Wall clock time and date at job start Tue Mar 31 2020 15:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00441 * 2 1 4 4 H 1.48495 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47011 * 300.00184 * 3 2 1 6 6 H 1.48502 * 109.46799 * 60.00243 * 3 2 1 7 7 C 1.38776 * 119.99521 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99670 * 187.76161 * 7 2 1 9 9 N 1.36788 * 120.00119 * 7.76052 * 7 2 1 10 10 C 1.46502 * 119.99985 * 174.11840 * 9 7 2 11 11 C 1.50697 * 109.46917 * 275.26282 * 10 9 7 12 12 C 1.38235 * 119.99607 * 263.83295 * 11 10 9 13 13 C 1.38242 * 119.99916 * 179.76979 * 12 11 10 14 14 C 1.38240 * 119.99716 * 0.50481 * 13 12 11 15 15 C 1.38237 * 119.99774 * 359.74606 * 14 13 12 16 16 C 1.38227 * 120.00236 * 84.10988 * 11 10 9 17 17 C 1.39543 * 119.99876 * 354.11350 * 9 7 2 18 18 C 1.39708 * 120.87227 * 90.00798 * 17 9 7 19 19 F 1.35101 * 120.50358 * 359.97438 * 18 17 9 20 20 N 1.32458 * 118.99009 * 179.97438 * 18 17 9 21 21 C 1.32084 * 120.87067 * 359.97438 * 20 18 17 22 22 F 1.35092 * 119.03523 * 179.97438 * 21 20 18 23 23 N 1.32026 * 121.92922 * 359.97438 * 21 20 18 24 24 C 1.32462 * 120.91992 * 0.02562 * 23 21 20 25 25 Cl 1.73603 * 120.47807 * 179.97438 * 24 23 21 26 26 H 0.97006 * 119.99649 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47289 * 35.26427 * 10 9 7 28 28 H 1.09004 * 109.46653 * 155.26325 * 10 9 7 29 29 H 1.07996 * 120.00611 * 359.97438 * 12 11 10 30 30 H 1.07995 * 120.00435 * 180.23536 * 13 12 11 31 31 H 1.07995 * 120.00293 * 179.72573 * 14 13 12 32 32 H 1.08003 * 119.99536 * 179.97438 * 15 14 13 33 33 H 1.08004 * 120.00030 * 0.02562 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0099 -1.2019 -0.0005 8 1 3.0824 -1.2063 0.1258 9 7 1.3353 -2.3810 -0.1610 10 6 2.0772 -3.6376 -0.2909 11 6 2.4834 -3.8347 -1.7286 12 6 1.7081 -4.6160 -2.5649 13 6 2.0782 -4.7930 -3.8850 14 6 3.2292 -4.1973 -4.3660 15 6 4.0072 -3.4203 -3.5282 16 6 3.6344 -3.2391 -2.2095 17 6 -0.0596 -2.3869 -0.2010 18 6 -0.7427 -2.2472 -1.4116 19 9 -0.0626 -2.1029 -2.5701 20 7 -2.0672 -2.2585 -1.4064 21 6 -2.7393 -2.3997 -0.2782 22 9 -4.0897 -2.4055 -0.3158 23 7 -2.1300 -2.5353 0.8852 24 6 -0.8078 -2.5343 0.9653 25 17 -0.0186 -2.7128 2.5013 26 1 -0.4850 0.8401 0.0004 27 1 2.9677 -3.6003 0.3365 28 1 1.4446 -4.4672 0.0251 29 1 0.8115 -5.0854 -2.1879 30 1 1.4705 -5.4003 -4.5395 31 1 3.5208 -4.3392 -5.3961 32 1 4.9067 -2.9552 -3.9039 33 1 4.2427 -2.6327 -1.5548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166994959.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:05 Heat of formation + Delta-G solvation = 20.832945 kcal Electronic energy + Delta-G solvation = -25778.560195 eV Core-core repulsion = 21696.046873 eV Total energy + Delta-G solvation = -4082.513322 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.049 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.56060 -48.23428 -39.99362 -38.82836 -36.38994 -35.90610 -32.87439 -32.39223 -30.97008 -30.49084 -29.01217 -25.98242 -24.48449 -23.79630 -22.26583 -22.11201 -20.59815 -18.29171 -18.26241 -18.06140 -16.50206 -16.23030 -15.65810 -15.44924 -14.83764 -14.79426 -14.67101 -14.62039 -14.31241 -13.77029 -13.52009 -13.09493 -13.02478 -12.87241 -12.76339 -12.16927 -11.74352 -11.54004 -11.29627 -11.20639 -11.06692 -10.93982 -10.61678 -10.54880 -10.27761 -10.23210 -9.63134 -9.58124 -8.88142 -8.50142 -8.42221 -8.24596 -7.60821 -6.13525 -3.73429 1.49326 1.55518 1.77556 1.82774 2.30357 3.18772 3.23962 3.28209 3.60777 4.01108 4.12455 4.27054 4.41245 4.73946 5.02404 5.22080 5.27018 5.36646 5.47277 5.50328 5.70909 5.88632 5.95978 6.03026 6.12251 6.30871 6.40844 6.45386 6.85138 6.87512 6.96290 7.07847 7.16070 7.31389 7.42327 7.70634 8.29435 8.68565 9.19961 9.56814 10.78741 Molecular weight = 325.05amu Principal moments of inertia in cm(-1) A = 0.010642 B = 0.007096 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.446521 B = 3944.770707 C = 4954.604011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.000 4.000 3 Si 0.927 3.073 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.098 0.902 9 N -0.537 5.537 10 C 0.182 3.818 11 C -0.089 4.089 12 C -0.110 4.110 13 C -0.123 4.123 14 C -0.130 4.130 15 C -0.125 4.125 16 C -0.092 4.092 17 C 0.205 3.795 18 C 0.386 3.614 19 F -0.090 7.090 20 N -0.575 5.575 21 C 0.497 3.503 22 F -0.089 7.089 23 N -0.540 5.540 24 C 0.245 3.755 25 Cl -0.012 7.012 26 H 0.268 0.732 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.235 -7.900 -2.028 9.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.197 4.197 3 Si 0.756 3.244 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.115 0.885 9 N -0.252 5.252 10 C 0.058 3.942 11 C -0.091 4.091 12 C -0.129 4.129 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.144 4.144 16 C -0.110 4.110 17 C 0.100 3.900 18 C 0.222 3.778 19 F -0.069 7.069 20 N -0.304 5.304 21 C 0.217 3.783 22 F -0.069 7.069 23 N -0.265 5.265 24 C 0.072 3.928 25 Cl 0.016 6.984 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.311 -7.705 -1.899 8.598 hybrid contribution 0.772 1.408 -0.310 1.635 sum 4.082 -6.297 -2.208 7.823 Atomic orbital electron populations 1.69415 1.05482 1.26550 1.54206 1.24904 0.95653 0.98972 1.00174 0.85792 0.78824 0.82193 0.77583 1.19890 1.21228 1.21299 1.19536 0.92309 0.81594 1.43459 0.88452 1.41447 0.97358 1.04641 1.81707 1.20047 0.96411 0.86870 0.90862 1.20729 0.94346 0.95615 0.98450 1.20952 0.98918 0.99153 0.93870 1.20995 0.97045 1.00531 0.95552 1.20988 0.95794 0.98912 0.99143 1.21074 0.99821 0.99247 0.94213 1.20987 0.96560 0.98065 0.95412 1.17621 0.87637 0.95274 0.89449 1.18451 0.84285 0.92679 0.82353 1.91633 1.77197 1.91753 1.46274 1.66562 1.09326 1.22377 1.32144 1.17459 0.79257 0.98190 0.83441 1.91641 1.25177 1.93662 1.96379 1.66673 1.11516 1.20305 1.28026 1.22184 0.86745 0.95961 0.87896 1.98357 1.77600 1.94925 1.27469 0.91934 0.90588 0.92288 0.87283 0.86884 0.86979 0.86800 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.52 9.39 55.49 0.52 -23.00 16 2 C 0.00 0.00 5.44 -17.45 -0.09 -0.09 16 3 Si 0.93 20.08 29.56 -169.99 -5.02 15.05 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.24 -5.47 9.77 -15.14 -0.15 -5.62 16 8 H 0.10 2.08 7.84 -52.49 -0.41 1.67 16 9 N -0.54 -11.17 1.95 -114.10 -0.22 -11.39 16 10 C 0.18 3.10 5.80 -5.19 -0.03 3.07 16 11 C -0.09 -1.47 5.43 -104.63 -0.57 -2.04 16 12 C -0.11 -1.74 9.20 -39.58 -0.36 -2.11 16 13 C -0.12 -1.78 10.05 -39.58 -0.40 -2.17 16 14 C -0.13 -1.80 10.05 -39.58 -0.40 -2.19 16 15 C -0.13 -1.80 10.05 -39.58 -0.40 -2.19 16 16 C -0.09 -1.45 9.72 -39.59 -0.38 -1.83 16 17 C 0.21 4.54 2.88 -83.38 -0.24 4.30 16 18 C 0.39 8.86 7.50 -16.73 -0.13 8.73 16 19 F -0.09 -2.08 16.69 2.25 0.04 -2.04 16 20 N -0.57 -13.12 10.45 -15.07 -0.16 -13.28 16 21 C 0.50 10.91 9.45 -91.71 -0.87 10.04 16 22 F -0.09 -1.77 17.32 2.25 0.04 -1.73 16 23 N -0.54 -11.94 10.44 -11.88 -0.12 -12.07 16 24 C 0.24 5.34 6.63 -16.86 -0.11 5.23 16 25 Cl -0.01 -0.23 28.72 -51.86 -1.49 -1.72 16 26 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.08 1.18 8.06 -51.93 -0.42 0.76 16 28 H 0.06 0.93 7.91 -51.93 -0.41 0.52 16 29 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 30 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 32 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 33 H 0.12 1.83 8.06 -52.48 -0.42 1.40 16 LS Contribution 320.21 15.07 4.83 4.83 Total: -1.00 -26.25 320.21 -8.21 -34.47 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: -2.49 Total: -2.23 kcal Atomic # 6 Polarization: 17.25 SS G_CDS: -4.13 Total: 13.12 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.02 Total: -59.74 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.08 Total: -3.77 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.49 Total: -1.72 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.25 -8.21 -34.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166994959.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.300 kcal (2) G-P(sol) polarization free energy of solvation -26.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds