Wall clock time and date at job start Tue Mar 31 2020 15:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.43201 * 119.99927 * 178.50935 * 3 2 1 5 5 N 3.51031 * 140.69004 * 178.50907 * 2 1 3 6 6 C 1.41161 * 120.00242 * 358.50735 * 3 2 1 7 7 C 1.39012 * 120.00277 * 354.49848 * 6 3 2 8 8 H 1.07999 * 119.99584 * 341.00453 * 7 6 3 9 9 C 1.40826 * 120.00426 * 161.00904 * 7 6 3 10 10 N 1.30338 * 119.99712 * 349.91220 * 9 7 6 11 11 Si 1.86800 * 120.00064 * 169.91578 * 9 7 6 12 12 H 1.48502 * 109.47199 * 89.99751 * 11 9 7 13 13 H 1.48500 * 109.46732 * 209.99566 * 11 9 7 14 14 H 1.48500 * 109.47222 * 329.99407 * 11 9 7 15 15 N 1.38279 * 119.99942 * 174.49354 * 6 3 2 16 16 C 1.39845 * 119.99759 * 118.09884 * 15 6 3 17 17 C 1.38901 * 120.04476 * 353.64407 * 16 15 6 18 18 C 1.38272 * 119.92756 * 180.02562 * 17 16 15 19 19 F 1.35101 * 119.99172 * 179.97438 * 18 17 16 20 20 C 1.38716 * 120.00789 * 359.96183 * 18 17 16 21 21 F 1.35099 * 119.96112 * 180.02562 * 20 18 17 22 22 C 1.38386 * 120.07650 * 0.03473 * 20 18 17 23 23 C 1.50700 * 119.96010 * 180.02562 * 22 20 18 24 24 F 1.39903 * 109.46896 * 119.97910 * 23 22 20 25 25 F 1.39897 * 109.47375 * 239.97952 * 23 22 20 26 26 C 1.38159 * 120.07752 * 359.97438 * 22 20 18 27 27 H 0.97004 * 120.00150 * 185.06529 * 10 9 7 28 28 H 0.96995 * 120.00195 * 298.09476 * 15 6 3 29 29 H 1.08003 * 120.03469 * 0.02562 * 17 16 15 30 30 H 1.09004 * 109.47370 * 359.97438 * 23 22 20 31 31 H 1.08003 * 120.00261 * 179.72315 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2834 1.2407 -0.0323 5 7 3.8520 2.2231 -0.0579 6 6 3.2744 -1.2211 0.0318 7 6 2.5848 -2.4192 0.1785 8 1 1.5778 -2.4182 0.5689 9 6 3.1991 -3.6340 -0.1818 10 7 4.3289 -3.6253 -0.8317 11 14 2.3949 -5.2579 0.2715 12 1 1.4836 -5.6813 -0.8219 13 1 3.4431 -6.2909 0.4702 14 1 1.6187 -5.0925 1.5267 15 7 4.6524 -1.2262 -0.0830 16 6 5.4393 -1.7186 0.9629 17 6 4.8487 -2.0796 2.1672 18 6 5.6292 -2.5657 3.1999 19 9 5.0561 -2.9168 4.3719 20 6 7.0003 -2.6933 3.0325 21 9 7.7618 -3.1688 4.0420 22 6 7.5889 -2.3337 1.8328 23 6 9.0787 -2.4739 1.6537 24 9 9.3406 -3.3477 0.5930 25 9 9.6347 -1.2210 1.3739 26 6 6.8123 -1.8474 0.7988 27 1 4.7152 -4.4584 -1.1442 28 1 5.0732 -0.8882 -0.8889 29 1 3.7810 -1.9807 2.2967 30 1 9.5190 -2.8705 2.5686 31 1 7.2736 -1.5630 -0.1354 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169082989.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:50 Heat of formation + Delta-G solvation = -116.798503 kcal Electronic energy + Delta-G solvation = -26697.937937 eV Core-core repulsion = 22057.659787 eV Total energy + Delta-G solvation = -4640.278150 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.053 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.50742 -50.02424 -49.51815 -48.00431 -40.80962 -38.51095 -36.95876 -36.53842 -35.12628 -32.90072 -32.44283 -29.48973 -28.85139 -27.37006 -23.99701 -23.72267 -22.46107 -20.70128 -19.49976 -19.20149 -18.66272 -18.57272 -18.29586 -17.88709 -17.39714 -17.23932 -17.20831 -16.48241 -16.25289 -15.96265 -15.49375 -15.27742 -14.93215 -14.60969 -14.40117 -14.37810 -14.33421 -13.97416 -13.90210 -13.77526 -13.57429 -13.42987 -13.39644 -13.18664 -13.10257 -12.80957 -12.69587 -12.63942 -12.08568 -11.94527 -11.57206 -11.29409 -10.12260 -9.83587 -9.26344 -8.33552 -7.17621 -0.18412 0.00123 0.64322 1.36977 1.49986 1.53072 2.03030 2.07534 2.21674 2.25426 2.38243 2.45127 2.58834 2.71222 2.89694 3.10780 3.34033 3.40026 3.62692 3.81153 3.87429 3.98686 4.08134 4.20882 4.59039 4.64497 4.68148 4.80985 4.91830 5.10490 5.35423 5.48720 5.72783 6.00709 6.14952 6.63350 6.86542 7.19891 7.35189 7.67284 Molecular weight = 325.05amu Principal moments of inertia in cm(-1) A = 0.011102 B = 0.005400 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.418390 B = 5183.961706 C = 6044.621452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C 0.328 3.672 3 C -0.321 4.321 4 C 0.317 3.683 5 N -0.556 5.556 6 C 0.368 3.632 7 C -0.366 4.366 8 H 0.108 0.892 9 C 0.051 3.949 10 N -0.710 5.710 11 Si 0.964 3.036 12 H -0.256 1.256 13 H -0.257 1.257 14 H -0.253 1.253 15 N -0.647 5.647 16 C 0.272 3.728 17 C -0.187 4.187 18 C 0.106 3.894 19 F -0.131 7.131 20 C 0.022 3.978 21 F -0.132 7.132 22 C -0.134 4.134 23 C 0.322 3.678 24 F -0.199 7.199 25 F -0.200 7.200 26 C -0.132 4.132 27 H 0.316 0.684 28 H 0.413 0.587 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.429 -9.382 3.190 14.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.240 5.240 2 C 0.022 3.978 3 C -0.340 4.340 4 C 0.011 3.989 5 N -0.239 5.239 6 C 0.264 3.736 7 C -0.393 4.393 8 H 0.126 0.874 9 C -0.182 4.182 10 N -0.328 5.328 11 Si 0.783 3.217 12 H -0.181 1.181 13 H -0.181 1.181 14 H -0.176 1.176 15 N -0.266 5.266 16 C 0.165 3.835 17 C -0.211 4.211 18 C 0.085 3.915 19 F -0.110 7.110 20 C -0.001 4.001 21 F -0.110 7.110 22 C -0.136 4.136 23 C 0.268 3.732 24 F -0.180 7.180 25 F -0.182 7.182 26 C -0.155 4.155 27 H 0.129 0.871 28 H 0.252 0.748 29 H 0.169 0.831 30 H 0.168 0.832 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.687 -7.994 3.119 12.941 hybrid contribution -0.137 -0.830 -0.079 0.845 sum 9.550 -8.824 3.041 13.354 Atomic orbital electron populations 1.81067 1.12880 1.09350 1.20705 1.24891 0.91552 0.91520 0.89876 1.12962 0.82470 0.86216 1.52311 1.25256 0.92064 0.91737 0.89879 1.81058 1.10531 1.11456 1.20820 1.16650 0.80995 0.89759 0.86227 1.20574 1.01134 0.90536 1.27048 0.87445 1.26876 0.94440 1.04259 0.92602 1.69427 1.12774 1.34230 1.16385 0.85330 0.79705 0.75753 0.80865 1.18061 1.18124 1.17619 1.41426 1.03187 1.64535 1.17477 1.17203 0.89706 0.89778 0.86776 1.20851 1.01980 1.06289 0.91945 1.17193 0.89364 1.02026 0.82941 1.91502 1.84823 1.89736 1.44916 1.16815 0.87255 1.09112 0.86889 1.91457 1.74749 1.86565 1.58277 1.19891 0.96135 1.04285 0.93333 1.20322 0.88440 0.74754 0.89650 1.93019 1.94721 1.69305 1.60980 1.93018 1.86426 1.43638 1.95087 1.20381 0.91376 1.03850 0.99859 0.87144 0.74844 0.83065 0.83210 0.83077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -25.27 18.54 19.00 0.35 -24.92 16 2 C 0.33 14.13 13.94 88.33 1.23 15.36 16 3 C -0.32 -12.84 5.88 -20.07 -0.12 -12.96 16 4 C 0.32 13.35 14.82 88.34 1.31 14.66 16 5 N -0.56 -24.72 18.53 19.00 0.35 -24.37 16 6 C 0.37 13.32 4.92 39.03 0.19 13.51 16 7 C -0.37 -13.01 7.00 23.09 0.16 -12.85 16 8 H 0.11 3.96 7.09 -2.91 -0.02 3.94 16 9 C 0.05 1.63 4.82 85.55 0.41 2.04 16 10 N -0.71 -22.30 10.94 21.98 0.24 -22.06 16 11 Si 0.96 26.38 29.58 68.60 2.03 28.41 16 12 H -0.26 -7.07 7.11 99.48 0.71 -6.37 16 13 H -0.26 -6.80 7.11 99.48 0.71 -6.09 16 14 H -0.25 -7.23 7.11 99.48 0.71 -6.52 16 15 N -0.65 -20.96 3.28 -179.76 -0.59 -21.54 16 16 C 0.27 8.38 5.13 38.17 0.20 8.57 16 17 C -0.19 -5.95 8.60 22.44 0.19 -5.76 16 18 C 0.11 3.22 7.30 22.39 0.16 3.38 16 19 F -0.13 -4.07 17.18 44.97 0.77 -3.30 16 20 C 0.02 0.60 7.25 22.42 0.16 0.77 16 21 F -0.13 -3.44 16.09 44.97 0.72 -2.72 16 22 C -0.13 -3.48 5.37 -19.85 -0.11 -3.59 16 23 C 0.32 7.04 5.43 71.24 0.39 7.42 16 24 F -0.20 -4.75 17.26 44.97 0.78 -3.97 16 25 F -0.20 -4.86 17.26 44.97 0.78 -4.08 16 26 C -0.13 -3.64 9.44 22.40 0.21 -3.43 16 27 H 0.32 8.92 8.29 -92.71 -0.77 8.15 16 28 H 0.41 12.61 8.84 -92.71 -0.82 11.79 16 29 H 0.15 5.04 6.27 -2.91 -0.02 5.02 16 30 H 0.15 2.44 7.12 -2.38 -0.02 2.43 16 31 H 0.15 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -45.62 315.55 10.28 -35.34 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.45 Total: 16.10 kcal Atomic # 6 Polarization: 22.73 SS G_CDS: 4.39 Total: 27.13 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: 0.36 Total: -92.89 kcal Atomic # 9 Polarization: -17.13 SS G_CDS: 3.05 Total: -14.08 kcal Atomic # 14 Polarization: 26.38 SS G_CDS: 2.03 Total: 28.41 kcal Total: -45.62 10.28 -35.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082989.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.461 kcal (2) G-P(sol) polarization free energy of solvation -45.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 10.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds