Wall clock time and date at job start Tue Mar 31 2020 15:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00441 * 2 1 4 4 H 1.48495 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47011 * 300.00184 * 3 2 1 6 6 H 1.48502 * 109.46799 * 60.00243 * 3 2 1 7 7 C 1.38776 * 119.99521 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99670 * 187.76161 * 7 2 1 9 9 N 1.36788 * 120.00119 * 7.76052 * 7 2 1 10 10 C 1.46502 * 119.99985 * 174.11840 * 9 7 2 11 11 C 1.50697 * 109.46917 * 275.26282 * 10 9 7 12 12 C 1.38235 * 119.99607 * 263.83295 * 11 10 9 13 13 C 1.38242 * 119.99916 * 179.76979 * 12 11 10 14 14 C 1.38240 * 119.99716 * 0.50481 * 13 12 11 15 15 C 1.38237 * 119.99774 * 359.74606 * 14 13 12 16 16 C 1.38227 * 120.00236 * 84.10988 * 11 10 9 17 17 C 1.39543 * 119.99876 * 354.11350 * 9 7 2 18 18 C 1.39708 * 120.87227 * 90.00798 * 17 9 7 19 19 F 1.35101 * 120.50358 * 359.97438 * 18 17 9 20 20 N 1.32458 * 118.99009 * 179.97438 * 18 17 9 21 21 C 1.32084 * 120.87067 * 359.97438 * 20 18 17 22 22 F 1.35092 * 119.03523 * 179.97438 * 21 20 18 23 23 N 1.32026 * 121.92922 * 359.97438 * 21 20 18 24 24 C 1.32462 * 120.91992 * 0.02562 * 23 21 20 25 25 Cl 1.73603 * 120.47807 * 179.97438 * 24 23 21 26 26 H 0.97006 * 119.99649 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47289 * 35.26427 * 10 9 7 28 28 H 1.09004 * 109.46653 * 155.26325 * 10 9 7 29 29 H 1.07996 * 120.00611 * 359.97438 * 12 11 10 30 30 H 1.07995 * 120.00435 * 180.23536 * 13 12 11 31 31 H 1.07995 * 120.00293 * 179.72573 * 14 13 12 32 32 H 1.08003 * 119.99536 * 179.97438 * 15 14 13 33 33 H 1.08004 * 120.00030 * 0.02562 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0099 -1.2019 -0.0005 8 1 3.0824 -1.2063 0.1258 9 7 1.3353 -2.3810 -0.1610 10 6 2.0772 -3.6376 -0.2909 11 6 2.4834 -3.8347 -1.7286 12 6 1.7081 -4.6160 -2.5649 13 6 2.0782 -4.7930 -3.8850 14 6 3.2292 -4.1973 -4.3660 15 6 4.0072 -3.4203 -3.5282 16 6 3.6344 -3.2391 -2.2095 17 6 -0.0596 -2.3869 -0.2010 18 6 -0.7427 -2.2472 -1.4116 19 9 -0.0626 -2.1029 -2.5701 20 7 -2.0672 -2.2585 -1.4064 21 6 -2.7393 -2.3997 -0.2782 22 9 -4.0897 -2.4055 -0.3158 23 7 -2.1300 -2.5353 0.8852 24 6 -0.8078 -2.5343 0.9653 25 17 -0.0186 -2.7128 2.5013 26 1 -0.4850 0.8401 0.0004 27 1 2.9677 -3.6003 0.3365 28 1 1.4446 -4.4672 0.0251 29 1 0.8115 -5.0854 -2.1879 30 1 1.4705 -5.4003 -4.5395 31 1 3.5208 -4.3392 -5.3961 32 1 4.9067 -2.9552 -3.9039 33 1 4.2427 -2.6327 -1.5548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166994959.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:04 Heat of formation + Delta-G solvation = 9.590944 kcal Electronic energy + Delta-G solvation = -25779.047685 eV Core-core repulsion = 21696.046873 eV Total energy + Delta-G solvation = -4083.000812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.049 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.22042 -50.00993 -41.69176 -40.03177 -37.98156 -37.52631 -34.60589 -33.95573 -32.48930 -31.62912 -30.59698 -27.48413 -26.14155 -25.53004 -23.82642 -23.28681 -21.86700 -20.02095 -19.97320 -19.77925 -18.00551 -17.61448 -17.36330 -17.04112 -16.45216 -16.40971 -16.28368 -15.94299 -15.70418 -15.41417 -15.19339 -14.68746 -14.52965 -14.14943 -14.11896 -13.50011 -13.27007 -13.12929 -12.99212 -12.86933 -12.58673 -12.35774 -12.17253 -11.99166 -11.86050 -11.67713 -11.31357 -11.26057 -10.65785 -10.03455 -9.64571 -9.54889 -9.28639 -7.93895 -5.53049 -0.21433 -0.17631 0.59970 0.62716 0.67886 1.46466 1.50565 1.57662 1.89217 2.35467 2.43006 2.69114 2.88388 3.21394 3.27521 3.79730 4.03292 4.07659 4.27912 4.32889 4.39477 4.42138 4.49914 4.75508 4.90104 4.97065 5.25044 5.26898 5.31572 5.42511 5.53163 5.71843 5.75443 5.87161 5.97046 6.29465 6.55978 6.89585 7.50433 7.81866 8.95204 Molecular weight = 325.05amu Principal moments of inertia in cm(-1) A = 0.010642 B = 0.007096 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.446521 B = 3944.770707 C = 4954.604011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.049 4.049 3 Si 0.974 3.026 4 H -0.255 1.255 5 H -0.304 1.304 6 H -0.298 1.298 7 C -0.225 4.225 8 H 0.112 0.888 9 N -0.542 5.542 10 C 0.180 3.820 11 C -0.104 4.104 12 C -0.124 4.124 13 C -0.130 4.130 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.106 4.106 17 C 0.207 3.793 18 C 0.374 3.626 19 F -0.096 7.096 20 N -0.585 5.585 21 C 0.493 3.507 22 F -0.078 7.078 23 N -0.544 5.544 24 C 0.238 3.762 25 Cl 0.009 6.991 26 H 0.253 0.747 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.133 0.867 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.698 -8.626 -2.481 10.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.242 4.242 3 Si 0.803 3.197 4 H -0.179 1.179 5 H -0.232 1.232 6 H -0.226 1.226 7 C -0.352 4.352 8 H 0.129 0.871 9 N -0.258 5.258 10 C 0.057 3.943 11 C -0.107 4.107 12 C -0.143 4.143 13 C -0.148 4.148 14 C -0.148 4.148 15 C -0.148 4.148 16 C -0.125 4.125 17 C 0.102 3.898 18 C 0.210 3.790 19 F -0.074 7.074 20 N -0.315 5.315 21 C 0.213 3.787 22 F -0.058 7.058 23 N -0.270 5.270 24 C 0.065 3.935 25 Cl 0.037 6.963 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.086 0.914 29 H 0.125 0.875 30 H 0.151 0.849 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.815 -8.471 -2.353 10.024 hybrid contribution 0.366 1.528 -0.183 1.582 sum 5.181 -6.943 -2.537 9.027 Atomic orbital electron populations 1.69555 1.06431 1.25684 1.56793 1.25437 0.96055 1.01141 1.01573 0.85044 0.79071 0.79599 0.75958 1.17864 1.23167 1.22588 1.19849 0.92868 0.81890 1.40564 0.87074 1.41653 0.97014 1.05447 1.81641 1.20223 0.96699 0.85487 0.91882 1.20654 0.95207 0.96795 0.98007 1.21078 0.98990 0.99548 0.94695 1.21305 0.97597 1.00637 0.95285 1.21369 0.95127 0.97822 1.00456 1.21398 1.00656 0.99037 0.93694 1.21150 0.96572 0.98353 0.96377 1.17666 0.88364 0.94563 0.89209 1.18625 0.84428 0.93353 0.82545 1.91605 1.77312 1.91921 1.46609 1.66531 1.09589 1.22735 1.32637 1.17551 0.79679 0.98089 0.83355 1.91660 1.24284 1.93546 1.96331 1.66739 1.11756 1.20507 1.27982 1.22405 0.86793 0.95474 0.88827 1.98355 1.77188 1.94737 1.26005 0.93525 0.89076 0.91440 0.87476 0.84937 0.84184 0.84480 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -48.50 9.39 21.64 0.20 -48.30 16 2 C -0.05 -2.32 5.44 84.85 0.46 -1.86 16 3 Si 0.97 40.88 29.56 68.60 2.03 42.91 16 4 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 5 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 6 H -0.30 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.22 -9.81 9.77 84.05 0.82 -8.99 16 8 H 0.11 4.49 7.84 -2.91 -0.02 4.47 16 9 N -0.54 -21.95 1.95 -514.89 -1.01 -22.96 16 10 C 0.18 5.86 5.80 85.63 0.50 6.36 16 11 C -0.10 -3.31 5.43 -19.87 -0.11 -3.42 16 12 C -0.12 -3.79 9.20 22.27 0.20 -3.58 16 13 C -0.13 -3.49 10.05 22.27 0.22 -3.27 16 14 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 15 C -0.13 -3.38 10.05 22.27 0.22 -3.16 16 16 C -0.11 -3.14 9.72 22.27 0.22 -2.93 16 17 C 0.21 9.05 2.88 38.54 0.11 9.16 16 18 C 0.37 17.12 7.50 84.95 0.64 17.76 16 19 F -0.10 -4.42 16.69 44.97 0.75 -3.67 16 20 N -0.59 -26.73 10.45 -201.60 -2.11 -28.84 16 21 C 0.49 21.56 9.45 180.73 1.71 23.27 16 22 F -0.08 -3.09 17.32 44.97 0.78 -2.31 16 23 N -0.54 -23.85 10.44 -191.48 -2.00 -25.85 16 24 C 0.24 10.23 6.63 84.87 0.56 10.79 16 25 Cl 0.01 0.32 28.72 -2.72 -0.08 0.24 16 26 H 0.25 13.56 8.31 -92.70 -0.77 12.79 16 27 H 0.09 2.65 8.06 -2.39 -0.02 2.63 16 28 H 0.07 2.05 7.91 -2.38 -0.02 2.03 16 29 H 0.11 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.12 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -54.38 320.21 5.52 -48.85 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: 1.17 Total: 2.77 kcal Atomic # 6 Polarization: 31.37 SS G_CDS: 5.78 Total: 37.15 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -4.91 Total: -125.95 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 1.53 Total: -5.98 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -0.08 Total: 0.24 kcal Total: -54.38 5.52 -48.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166994959.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.443 kcal (2) G-P(sol) polarization free energy of solvation -54.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds