Wall clock time and date at job start Tue Mar 31 2020 14:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 116.99894 * 2 1 4 4 C 1.38742 * 120.04830 * 0.02562 * 3 2 1 5 5 C 1.38215 * 119.93068 * 179.97438 * 4 3 2 6 6 Br 1.89100 * 119.98011 * 179.97438 * 5 4 3 7 7 C 1.38376 * 120.03577 * 0.02562 * 5 4 3 8 8 C 1.38223 * 120.10330 * 0.02562 * 7 5 4 9 9 C 1.50706 * 119.96607 * 179.97438 * 8 7 5 10 10 N 1.46897 * 109.46920 * 90.00625 * 9 8 7 11 11 C 1.47483 * 110.99712 * 265.96947 * 10 9 8 12 12 C 1.53512 * 87.93002 * 221.29804 * 11 10 9 13 13 C 1.50707 * 114.34375 * 139.68544 * 12 11 10 14 14 H 1.08004 * 119.99829 * 266.07656 * 13 12 11 15 15 C 1.37875 * 120.00065 * 86.07248 * 13 12 11 16 16 N 1.31515 * 120.00043 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00046 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47138 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47284 * 120.00284 * 17 15 13 20 20 H 1.48509 * 109.47111 * 240.00399 * 17 15 13 21 21 C 1.47484 * 110.99773 * 170.00090 * 10 9 8 22 22 C 1.38169 * 120.06782 * 0.02562 * 8 7 5 23 23 H 1.09003 * 109.47167 * 299.99709 * 1 2 3 24 24 H 1.09003 * 109.47522 * 59.99843 * 1 2 3 25 25 H 1.09002 * 109.47118 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.03157 * 0.25048 * 4 3 2 27 27 H 1.08000 * 119.94613 * 180.02562 * 7 5 4 28 28 H 1.08999 * 109.46803 * 210.00342 * 9 8 7 29 29 H 1.09001 * 109.47296 * 330.00311 * 9 8 7 30 30 H 1.09001 * 113.47465 * 336.06141 * 11 10 9 31 31 H 1.08997 * 113.47632 * 106.53121 * 11 10 9 32 32 H 1.08997 * 114.17201 * 272.37908 * 12 11 10 33 33 H 0.96997 * 120.00419 * 179.97438 * 16 15 13 34 34 H 1.09002 * 113.47166 * 253.46593 * 21 10 9 35 35 H 1.09000 * 113.47771 * 23.93056 * 21 10 9 36 36 H 1.07998 * 120.02214 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3751 0.0005 5 6 1.9212 3.6053 0.0011 6 35 0.8940 5.1930 0.0011 7 6 3.3032 3.6758 0.0005 8 6 4.0565 2.5169 -0.0011 9 6 5.5614 2.5972 -0.0022 10 7 6.0515 2.6220 1.3824 11 6 6.2456 4.0073 1.8495 12 6 7.5463 3.5406 2.5180 13 6 8.6919 4.5119 2.3938 14 1 9.4017 4.4093 1.5863 15 6 8.8338 5.5315 3.3111 16 7 7.9697 5.6561 4.2947 17 14 10.2533 6.7358 3.1567 18 1 11.0777 6.3803 1.9738 19 1 9.7195 8.1118 2.9931 20 1 11.0917 6.6724 4.3808 21 6 7.5168 2.4608 1.4273 22 6 3.4311 1.2848 -0.0027 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2127 2.3201 0.0050 27 1 3.7940 4.6379 0.0014 28 1 5.9712 1.7283 -0.5172 29 1 5.8764 3.5058 -0.5155 30 1 6.4048 4.7201 1.0404 31 1 5.4866 4.3367 2.5591 32 1 7.4153 3.1567 3.5297 33 1 8.0697 6.3731 4.9402 34 1 7.8350 1.4794 1.7791 35 1 8.0151 2.7608 0.5055 36 1 4.0204 0.3797 -0.0044 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233213533.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:23 Heat of formation + Delta-G solvation = 24.510164 kcal Electronic energy + Delta-G solvation = -19042.803435 eV Core-core repulsion = 15960.649742 eV Total energy + Delta-G solvation = -3082.153693 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.31531 -39.01865 -37.48774 -33.26447 -32.39967 -31.16339 -29.49748 -28.57029 -27.34090 -25.58538 -24.78894 -22.85759 -22.32177 -20.71545 -18.64233 -17.83086 -16.63809 -16.46469 -16.04821 -15.90946 -14.92603 -14.64004 -14.36758 -14.10074 -13.78918 -13.51309 -13.03904 -12.94158 -12.24471 -11.97837 -11.81072 -11.67823 -11.66416 -11.29309 -11.01626 -10.90983 -10.61537 -10.48152 -10.35913 -10.26627 -9.78012 -9.32609 -8.96901 -8.68142 -8.44357 -8.27232 -8.03696 -6.06320 -4.11196 1.07654 1.32489 1.55190 3.09649 3.27352 3.35910 3.39025 3.57653 4.39488 4.63548 4.78103 4.93226 4.93409 5.08806 5.13451 5.16228 5.24615 5.27515 5.38360 5.48882 5.77870 5.85415 6.06818 6.09298 6.14621 6.31319 6.41970 6.54005 6.60634 6.65533 6.69823 7.13578 7.14195 7.22742 7.71496 7.88744 8.02973 8.35591 8.92434 9.54145 11.03193 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.003536 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.875149 B = 7916.196628 C = 9357.276446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.129 3.871 4 C -0.190 4.190 5 C -0.050 4.050 6 Br -0.054 7.054 7 C -0.115 4.115 8 C -0.013 4.013 9 C 0.054 3.946 10 N -0.478 5.478 11 C 0.005 3.995 12 C 0.041 3.959 13 C -0.517 4.517 14 H 0.058 0.942 15 C 0.067 3.933 16 N -0.885 5.885 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.005 4.005 22 C -0.119 4.119 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.094 -6.204 -10.886 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.084 3.916 4 C -0.211 4.211 5 C -0.129 4.129 6 Br 0.031 6.969 7 C -0.136 4.136 8 C -0.015 4.015 9 C -0.075 4.075 10 N -0.200 5.200 11 C -0.124 4.124 12 C 0.022 3.978 13 C -0.555 4.555 14 H 0.077 0.923 15 C -0.136 4.136 16 N -0.522 5.522 17 Si 0.718 3.282 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.134 4.134 22 C -0.139 4.139 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.118 0.882 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.903 -6.159 -10.397 21.599 hybrid contribution 0.981 1.118 -0.546 1.584 sum -16.922 -5.041 -10.943 20.773 Atomic orbital electron populations 1.23068 0.78476 1.03935 1.01425 1.86092 1.21306 1.26462 1.88846 1.18839 0.92140 0.83745 0.96924 1.21017 1.00095 0.90805 1.09148 1.21411 0.94252 0.91223 1.06050 1.96694 1.70739 1.31750 1.97672 1.20980 0.91280 0.99485 1.01807 1.19625 0.95973 0.91322 0.94545 1.21673 0.89818 1.01813 0.94152 1.68944 1.14344 1.21591 1.15146 1.24145 1.01161 0.88014 0.99079 1.20094 0.92229 0.91491 0.93939 1.21064 1.10809 1.11798 1.11835 0.92347 1.25019 0.95976 0.97697 0.94900 1.69976 1.35623 1.32060 1.14535 0.86570 0.82495 0.81053 0.78090 1.19713 1.20980 1.20911 1.24037 0.87579 1.00945 1.00812 1.20407 0.90941 0.98647 1.03896 0.92555 0.92675 0.88183 0.84857 0.84877 0.90482 0.92650 0.92750 0.91758 0.91768 0.92891 0.91816 0.92643 0.84615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.77 10.50 -19.43 -0.20 -3.97 16 3 C 0.13 1.73 6.69 -39.22 -0.26 1.47 16 4 C -0.19 -2.40 8.78 -39.40 -0.35 -2.75 16 5 C -0.05 -0.69 6.22 -39.54 -0.25 -0.94 16 6 Br -0.05 -0.67 33.70 -68.01 -2.29 -2.96 16 7 C -0.12 -1.73 9.44 -39.54 -0.37 -2.11 16 8 C -0.01 -0.20 5.46 -104.65 -0.57 -0.77 16 9 C 0.05 0.87 4.94 -4.97 -0.02 0.85 16 10 N -0.48 -9.41 6.32 -246.07 -1.55 -10.96 16 11 C 0.00 0.11 7.28 -7.54 -0.05 0.05 16 12 C 0.04 1.03 3.76 -91.24 -0.34 0.68 16 13 C -0.52 -13.85 8.83 -34.44 -0.30 -14.16 16 14 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 15 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 16 N -0.88 -25.37 13.26 55.43 0.74 -24.64 16 17 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.01 -0.11 7.25 -7.54 -0.05 -0.16 16 22 C -0.12 -1.71 9.64 -39.43 -0.38 -2.09 16 23 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 24 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 25 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.13 1.38 6.30 -52.49 -0.33 1.05 16 27 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 28 H 0.08 1.11 8.02 -51.93 -0.42 0.70 16 29 H 0.06 0.89 7.24 -51.93 -0.38 0.51 16 30 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 31 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.06 1.75 8.11 -51.93 -0.42 1.33 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.09 7.87 -51.93 -0.41 0.68 16 36 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 325.10 15.07 4.90 4.90 Total: -1.00 -28.77 325.10 -10.29 -39.06 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -4.79 Total: -0.27 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -2.07 Total: -16.99 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: -0.82 Total: -35.60 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -0.20 Total: -3.97 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 35 Polarization: -0.67 SS G_CDS: -2.29 Total: -2.96 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.77 -10.29 -39.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233213533.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.574 kcal (2) G-P(sol) polarization free energy of solvation -28.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds