Wall clock time and date at job start Tue Mar 31 2020 15:07:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30741 * 1
3 3 Si 1.86799 * 120.00095 * 2 1
4 4 H 1.48495 * 109.47157 * 270.00548 * 3 2 1
5 5 H 1.48502 * 109.46820 * 29.99930 * 3 2 1
6 6 H 1.48494 * 109.47336 * 149.99876 * 3 2 1
7 7 C 1.40131 * 120.00046 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99969 * 197.53544 * 7 2 1
9 9 C 1.40763 * 120.00015 * 17.54218 * 7 2 1
10 10 C 1.40420 * 120.42313 * 24.40635 * 9 7 2
11 11 C 1.39977 * 117.97245 * 180.27713 * 10 9 7
12 12 C 1.40797 * 121.39121 * 179.69929 * 11 10 9
13 13 C 1.36123 * 119.46826 * 180.02562 * 12 11 10
14 14 C 1.39184 * 121.47978 * 359.96464 * 13 12 11
15 15 C 1.36230 * 121.75757 * 0.03997 * 14 13 12
16 16 C 1.40527 * 119.70358 * 359.97438 * 15 14 13
17 17 N 1.33573 * 120.97999 * 179.97438 * 16 15 14
18 18 C 1.31689 * 121.74422 * 180.02562 * 17 16 15
19 19 C 1.47651 * 119.45324 * 179.97438 * 18 17 16
20 20 C 1.38769 * 123.64589 * 237.33220 * 19 18 17
21 21 C 1.33320 * 115.07340 * 179.97438 * 20 19 18
22 22 S 1.70515 * 111.43609 * 359.75963 * 21 20 19
23 23 C 1.38260 * 123.64966 * 57.33010 * 19 18 17
24 24 C 1.46300 * 125.50627 * 359.96187 * 23 19 18
25 25 O 1.21640 * 120.00612 * 5.35123 * 24 23 19
26 26 O 1.34935 * 119.99966 * 185.35016 * 24 23 19
27 27 H 0.96991 * 120.00245 * 359.97438 * 1 2 3
28 28 H 1.08002 * 121.01064 * 0.02562 * 10 9 7
29 29 H 1.07997 * 120.26643 * 0.02562 * 12 11 10
30 30 H 1.08007 * 119.25969 * 179.97438 * 13 12 11
31 31 H 1.07994 * 119.11892 * 180.02562 * 14 13 12
32 32 H 1.07994 * 120.14511 * 179.97438 * 15 14 13
33 33 H 1.07999 * 122.46593 * 0.02562 * 20 19 18
34 34 H 1.07998 * 124.28091 * 179.97438 * 21 20 19
35 35 H 0.96695 * 113.99852 * 180.02562 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3074 0.0000 0.0000
3 14 2.2414 1.6177 0.0000
4 1 2.4888 2.0464 -1.4000
5 1 1.4388 2.6526 0.7000
6 1 3.5389 1.4402 0.7000
7 6 2.0081 -1.2136 0.0005
8 1 3.0505 -1.2352 0.2824
9 6 1.3534 -2.4044 -0.3664
10 6 0.2205 -2.3667 -1.1952
11 6 -0.3938 -3.5810 -1.5231
12 6 -1.5371 -3.6265 -2.3436
13 6 -2.1033 -4.8291 -2.6372
14 6 -1.5770 -6.0198 -2.1447
15 6 -0.4732 -6.0399 -1.3464
16 6 0.1606 -4.8333 -1.0041
17 7 1.2439 -4.8234 -0.2228
18 6 1.8494 -3.7017 0.1079
19 6 3.0434 -3.7495 0.9753
20 6 3.1417 -3.0781 2.1857
21 6 4.2976 -3.2410 2.8299
22 16 5.3550 -4.2610 1.9644
23 6 4.1843 -4.4680 0.6693
24 6 4.3825 -5.2759 -0.5342
25 8 3.5399 -5.2772 -1.4115
26 8 5.5000 -6.0197 -0.6710
27 1 -0.4850 0.8399 0.0004
28 1 -0.1674 -1.4291 -1.5651
29 1 -1.9615 -2.7146 -2.7368
30 1 -2.9805 -4.8600 -3.2665
31 1 -2.0566 -6.9525 -2.4021
32 1 -0.0872 -6.9789 -0.9784
33 1 2.3405 -2.4691 2.5776
34 1 4.5329 -2.7873 3.7813
35 1 5.5416 -6.5183 -1.4984
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001205547738.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:07:26
Heat of formation + Delta-G solvation = -30.333831 kcal
Electronic energy + Delta-G solvation = -24345.298362 eV
Core-core repulsion = 20784.546767 eV
Total energy + Delta-G solvation = -3560.751595 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 325.056 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-41.22642 -40.56165 -38.95707 -37.12772 -36.91558 -35.91551 -33.41294 -31.75943
-31.15483 -30.21269 -27.47744 -26.76522 -23.98765 -23.55355 -23.22305 -22.26612
-20.25928 -19.69766 -19.50305 -18.54696 -17.96530 -17.61055 -16.99493 -16.60014
-16.43879 -16.11671 -15.56700 -15.11133 -15.00359 -14.70649 -14.41415 -14.25601
-13.90903 -13.78999 -13.60307 -13.47878 -13.21866 -12.99854 -12.70029 -12.55499
-12.30953 -12.26672 -12.03125 -11.91046 -11.69379 -11.51665 -11.30252 -10.74282
-10.13270 -9.87539 -9.43969 -9.13553 -8.83336 -8.70644 -6.38699 -0.70028
-0.02568 0.35680 0.53516 0.96270 1.30860 1.33983 1.38672 1.50582
1.70208 1.94481 2.13101 2.17464 2.28399 2.92748 3.57508 3.71371
4.01208 4.18601 4.24335 4.25881 4.41243 4.56484 4.60665 4.63481
4.68647 4.84605 5.02157 5.08067 5.18007 5.23245 5.37390 5.44665
5.49137 5.56598 5.72446 5.76868 5.90014 5.96332 6.24911 6.46009
6.64203 6.72794 6.95477 7.48243 8.14139
Molecular weight = 325.06amu
Principal moments of inertia in cm(-1)
A = 0.008457 B = 0.007230 C = 0.004326
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3309.898152 B = 3871.679331 C = 6471.108943
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.796 5.796
2 C 0.037 3.963
3 Si 0.982 3.018
4 H -0.266 1.266
5 H -0.262 1.262
6 H -0.247 1.247
7 C -0.439 4.439
8 H 0.089 0.911
9 C 0.056 3.944
10 C -0.211 4.211
11 C -0.066 4.066
12 C -0.154 4.154
13 C -0.102 4.102
14 C -0.167 4.167
15 C -0.074 4.074
16 C -0.005 4.005
17 N -0.444 5.444
18 C 0.107 3.893
19 C 0.056 3.944
20 C -0.147 4.147
21 C -0.209 4.209
22 S 0.302 5.698
23 C -0.299 4.299
24 C 0.547 3.453
25 O -0.524 6.524
26 O -0.496 6.496
27 H 0.296 0.704
28 H 0.119 0.881
29 H 0.120 0.880
30 H 0.147 0.853
31 H 0.148 0.852
32 H 0.121 0.879
33 H 0.139 0.861
34 H 0.212 0.788
35 H 0.427 0.573
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.000 -3.526 3.690 9.489
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.420 5.420
2 C -0.182 4.182
3 Si 0.801 3.199
4 H -0.191 1.191
5 H -0.187 1.187
6 H -0.170 1.170
7 C -0.467 4.467
8 H 0.107 0.893
9 C 0.051 3.949
10 C -0.236 4.236
11 C -0.068 4.068
12 C -0.173 4.173
13 C -0.119 4.119
14 C -0.187 4.187
15 C -0.092 4.092
16 C -0.127 4.127
17 N -0.150 5.150
18 C -0.050 4.050
19 C 0.039 3.961
20 C -0.178 4.178
21 C -0.347 4.347
22 S 0.571 5.429
23 C -0.417 4.417
24 C 0.390 3.610
25 O -0.414 6.414
26 O -0.309 6.309
27 H 0.107 0.893
28 H 0.137 0.863
29 H 0.138 0.862
30 H 0.165 0.835
31 H 0.166 0.834
32 H 0.139 0.861
33 H 0.157 0.843
34 H 0.229 0.771
35 H 0.287 0.713
Dipole moment (debyes) X Y Z Total
from point charges 9.276 -4.585 4.396 11.242
hybrid contribution -1.930 1.840 -1.309 2.971
sum 7.346 -2.744 3.088 8.428
Atomic orbital electron populations
1.69823 1.09331 1.31509 1.31295 1.26907 0.95451 1.04693 0.91138
0.85185 0.79636 0.75361 0.79705 1.19080 1.18660 1.17011 1.19759
0.98268 0.91103 1.37548 0.89251 1.19484 0.92719 0.92274 0.90435
1.21422 1.01788 0.95692 1.04713 1.20034 0.95996 0.93827 0.96952
1.21058 0.96304 0.98921 1.00988 1.20952 0.99959 0.91686 0.99347
1.20744 0.97658 0.99046 1.01219 1.20747 0.95549 0.95271 0.97671
1.19792 0.96190 0.93380 1.03375 1.67366 1.06942 1.29527 1.11214
1.20832 0.96218 0.88936 0.99048 1.18104 0.90925 0.93367 0.93674
1.19905 1.00470 1.03232 0.94194 1.25623 0.97677 1.04629 1.06737
1.82336 1.13495 1.40567 1.06519 1.23772 1.02396 1.12671 1.02910
1.19461 0.79178 0.77200 0.85127 1.91031 1.44459 1.63482 1.42435
1.84928 1.40298 1.58101 1.47574 0.89280 0.86337 0.86189 0.83492
0.83445 0.86115 0.84285 0.77086 0.71310
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -39.19 10.95 21.86 0.24 -38.95 16
2 C 0.04 1.74 5.16 85.31 0.44 2.18 16
3 Si 0.98 35.05 29.60 68.60 2.03 37.08 16
4 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16
5 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16
6 H -0.25 -8.34 7.11 99.48 0.71 -7.63 16
7 C -0.44 -22.24 7.97 23.35 0.19 -22.06 16
8 H 0.09 4.33 6.85 -2.91 -0.02 4.31 16
9 C 0.06 3.09 5.73 -19.90 -0.11 2.97 16
10 C -0.21 -11.73 8.55 23.22 0.20 -11.53 16
11 C -0.07 -3.47 5.87 -20.09 -0.12 -3.58 16
12 C -0.15 -6.79 9.80 22.40 0.22 -6.57 16
13 C -0.10 -3.74 9.91 22.00 0.22 -3.52 16
14 C -0.17 -6.12 9.90 22.03 0.22 -5.90 16
15 C -0.07 -3.25 9.99 22.36 0.22 -3.02 16
16 C 0.00 -0.25 6.75 41.58 0.28 0.03 16
17 N -0.44 -23.90 8.71 -169.29 -1.47 -25.37 16
18 C 0.11 5.65 5.52 43.88 0.24 5.89 16
19 C 0.06 2.46 4.79 -20.66 -0.10 2.36 16
20 C -0.15 -5.32 8.64 21.28 0.18 -5.14 16
21 C -0.21 -5.39 10.87 66.71 0.72 -4.66 16
22 S 0.30 7.61 22.91 -56.49 -1.29 6.32 16
23 C -0.30 -11.33 6.50 24.37 0.16 -11.18 16
24 C 0.55 21.16 8.25 69.92 0.58 21.74 16
25 O -0.52 -25.12 15.01 19.38 0.29 -24.83 16
26 O -0.50 -13.54 13.41 -58.50 -0.78 -14.33 16
27 H 0.30 13.01 8.29 -92.72 -0.77 12.24 16
28 H 0.12 6.67 6.22 -2.91 -0.02 6.66 16
29 H 0.12 4.89 8.06 -2.91 -0.02 4.86 16
30 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16
31 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16
32 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16
33 H 0.14 5.27 8.06 -2.91 -0.02 5.24 16
34 H 0.21 3.48 8.06 -2.91 -0.02 3.46 16
35 H 0.43 7.82 8.98 -74.06 -0.67 7.15 16
Total: -1.00 -72.71 324.76 3.06 -69.66
By element:
Atomic # 1 Polarization: 31.91 SS G_CDS: 0.51 Total: 32.42 kcal
Atomic # 6 Polarization: -45.54 SS G_CDS: 3.54 Total: -42.00 kcal
Atomic # 7 Polarization: -63.08 SS G_CDS: -1.23 Total: -64.32 kcal
Atomic # 8 Polarization: -38.66 SS G_CDS: -0.49 Total: -39.16 kcal
Atomic # 14 Polarization: 35.05 SS G_CDS: 2.03 Total: 37.08 kcal
Atomic # 16 Polarization: 7.61 SS G_CDS: -1.29 Total: 6.32 kcal
Total: -72.71 3.06 -69.66 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001205547738.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.322 kcal
(2) G-P(sol) polarization free energy of solvation -72.711 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.389 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.656 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.334 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds