Wall clock time and date at job start Tue Mar 31 2020 15:07:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30741 * 1
3 3 Si 1.86799 * 120.00095 * 2 1
4 4 H 1.48495 * 109.47157 * 270.00548 * 3 2 1
5 5 H 1.48502 * 109.46820 * 29.99930 * 3 2 1
6 6 H 1.48494 * 109.47336 * 149.99876 * 3 2 1
7 7 C 1.40131 * 120.00046 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99969 * 197.53544 * 7 2 1
9 9 C 1.40763 * 120.00015 * 17.54218 * 7 2 1
10 10 C 1.40420 * 120.42313 * 24.40635 * 9 7 2
11 11 C 1.39977 * 117.97245 * 180.27713 * 10 9 7
12 12 C 1.40797 * 121.39121 * 179.69929 * 11 10 9
13 13 C 1.36123 * 119.46826 * 180.02562 * 12 11 10
14 14 C 1.39184 * 121.47978 * 359.96464 * 13 12 11
15 15 C 1.36230 * 121.75757 * 0.03997 * 14 13 12
16 16 C 1.40527 * 119.70358 * 359.97438 * 15 14 13
17 17 N 1.33573 * 120.97999 * 179.97438 * 16 15 14
18 18 C 1.31689 * 121.74422 * 180.02562 * 17 16 15
19 19 C 1.47651 * 119.45324 * 179.97438 * 18 17 16
20 20 C 1.38769 * 123.64589 * 237.33220 * 19 18 17
21 21 C 1.33320 * 115.07340 * 179.97438 * 20 19 18
22 22 S 1.70515 * 111.43609 * 359.75963 * 21 20 19
23 23 C 1.38260 * 123.64966 * 57.33010 * 19 18 17
24 24 C 1.46300 * 125.50627 * 359.96187 * 23 19 18
25 25 O 1.21640 * 120.00612 * 5.35123 * 24 23 19
26 26 O 1.34935 * 119.99966 * 185.35016 * 24 23 19
27 27 H 0.96991 * 120.00245 * 359.97438 * 1 2 3
28 28 H 1.08002 * 121.01064 * 0.02562 * 10 9 7
29 29 H 1.07997 * 120.26643 * 0.02562 * 12 11 10
30 30 H 1.08007 * 119.25969 * 179.97438 * 13 12 11
31 31 H 1.07994 * 119.11892 * 180.02562 * 14 13 12
32 32 H 1.07994 * 120.14511 * 179.97438 * 15 14 13
33 33 H 1.07999 * 122.46593 * 0.02562 * 20 19 18
34 34 H 1.07998 * 124.28091 * 179.97438 * 21 20 19
35 35 H 0.96695 * 113.99852 * 180.02562 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3074 0.0000 0.0000
3 14 2.2414 1.6177 0.0000
4 1 2.4888 2.0464 -1.4000
5 1 1.4388 2.6526 0.7000
6 1 3.5389 1.4402 0.7000
7 6 2.0081 -1.2136 0.0005
8 1 3.0505 -1.2352 0.2824
9 6 1.3534 -2.4044 -0.3664
10 6 0.2205 -2.3667 -1.1952
11 6 -0.3938 -3.5810 -1.5231
12 6 -1.5371 -3.6265 -2.3436
13 6 -2.1033 -4.8291 -2.6372
14 6 -1.5770 -6.0198 -2.1447
15 6 -0.4732 -6.0399 -1.3464
16 6 0.1606 -4.8333 -1.0041
17 7 1.2439 -4.8234 -0.2228
18 6 1.8494 -3.7017 0.1079
19 6 3.0434 -3.7495 0.9753
20 6 3.1417 -3.0781 2.1857
21 6 4.2976 -3.2410 2.8299
22 16 5.3550 -4.2610 1.9644
23 6 4.1843 -4.4680 0.6693
24 6 4.3825 -5.2759 -0.5342
25 8 3.5399 -5.2772 -1.4115
26 8 5.5000 -6.0197 -0.6710
27 1 -0.4850 0.8399 0.0004
28 1 -0.1674 -1.4291 -1.5651
29 1 -1.9615 -2.7146 -2.7368
30 1 -2.9805 -4.8600 -3.2665
31 1 -2.0566 -6.9525 -2.4021
32 1 -0.0872 -6.9789 -0.9784
33 1 2.3405 -2.4691 2.5776
34 1 4.5329 -2.7873 3.7813
35 1 5.5416 -6.5183 -1.4984
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001205547738.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:07:27
Heat of formation + Delta-G solvation = -12.576458 kcal
Electronic energy + Delta-G solvation = -24344.528344 eV
Core-core repulsion = 20784.546767 eV
Total energy + Delta-G solvation = -3559.981578 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 325.056 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-39.75427 -38.91550 -37.51691 -35.53884 -35.48160 -34.18417 -31.66973 -30.24918
-29.49730 -28.61851 -25.76908 -25.23480 -22.41597 -21.92118 -21.76358 -20.53039
-18.71138 -18.38128 -17.84562 -17.09454 -16.29404 -16.01699 -15.50842 -15.16303
-14.90115 -14.66829 -14.09847 -13.52810 -13.37082 -13.02654 -12.88075 -12.76090
-12.37632 -12.34652 -12.06104 -11.89461 -11.62768 -11.40184 -11.16092 -11.04012
-10.82564 -10.80711 -10.46944 -10.44529 -10.10220 -9.88989 -9.59471 -8.98099
-8.58717 -8.33855 -8.05681 -7.41231 -7.12740 -7.02682 -4.58031 0.70858
1.64286 1.81456 2.06715 2.24229 2.71726 2.84957 2.91904 2.93787
3.34287 3.47500 3.55010 3.68730 3.91932 4.64974 5.06018 5.40555
5.49802 5.69426 5.71148 5.73021 5.83761 5.94563 6.21933 6.24867
6.33077 6.37774 6.53124 6.68065 6.69997 6.75935 6.81358 6.91543
7.05454 7.28528 7.40710 7.43973 7.67832 7.75041 7.94090 8.24896
8.27917 8.42082 8.52051 9.28241 9.80683
Molecular weight = 325.06amu
Principal moments of inertia in cm(-1)
A = 0.008457 B = 0.007230 C = 0.004326
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3309.898152 B = 3871.679331 C = 6471.108943
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.766 5.766
2 C 0.074 3.926
3 Si 0.911 3.089
4 H -0.264 1.264
5 H -0.274 1.274
6 H -0.257 1.257
7 C -0.424 4.424
8 H 0.088 0.912
9 C 0.085 3.915
10 C -0.175 4.175
11 C -0.042 4.042
12 C -0.132 4.132
13 C -0.116 4.116
14 C -0.182 4.182
15 C -0.053 4.053
16 C 0.030 3.970
17 N -0.426 5.426
18 C 0.116 3.884
19 C 0.090 3.910
20 C -0.116 4.116
21 C -0.235 4.235
22 S 0.195 5.805
23 C -0.260 4.260
24 C 0.544 3.456
25 O -0.473 6.473
26 O -0.515 6.515
27 H 0.288 0.712
28 H 0.133 0.867
29 H 0.110 0.890
30 H 0.103 0.897
31 H 0.104 0.896
32 H 0.111 0.889
33 H 0.153 0.847
34 H 0.168 0.832
35 H 0.406 0.594
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.379 -3.122 2.708 7.601
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.388 5.388
2 C -0.148 4.148
3 Si 0.735 3.265
4 H -0.188 1.188
5 H -0.199 1.199
6 H -0.181 1.181
7 C -0.452 4.452
8 H 0.106 0.894
9 C 0.080 3.920
10 C -0.200 4.200
11 C -0.044 4.044
12 C -0.151 4.151
13 C -0.134 4.134
14 C -0.202 4.202
15 C -0.072 4.072
16 C -0.094 4.094
17 N -0.132 5.132
18 C -0.041 4.041
19 C 0.073 3.927
20 C -0.147 4.147
21 C -0.372 4.372
22 S 0.464 5.536
23 C -0.379 4.379
24 C 0.386 3.614
25 O -0.360 6.360
26 O -0.327 6.327
27 H 0.100 0.900
28 H 0.150 0.850
29 H 0.128 0.872
30 H 0.121 0.879
31 H 0.122 0.878
32 H 0.129 0.871
33 H 0.171 0.829
34 H 0.185 0.815
35 H 0.263 0.737
Dipole moment (debyes) X Y Z Total
from point charges 7.647 -4.139 3.420 9.343
hybrid contribution -1.518 1.892 -1.042 2.639
sum 6.129 -2.247 2.378 6.948
Atomic orbital electron populations
1.69765 1.07824 1.30230 1.31030 1.26053 0.94818 1.01777 0.92189
0.86222 0.80637 0.79790 0.79874 1.18847 1.19871 1.18066 1.19617
0.98202 0.90636 1.36726 0.89430 1.19088 0.92154 0.90906 0.89881
1.21464 1.00169 0.95690 1.02705 1.19701 0.94714 0.93987 0.96028
1.20839 0.96602 0.97091 1.00531 1.20463 0.99549 0.92883 1.00498
1.20235 0.99194 0.97168 1.03641 1.20486 0.94364 0.95943 0.96387
1.19216 0.95519 0.92113 1.02508 1.67299 1.06418 1.29068 1.10424
1.20297 0.95222 0.89434 0.99169 1.18013 0.91138 0.90935 0.92567
1.20063 0.98882 1.01638 0.94162 1.25091 0.99394 1.06680 1.06008
1.82751 1.16995 1.43263 1.10624 1.23485 1.00835 1.12615 1.00985
1.19283 0.79071 0.77458 0.85589 1.91051 1.42583 1.61679 1.40668
1.84992 1.42700 1.58798 1.46185 0.90036 0.84961 0.87170 0.87926
0.87796 0.87131 0.82941 0.81494 0.73711
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.77 -17.91 10.95 55.56 0.61 -17.30 16
2 C 0.07 1.66 5.16 -17.31 -0.09 1.57 16
3 Si 0.91 16.93 29.60 -169.99 -5.03 11.90 16
4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16
5 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16
6 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16
7 C -0.42 -10.16 7.97 -37.92 -0.30 -10.46 16
8 H 0.09 2.03 6.85 -52.48 -0.36 1.67 16
9 C 0.09 2.17 5.73 -104.68 -0.60 1.57 16
10 C -0.17 -4.49 8.55 -38.11 -0.33 -4.82 16
11 C -0.04 -1.03 5.87 -104.97 -0.62 -1.65 16
12 C -0.13 -2.83 9.80 -39.37 -0.39 -3.22 16
13 C -0.12 -2.22 9.91 -39.99 -0.40 -2.62 16
14 C -0.18 -3.50 9.90 -39.95 -0.40 -3.90 16
15 C -0.05 -1.15 9.99 -39.44 -0.39 -1.54 16
16 C 0.03 0.75 6.75 -82.94 -0.56 0.19 16
17 N -0.43 -10.77 8.71 -4.86 -0.04 -10.81 16
18 C 0.12 2.85 5.52 -80.64 -0.45 2.40 16
19 C 0.09 1.89 4.79 -105.85 -0.51 1.38 16
20 C -0.12 -2.08 8.64 -41.10 -0.36 -2.44 16
21 C -0.23 -3.37 10.87 29.01 0.32 -3.05 16
22 S 0.20 2.79 22.91 -107.50 -2.46 0.33 16
23 C -0.26 -4.96 6.50 -36.33 -0.24 -5.20 16
24 C 0.54 10.42 8.25 33.97 0.28 10.70 16
25 O -0.47 -10.83 15.01 -19.37 -0.29 -11.12 16
26 O -0.52 -7.41 13.41 -41.14 -0.55 -7.96 16
27 H 0.29 6.08 8.29 -40.82 -0.34 5.75 16
28 H 0.13 3.41 6.22 -52.49 -0.33 3.08 16
29 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16
30 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16
31 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16
32 H 0.11 2.21 8.06 -52.49 -0.42 1.79 16
33 H 0.15 2.75 8.06 -52.49 -0.42 2.33 16
34 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16
35 H 0.41 3.99 8.98 45.56 0.41 4.40 16
LS Contribution 324.76 15.07 4.89 4.89
Total: -1.00 -30.12 324.76 -9.84 -39.95
By element:
Atomic # 1 Polarization: 13.14 SS G_CDS: -1.95 Total: 11.19 kcal
Atomic # 6 Polarization: -16.05 SS G_CDS: -5.01 Total: -21.07 kcal
Atomic # 7 Polarization: -28.68 SS G_CDS: 0.57 Total: -28.11 kcal
Atomic # 8 Polarization: -18.24 SS G_CDS: -0.84 Total: -19.08 kcal
Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal
Atomic # 16 Polarization: 2.79 SS G_CDS: -2.46 Total: 0.33 kcal
Total LS contribution 4.89 Total: 4.89 kcal
Total: -30.12 -9.84 -39.95 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001205547738.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.375 kcal
(2) G-P(sol) polarization free energy of solvation -30.115 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.740 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.576 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds