Wall clock time and date at job start Tue Mar 31 2020 14:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 116.99894 * 2 1 4 4 C 1.38742 * 120.04830 * 0.02562 * 3 2 1 5 5 C 1.38215 * 119.93068 * 179.97438 * 4 3 2 6 6 Br 1.89100 * 119.98011 * 179.97438 * 5 4 3 7 7 C 1.38376 * 120.03577 * 0.02562 * 5 4 3 8 8 C 1.38223 * 120.10330 * 0.02562 * 7 5 4 9 9 C 1.50706 * 119.96607 * 179.97438 * 8 7 5 10 10 N 1.46897 * 109.46920 * 90.00625 * 9 8 7 11 11 C 1.47483 * 110.99712 * 265.96947 * 10 9 8 12 12 C 1.53512 * 87.93002 * 221.29804 * 11 10 9 13 13 C 1.50707 * 114.34375 * 139.68544 * 12 11 10 14 14 H 1.08004 * 119.99829 * 266.07656 * 13 12 11 15 15 C 1.37875 * 120.00065 * 86.07248 * 13 12 11 16 16 N 1.31515 * 120.00043 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00046 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47138 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47284 * 120.00284 * 17 15 13 20 20 H 1.48509 * 109.47111 * 240.00399 * 17 15 13 21 21 C 1.47484 * 110.99773 * 170.00090 * 10 9 8 22 22 C 1.38169 * 120.06782 * 0.02562 * 8 7 5 23 23 H 1.09003 * 109.47167 * 299.99709 * 1 2 3 24 24 H 1.09003 * 109.47522 * 59.99843 * 1 2 3 25 25 H 1.09002 * 109.47118 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.03157 * 0.25048 * 4 3 2 27 27 H 1.08000 * 119.94613 * 180.02562 * 7 5 4 28 28 H 1.08999 * 109.46803 * 210.00342 * 9 8 7 29 29 H 1.09001 * 109.47296 * 330.00311 * 9 8 7 30 30 H 1.09001 * 113.47465 * 336.06141 * 11 10 9 31 31 H 1.08997 * 113.47632 * 106.53121 * 11 10 9 32 32 H 1.08997 * 114.17201 * 272.37908 * 12 11 10 33 33 H 0.96997 * 120.00419 * 179.97438 * 16 15 13 34 34 H 1.09002 * 113.47166 * 253.46593 * 21 10 9 35 35 H 1.09000 * 113.47771 * 23.93056 * 21 10 9 36 36 H 1.07998 * 120.02214 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3751 0.0005 5 6 1.9212 3.6053 0.0011 6 35 0.8940 5.1930 0.0011 7 6 3.3032 3.6758 0.0005 8 6 4.0565 2.5169 -0.0011 9 6 5.5614 2.5972 -0.0022 10 7 6.0515 2.6220 1.3824 11 6 6.2456 4.0073 1.8495 12 6 7.5463 3.5406 2.5180 13 6 8.6919 4.5119 2.3938 14 1 9.4017 4.4093 1.5863 15 6 8.8338 5.5315 3.3111 16 7 7.9697 5.6561 4.2947 17 14 10.2533 6.7358 3.1567 18 1 11.0777 6.3803 1.9738 19 1 9.7195 8.1118 2.9931 20 1 11.0917 6.6724 4.3808 21 6 7.5168 2.4608 1.4273 22 6 3.4311 1.2848 -0.0027 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2127 2.3201 0.0050 27 1 3.7940 4.6379 0.0014 28 1 5.9712 1.7283 -0.5172 29 1 5.8764 3.5058 -0.5155 30 1 6.4048 4.7201 1.0404 31 1 5.4866 4.3367 2.5591 32 1 7.4153 3.1567 3.5297 33 1 8.0697 6.3731 4.9402 34 1 7.8350 1.4794 1.7791 35 1 8.0151 2.7608 0.5055 36 1 4.0204 0.3797 -0.0044 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233213533.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:22 Heat of formation + Delta-G solvation = 6.970773 kcal Electronic energy + Delta-G solvation = -19043.564000 eV Core-core repulsion = 15960.649742 eV Total energy + Delta-G solvation = -3082.914258 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.38560 -40.54084 -38.55001 -34.91441 -33.91144 -32.32949 -30.50946 -30.06041 -28.21130 -27.22861 -26.52186 -24.44480 -23.36978 -21.90691 -20.46232 -18.94905 -18.43548 -17.49503 -17.11206 -16.79218 -16.65583 -16.30560 -15.77205 -15.62171 -14.85843 -14.73080 -14.25100 -14.13626 -13.79004 -13.43684 -13.18442 -12.97381 -12.90961 -12.74028 -12.49388 -12.38846 -12.14294 -11.87418 -11.62685 -11.51205 -11.34155 -11.09564 -10.85592 -10.49891 -9.84612 -9.66523 -9.29031 -8.13918 -6.25328 0.00162 0.24385 0.50569 1.42580 1.44678 1.56007 2.25946 2.42688 2.48993 3.15601 3.39868 3.66004 3.88350 3.98091 4.02629 4.21009 4.29390 4.31379 4.38753 4.42460 4.51399 4.56367 4.69905 4.74137 4.78039 4.88287 4.98408 5.01744 5.09974 5.25493 5.33260 5.51420 5.57969 5.64394 5.86422 6.30045 6.31646 6.37351 6.84925 7.43528 8.95998 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.003536 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.875149 B = 7916.196628 C = 9357.276446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.131 3.869 4 C -0.183 4.183 5 C -0.058 4.058 6 Br -0.043 7.043 7 C -0.131 4.131 8 C -0.026 4.026 9 C 0.056 3.944 10 N -0.477 5.477 11 C 0.020 3.980 12 C 0.019 3.981 13 C -0.528 4.528 14 H 0.062 0.938 15 C 0.014 3.986 16 N -0.922 5.922 17 Si 0.957 3.043 18 H -0.262 1.262 19 H -0.282 1.282 20 H -0.281 1.281 21 C 0.011 3.989 22 C -0.128 4.128 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.124 0.876 26 H 0.158 0.842 27 H 0.124 0.876 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.040 0.960 32 H 0.028 0.972 33 H 0.262 0.738 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.776 -6.882 -12.288 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C 0.084 3.916 4 C -0.204 4.204 5 C -0.138 4.138 6 Br 0.043 6.957 7 C -0.152 4.152 8 C -0.028 4.028 9 C -0.072 4.072 10 N -0.199 5.199 11 C -0.109 4.109 12 C 0.000 4.000 13 C -0.566 4.566 14 H 0.080 0.920 15 C -0.185 4.185 16 N -0.561 5.561 17 Si 0.782 3.218 18 H -0.186 1.186 19 H -0.208 1.208 20 H -0.207 1.207 21 C -0.117 4.117 22 C -0.147 4.147 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.142 0.858 26 H 0.175 0.825 27 H 0.142 0.858 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.591 -6.853 -11.815 23.069 hybrid contribution 1.059 1.245 -0.125 1.639 sum -17.532 -5.609 -11.941 21.941 Atomic orbital electron populations 1.23418 0.76201 1.05965 1.02350 1.86088 1.23648 1.25690 1.88483 1.18895 0.92026 0.84531 0.96136 1.21273 1.01320 0.90064 1.07749 1.21545 0.94033 0.92263 1.05930 1.96696 1.70119 1.31263 1.97639 1.20989 0.92093 0.99150 1.02939 1.19524 0.95356 0.91909 0.95969 1.21688 0.90720 1.02877 0.91901 1.68849 1.13924 1.19188 1.17983 1.23834 0.99106 0.89592 0.98410 1.20048 0.93048 0.93331 0.93552 1.21414 1.11333 1.12106 1.11776 0.91993 1.25833 0.98482 0.99565 0.94632 1.70107 1.37566 1.32943 1.15509 0.85523 0.79369 0.78593 0.78281 1.18611 1.20750 1.20706 1.23861 0.88228 1.00102 0.99542 1.20524 0.91798 0.98456 1.03954 0.91933 0.91355 0.85784 0.82467 0.85784 0.88255 0.92549 0.92773 0.94143 0.95380 0.92925 0.90496 0.91392 0.83902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -7.09 10.50 -92.43 -0.97 -8.06 16 3 C 0.13 3.26 6.69 22.51 0.15 3.41 16 4 C -0.18 -4.30 8.78 22.38 0.20 -4.10 16 5 C -0.06 -1.55 6.22 22.30 0.14 -1.41 16 6 Br -0.04 -1.01 33.70 -20.37 -0.69 -1.70 16 7 C -0.13 -3.92 9.44 22.30 0.21 -3.71 16 8 C -0.03 -0.78 5.46 -19.88 -0.11 -0.89 16 9 C 0.06 1.75 4.94 85.56 0.42 2.18 16 10 N -0.48 -18.63 6.32 -932.43 -5.89 -24.52 16 11 C 0.02 0.91 7.28 83.58 0.61 1.52 16 12 C 0.02 0.98 3.76 -11.19 -0.04 0.93 16 13 C -0.53 -28.55 8.83 25.60 0.23 -28.33 16 14 H 0.06 3.23 7.81 -2.91 -0.02 3.20 16 15 C 0.01 0.78 5.46 84.65 0.46 1.24 16 16 N -0.92 -54.24 13.26 21.45 0.28 -53.96 16 17 Si 0.96 42.99 29.54 68.60 2.03 45.01 16 18 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 C 0.01 0.45 7.25 83.58 0.61 1.05 16 22 C -0.13 -3.49 9.64 22.37 0.22 -3.28 16 23 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 24 H 0.07 0.70 7.67 -2.39 -0.02 0.68 16 25 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.16 2.82 6.30 -2.91 -0.02 2.80 16 27 H 0.12 3.83 8.06 -2.91 -0.02 3.81 16 28 H 0.10 2.66 8.02 -2.39 -0.02 2.64 16 29 H 0.06 1.76 7.24 -2.39 -0.02 1.74 16 30 H 0.05 2.45 7.38 -2.39 -0.02 2.43 16 31 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.03 1.60 8.11 -2.39 -0.02 1.58 16 33 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 34 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.07 2.56 7.87 -2.39 -0.02 2.54 16 36 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -62.02 325.10 0.04 -61.99 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 1.08 Total: 11.31 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 4.20 Total: -30.07 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: -5.60 Total: -78.48 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.97 Total: -8.06 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 35 Polarization: -1.01 SS G_CDS: -0.69 Total: -1.70 kcal Total: -62.02 0.04 -61.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233213533.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.957 kcal (2) G-P(sol) polarization free energy of solvation -62.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds