.04 1.26 7.26 -2.38 -0.02 1.25 16 27 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.09 2.86 6.41 -2.39 -0.02 2.85 16 29 H 0.09 3.59 6.67 -2.39 -0.02 3.58 16 30 H 0.02 0.99 6.97 -2.39 -0.02 0.97 16 31 H 0.02 0.72 5.56 -2.39 -0.01 0.71 16 32 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 34 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -64.52 321.46 1.25 -63.27 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: 1.09 Total: 4.61 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 4.62 Total: -0.76 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -6.20 Total: -112.09 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.24 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -0.15 Total: -0.29 kcal Total: -64.52 1.25 -63.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591370.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.875 kcal (2) G-P(sol) polarization free energy of solvation -64.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds