Wall clock time and date at job start Tue Mar 31 2020 13:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38282 * 119.96262 * 2 1 4 4 C 1.38245 * 120.11671 * 179.97438 * 3 2 1 5 5 C 1.38241 * 120.04592 * 0.04942 * 4 3 2 6 6 Br 1.89096 * 120.03555 * 179.97438 * 5 4 3 7 7 C 1.38789 * 119.92526 * 359.96862 * 5 4 3 8 8 O 1.35914 * 120.05637 * 180.02562 * 7 5 4 9 9 C 1.42903 * 117.00131 * 183.08048 * 8 7 5 10 10 H 1.09011 * 110.63908 * 33.41599 * 9 8 7 11 11 C 1.55158 * 110.72112 * 156.54869 * 9 8 7 12 12 C 1.54910 * 101.57830 * 154.04662 * 11 9 8 13 13 N 1.47430 * 104.83582 * 322.99223 * 12 11 9 14 14 C 1.36927 * 125.64947 * 204.09833 * 13 12 11 15 15 H 1.08000 * 120.00386 * 163.74582 * 14 13 12 16 16 C 1.38811 * 120.00026 * 343.73509 * 14 13 12 17 17 N 1.31619 * 120.00490 * 331.64835 * 16 14 13 18 18 Si 1.86801 * 119.99814 * 151.91918 * 16 14 13 19 19 H 1.48494 * 109.47503 * 269.72751 * 18 16 14 20 20 H 1.48504 * 109.46959 * 29.72971 * 18 16 14 21 21 H 1.48500 * 109.47157 * 149.72783 * 18 16 14 22 22 C 1.47024 * 108.69915 * 24.35712 * 13 12 11 23 23 C 1.38142 * 119.96454 * 180.27691 * 2 1 3 24 24 H 1.09001 * 109.47186 * 89.99630 * 1 2 3 25 25 H 1.08996 * 109.47071 * 209.99823 * 1 2 3 26 26 H 1.09001 * 109.46948 * 329.99916 * 1 2 3 27 27 H 1.08000 * 119.94350 * 359.97438 * 3 2 1 28 28 H 1.07996 * 119.97600 * 180.02562 * 4 3 2 29 29 H 1.09004 * 111.00330 * 35.97334 * 11 9 8 30 30 H 1.08997 * 111.01021 * 272.12020 * 11 9 8 31 31 H 1.09004 * 110.36379 * 204.15735 * 12 11 9 32 32 H 1.08994 * 110.46371 * 81.88120 * 12 11 9 33 33 H 0.96999 * 119.99136 * 354.99508 * 17 16 14 34 34 H 1.08994 * 109.87978 * 118.12795 * 22 13 12 35 35 H 1.09003 * 109.88045 * 239.29579 * 22 13 12 36 36 H 1.07999 * 120.02387 * 0.04568 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1980 0.0000 4 6 3.5801 1.2017 0.0005 5 6 4.2755 0.0069 0.0000 6 35 6.1664 0.0124 0.0000 7 6 3.5842 -1.1965 -0.0003 8 8 4.2652 -2.3728 -0.0003 9 6 3.4899 -3.5713 -0.0691 10 1 2.5936 -3.4151 -0.6695 11 6 4.3358 -4.7402 -0.6395 12 6 3.6257 -5.9694 -0.0194 13 7 3.2319 -5.5352 1.3333 14 6 3.0065 -6.3606 2.4024 15 1 2.9807 -5.9540 3.4026 16 6 2.8109 -7.7199 2.2006 17 7 2.2945 -8.1497 1.0688 18 14 3.2734 -8.9388 3.5385 19 1 4.6811 -9.3718 3.3485 20 1 3.1293 -8.2928 4.8679 21 1 2.3775 -10.1206 3.4627 22 6 3.1153 -4.0696 1.3427 23 6 2.1970 -1.1968 -0.0058 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6561 2.1324 -0.0004 28 1 4.1172 2.1387 0.0010 29 1 5.3702 -4.6751 -0.3019 30 1 4.2827 -4.7663 -1.7279 31 1 4.3115 -6.8147 0.0381 32 1 2.7449 -6.2356 -0.6038 33 1 1.9837 -7.5140 0.4053 34 1 2.0915 -3.7808 1.5803 35 1 3.8017 -3.6478 2.0769 36 1 1.6568 -2.1319 -0.0110 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228052788.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:00 Heat of formation + Delta-G solvation = 11.474677 kcal Electronic energy + Delta-G solvation = -19566.737782 eV Core-core repulsion = 16484.018828 eV Total energy + Delta-G solvation = -3082.718954 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.38672 -38.27359 -36.45821 -33.42461 -32.46066 -30.47683 -30.11986 -29.19212 -27.80045 -26.35672 -24.45084 -22.91938 -21.56375 -20.30829 -20.27370 -17.85558 -17.62585 -16.17346 -15.98247 -15.42360 -14.58635 -14.50302 -14.11558 -13.77081 -13.53519 -13.28546 -13.20024 -13.02723 -12.46090 -12.33110 -12.23542 -11.75987 -11.59102 -11.14828 -10.90302 -10.70274 -10.65886 -10.55568 -10.37203 -10.14618 -10.12412 -10.03992 -9.57647 -8.83113 -8.46623 -8.15388 -7.01673 -6.16012 -3.19832 0.97708 1.27125 1.70778 3.20110 3.47425 3.50523 3.52724 3.69013 4.53431 4.60136 4.62545 4.86904 5.01947 5.03352 5.08682 5.29586 5.30056 5.35792 5.40663 5.42311 5.55021 5.61529 5.81866 5.92505 5.98025 6.03356 6.13241 6.24440 6.37141 6.39480 6.49903 6.65553 6.85767 6.92555 7.45658 7.73474 8.43162 8.95241 9.75560 10.28205 11.17514 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.016975 B = 0.003843 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.123119 B = 7284.303823 C = 8329.045291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.030 4.030 3 C -0.163 4.163 4 C -0.051 4.051 5 C -0.138 4.138 6 Br -0.044 7.044 7 C 0.173 3.827 8 O -0.288 6.288 9 C 0.067 3.933 10 H 0.080 0.920 11 C -0.126 4.126 12 C 0.145 3.855 13 N -0.598 5.598 14 C -0.339 4.339 15 H 0.067 0.933 16 C -0.023 4.023 17 N -0.916 5.916 18 Si 1.069 2.931 19 H -0.292 1.292 20 H -0.292 1.292 21 H -0.289 1.289 22 C 0.120 3.880 23 C -0.206 4.206 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.129 0.871 28 H 0.135 0.865 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.030 0.970 33 H 0.268 0.732 34 H 0.027 0.973 35 H 0.038 0.962 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.868 20.406 -5.483 21.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.030 4.030 3 C -0.182 4.182 4 C -0.071 4.071 5 C -0.218 4.218 6 Br 0.041 6.959 7 C 0.124 3.876 8 O -0.200 6.200 9 C 0.011 3.989 10 H 0.098 0.902 11 C -0.165 4.165 12 C 0.019 3.981 13 N -0.327 5.327 14 C -0.466 4.466 15 H 0.084 0.916 16 C -0.225 4.225 17 N -0.557 5.557 18 Si 0.898 3.102 19 H -0.220 1.220 20 H -0.218 1.218 21 H -0.216 1.216 22 C -0.006 4.006 23 C -0.226 4.226 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.147 0.853 28 H 0.153 0.847 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.859 18.678 -4.996 19.545 hybrid contribution -0.769 1.639 -0.317 1.838 sum 2.090 20.317 -5.313 21.104 Atomic orbital electron populations 1.20872 0.90622 1.03347 1.02741 1.19844 0.96348 0.92346 0.94484 1.20876 0.93345 0.97778 1.06238 1.20887 0.94141 0.95868 0.96175 1.21005 0.90889 0.93467 1.16453 1.96664 1.02128 1.99196 1.97904 1.18685 0.90362 0.86009 0.92581 1.86265 1.35457 1.11834 1.86426 1.23698 0.94550 0.81948 0.98702 0.90222 1.22963 1.00249 0.93700 0.99544 1.21574 0.96319 0.93977 0.86227 1.44433 1.80299 0.99725 1.08228 1.19781 1.50036 0.90975 0.85806 0.91562 1.25779 0.97980 0.96213 1.02521 1.70780 1.36721 1.38076 1.10118 0.83457 0.76595 0.75719 0.74381 1.21951 1.21821 1.21569 1.21717 0.98149 0.87393 0.93326 1.21271 0.92453 0.99617 1.09217 0.90632 0.90965 0.91107 0.85290 0.84703 0.90161 0.90942 0.92205 0.95210 0.92028 0.95491 0.94430 0.84257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 10.01 36.01 0.36 -0.69 16 2 C -0.03 -0.34 5.88 -104.64 -0.62 -0.96 16 3 C -0.16 -1.70 9.70 -39.56 -0.38 -2.09 16 4 C -0.05 -0.58 9.78 -39.58 -0.39 -0.96 16 5 C -0.14 -1.93 6.24 -39.38 -0.25 -2.17 16 6 Br -0.04 -0.59 33.16 -68.01 -2.26 -2.85 16 7 C 0.17 2.66 6.67 -39.20 -0.26 2.40 16 8 O -0.29 -4.98 9.22 -19.47 -0.18 -5.16 16 9 C 0.07 1.20 2.74 -24.89 -0.07 1.13 16 10 H 0.08 1.30 6.15 -51.92 -0.32 0.98 16 11 C -0.13 -2.32 6.81 -24.58 -0.17 -2.48 16 12 C 0.14 3.32 5.29 -2.53 -0.01 3.30 16 13 N -0.60 -15.30 3.30 -170.07 -0.56 -15.86 16 14 C -0.34 -9.63 10.02 -15.06 -0.15 -9.78 16 15 H 0.07 1.90 7.97 -52.49 -0.42 1.48 16 16 C -0.02 -0.66 5.08 -17.43 -0.09 -0.75 16 17 N -0.92 -27.41 12.95 55.49 0.72 -26.69 16 18 Si 1.07 25.44 30.00 -169.99 -5.10 20.34 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 C 0.12 2.58 6.87 -3.06 -0.02 2.56 16 23 C -0.21 -2.87 8.60 -39.44 -0.34 -3.21 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 26 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 27 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 28 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.49 7.93 -51.93 -0.41 1.08 16 32 H 0.03 0.71 6.80 -51.93 -0.35 0.36 16 33 H 0.27 7.99 6.00 -40.82 -0.25 7.74 16 34 H 0.03 0.58 7.94 -51.93 -0.41 0.17 16 35 H 0.04 0.85 8.06 -51.93 -0.42 0.43 16 36 H 0.14 1.96 5.71 -52.49 -0.30 1.66 16 LS Contribution 316.88 15.07 4.78 4.78 Total: -1.00 -31.12 316.88 -9.61 -40.73 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -4.63 Total: -1.60 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -2.38 Total: -13.69 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.16 Total: -42.55 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.18 Total: -5.16 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.10 Total: 20.34 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.26 Total: -2.85 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.12 -9.61 -40.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228052788.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.206 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds