Wall clock time and date at job start Tue Mar 31 2020 14:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46897 * 109.47026 * 2 1 4 4 C 1.46898 * 110.99629 * 199.29468 * 3 2 1 5 5 C 1.50701 * 109.47251 * 71.88686 * 4 3 2 6 6 H 1.08003 * 119.99842 * 355.20169 * 5 4 3 7 7 C 1.37876 * 120.00139 * 175.20846 * 5 4 3 8 8 N 1.31515 * 120.00110 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00058 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47291 * 90.00257 * 9 7 5 11 11 H 1.48501 * 109.47383 * 210.00123 * 9 7 5 12 12 H 1.48502 * 109.47051 * 330.00045 * 9 7 5 13 13 C 1.37843 * 110.99991 * 75.34370 * 3 2 1 14 14 N 1.32649 * 120.89947 * 58.49848 * 13 3 2 15 15 C 1.32450 * 121.47501 * 179.97438 * 14 13 3 16 16 Cl 1.73595 * 118.53075 * 180.02562 * 15 14 13 17 17 N 1.31329 * 122.93300 * 0.02562 * 15 14 13 18 18 C 1.34137 * 120.44902 * 359.97438 * 17 15 14 19 19 C 1.40130 * 121.98032 * 180.02562 * 18 17 15 20 20 C 1.36345 * 119.61432 * 179.97438 * 19 18 17 21 21 C 1.39144 * 121.05536 * 359.97438 * 20 19 18 22 22 C 1.36544 * 120.87588 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 120.26446 * 180.02562 * 22 21 20 24 24 C 1.40040 * 119.47437 * 359.97438 * 22 21 20 25 25 H 1.08990 * 109.46954 * 184.97245 * 1 2 3 26 26 H 1.08999 * 109.46586 * 304.97573 * 1 2 3 27 27 H 1.09001 * 109.46683 * 64.97176 * 1 2 3 28 28 H 1.08999 * 109.46933 * 239.99811 * 2 1 3 29 29 H 1.09002 * 109.46502 * 120.00208 * 2 1 3 30 30 H 1.09009 * 109.47158 * 191.88451 * 4 3 2 31 31 H 1.09004 * 109.47604 * 311.88497 * 4 3 2 32 32 H 0.96993 * 120.00393 * 179.97438 * 8 7 5 33 33 H 1.07998 * 120.19056 * 359.94982 * 19 18 17 34 34 H 1.08005 * 119.47061 * 179.97438 * 20 19 18 35 35 H 1.07994 * 119.56906 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4156 1.4498 -0.4532 5 6 3.4756 1.1821 -1.9350 6 1 2.5790 0.9075 -2.4709 7 6 4.6751 1.2875 -2.6066 8 7 4.7276 1.0534 -3.8996 9 14 6.2257 1.7630 -1.6798 10 1 6.8985 0.5375 -1.1790 11 1 7.1427 2.4937 -2.5911 12 1 5.8688 2.6358 -0.5326 13 6 1.8774 1.9592 1.2450 14 7 2.4563 1.4246 2.3120 15 6 2.3276 1.9670 3.5134 16 17 3.1188 1.2038 4.8569 17 7 1.6281 3.0565 3.7337 18 6 1.0015 3.6778 2.7234 19 6 0.2472 4.8420 2.9218 20 6 -0.3695 5.4344 1.8599 21 6 -0.2622 4.9019 0.5789 22 6 0.4646 3.7689 0.3497 23 17 0.5884 3.1185 -1.2551 24 6 1.1103 3.1363 1.4193 25 1 -0.3633 -1.0237 0.0891 26 1 -0.3632 0.5891 0.8421 27 1 -0.3633 0.4348 -0.9312 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8191 2.4411 -0.2464 31 1 4.0045 0.7003 0.0756 32 1 5.5714 1.1280 -4.3722 33 1 0.1547 5.2673 3.9102 34 1 -0.9506 6.3315 2.0155 35 1 -0.7603 5.3910 -0.2451 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591898.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:29 Heat of formation + Delta-G solvation = 65.715123 kcal Electronic energy + Delta-G solvation = -23281.127146 eV Core-core repulsion = 19752.356741 eV Total energy + Delta-G solvation = -3528.770405 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 325.044 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.71857 -39.49571 -38.91450 -37.79050 -36.99781 -35.01364 -34.26126 -32.56971 -31.98960 -31.14295 -29.11977 -25.80520 -25.54433 -24.08226 -23.59656 -22.08511 -20.04440 -19.28993 -19.07516 -18.02820 -17.26481 -16.73097 -16.56876 -16.31172 -15.78122 -15.74083 -15.46106 -14.92135 -14.53983 -14.45283 -14.28276 -13.66000 -13.22828 -13.09751 -13.03522 -12.97863 -12.81514 -12.63823 -12.60077 -12.31991 -12.14964 -12.08858 -11.84353 -11.68849 -11.50508 -11.45054 -10.81349 -10.66033 -10.37344 -9.42857 -9.27902 -8.29177 -6.30155 -1.14375 -0.59534 0.21131 0.52578 1.28516 1.30828 1.31782 1.38979 1.64762 2.29600 2.35620 2.70373 2.89349 3.03792 3.31679 3.51455 3.65481 3.77212 4.10586 4.19358 4.31755 4.41328 4.53832 4.61087 4.65967 4.75852 4.87409 4.93960 4.97591 5.05499 5.16687 5.27384 5.39746 5.49207 5.70506 5.75264 6.07004 6.45737 6.59858 6.74965 7.30921 8.86076 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.006252 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.686433 B = 4477.329043 C = 5705.104603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.057 3.943 3 N -0.465 5.465 4 C 0.190 3.810 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.026 3.974 8 N -0.935 5.935 9 Si 0.922 3.078 10 H -0.269 1.269 11 H -0.277 1.277 12 H -0.266 1.266 13 C 0.420 3.580 14 N -0.576 5.576 15 C 0.370 3.630 16 Cl 0.027 6.973 17 N -0.507 5.507 18 C 0.167 3.833 19 C -0.109 4.109 20 C -0.036 4.036 21 C -0.111 4.111 22 C 0.000 4.000 23 Cl -0.017 7.017 24 C -0.165 4.165 25 H 0.079 0.921 26 H 0.036 0.964 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.041 0.959 30 H 0.014 0.986 31 H -0.005 1.005 32 H 0.267 0.733 33 H 0.172 0.828 34 H 0.196 0.804 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.474 8.534 14.005 20.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.069 4.069 3 N -0.189 5.189 4 C 0.065 3.935 5 C -0.531 4.531 6 H 0.078 0.922 7 C -0.173 4.173 8 N -0.575 5.575 9 Si 0.748 3.252 10 H -0.194 1.194 11 H -0.203 1.203 12 H -0.191 1.191 13 C 0.172 3.828 14 N -0.298 5.298 15 C 0.074 3.926 16 Cl 0.055 6.945 17 N -0.226 5.226 18 C 0.040 3.960 19 C -0.128 4.128 20 C -0.057 4.057 21 C -0.130 4.130 22 C -0.030 4.030 23 Cl 0.013 6.987 24 C -0.172 4.172 25 H 0.097 0.903 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.032 0.968 31 H 0.013 0.987 32 H 0.077 0.923 33 H 0.190 0.810 34 H 0.213 0.787 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -12.116 8.279 14.362 20.533 hybrid contribution 1.564 -0.568 -0.131 1.669 sum -10.553 7.710 14.230 19.321 Atomic orbital electron populations 1.21666 0.93268 1.02135 1.01591 1.22176 0.96865 0.86112 1.01768 1.60527 1.22932 1.20566 1.14840 1.19892 0.82658 0.95279 0.95682 1.20893 0.95448 1.45540 0.91196 0.92215 1.25461 1.01322 0.95188 0.95304 1.69971 1.27357 1.51147 1.09052 0.86098 0.80778 0.79266 0.79089 1.19427 1.20263 1.19105 1.20849 0.84922 0.88772 0.88267 1.68066 1.25363 1.36851 0.99543 1.22936 0.92555 0.89317 0.87836 1.98405 1.76878 1.79165 1.40040 1.68305 1.10994 1.08762 1.34510 1.19227 0.95068 0.95859 0.85854 1.21114 0.96623 0.92372 1.02705 1.21542 0.95115 0.99574 0.89479 1.21494 0.97791 0.93398 1.00287 1.20928 0.98328 0.96173 0.87521 1.98498 1.96262 1.85357 1.18614 1.19307 1.03485 0.98263 0.96106 0.90251 0.94472 0.91810 0.90009 0.94042 0.96795 0.98724 0.92347 0.81017 0.78670 0.81104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 9.87 71.99 0.71 -3.25 16 2 C 0.06 2.16 5.48 86.31 0.47 2.63 16 3 N -0.47 -19.16 1.16 -704.56 -0.82 -19.97 16 4 C 0.19 9.19 3.66 85.56 0.31 9.51 16 5 C -0.49 -26.89 8.98 25.60 0.23 -26.66 16 6 H 0.06 3.53 7.78 -2.91 -0.02 3.51 16 7 C 0.03 1.47 5.47 84.65 0.46 1.93 16 8 N -0.93 -56.14 13.96 21.45 0.30 -55.84 16 9 Si 0.92 44.34 27.57 68.60 1.89 46.23 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.27 -12.59 6.41 99.48 0.64 -11.96 16 13 C 0.42 16.20 4.51 133.99 0.60 16.80 16 14 N -0.58 -22.39 9.52 -187.52 -1.78 -24.18 16 15 C 0.37 12.83 8.15 180.82 1.47 14.30 16 16 Cl 0.03 0.79 29.24 -2.72 -0.08 0.72 16 17 N -0.51 -16.21 10.40 -184.67 -1.92 -18.13 16 18 C 0.17 4.87 6.61 40.09 0.27 5.13 16 19 C -0.11 -2.06 10.01 22.29 0.22 -1.83 16 20 C -0.04 -0.49 9.94 22.05 0.22 -0.27 16 21 C -0.11 -2.09 9.74 22.09 0.22 -1.88 16 22 C 0.00 0.01 6.32 22.31 0.14 0.15 16 23 Cl -0.02 -0.59 25.33 -2.72 -0.07 -0.65 16 24 C -0.16 -5.48 5.76 -21.18 -0.12 -5.60 16 25 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.04 1.13 7.58 -2.39 -0.02 1.12 16 27 H 0.06 1.99 7.77 -2.39 -0.02 1.97 16 28 H 0.08 3.40 6.95 -2.39 -0.02 3.38 16 29 H 0.04 1.58 7.43 -2.39 -0.02 1.56 16 30 H 0.01 0.71 6.69 -2.38 -0.02 0.69 16 31 H -0.01 -0.25 7.72 -2.38 -0.02 -0.27 16 32 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 33 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.20 0.65 8.06 -2.91 -0.02 0.63 16 35 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -67.33 324.84 3.79 -63.54 By element: Atomic # 1 Polarization: -3.74 SS G_CDS: 1.06 Total: -2.67 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 5.21 Total: 10.97 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -4.22 Total: -118.13 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.89 Total: 46.23 kcal Atomic # 17 Polarization: 0.21 SS G_CDS: -0.15 Total: 0.06 kcal Total: -67.33 3.79 -63.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591898.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.258 kcal (2) G-P(sol) polarization free energy of solvation -67.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds