Wall clock time and date at job start Tue Mar 31 2020 13:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38157 * 120.02112 * 2 1 4 4 C 1.38328 * 120.04264 * 179.97438 * 3 2 1 5 5 Br 1.89097 * 119.95331 * 179.97438 * 4 3 2 6 6 C 1.38362 * 120.09494 * 0.02562 * 4 3 2 7 7 C 1.50696 * 119.98054 * 179.97438 * 6 4 3 8 8 N 1.46901 * 109.47378 * 285.00293 * 7 6 4 9 9 C 1.47477 * 111.00114 * 265.96969 * 8 7 6 10 10 C 1.53511 * 87.93078 * 221.29602 * 9 8 7 11 11 C 1.50705 * 114.34220 * 139.68800 * 10 9 8 12 12 H 1.07997 * 119.99538 * 266.07457 * 11 10 9 13 13 C 1.37875 * 120.00223 * 86.07123 * 11 10 9 14 14 N 1.31513 * 120.00239 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99974 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47112 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47199 * 120.00055 * 15 13 11 18 18 H 1.48493 * 109.47311 * 240.00356 * 15 13 11 19 19 C 1.47483 * 111.00137 * 169.99830 * 8 7 6 20 20 C 1.38128 * 120.04494 * 359.96172 * 6 4 3 21 21 C 1.38705 * 120.02330 * 179.97438 * 2 1 3 22 22 O 1.35924 * 120.04534 * 359.75174 * 21 2 1 23 23 H 1.08996 * 109.47204 * 270.01901 * 1 2 3 24 24 H 1.08997 * 109.47132 * 30.02328 * 1 2 3 25 25 H 1.09005 * 109.47238 * 150.01842 * 1 2 3 26 26 H 1.07992 * 119.98018 * 359.97438 * 3 2 1 27 27 H 1.09003 * 109.47035 * 45.00139 * 7 6 4 28 28 H 1.09007 * 109.47110 * 165.00136 * 7 6 4 29 29 H 1.08999 * 113.47646 * 336.06470 * 9 8 7 30 30 H 1.09006 * 113.47437 * 106.52670 * 9 8 7 31 31 H 1.09000 * 114.16829 * 272.37437 * 10 9 8 32 32 H 0.96997 * 120.00535 * 179.97438 * 14 13 11 33 33 H 1.08999 * 113.47457 * 253.47122 * 19 8 7 34 34 H 1.08995 * 113.47333 * 23.87549 * 19 8 7 35 35 H 1.07999 * 120.02448 * 180.02562 * 20 6 4 36 36 H 0.96696 * 114.00396 * 89.99847 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1962 0.0000 4 6 3.5815 1.1967 0.0005 5 35 4.5250 2.8355 -0.0002 6 6 4.2758 -0.0001 0.0005 7 6 5.7827 0.0035 0.0005 8 7 6.2716 0.3632 -1.3372 9 6 6.5419 -0.8421 -2.1429 10 6 7.8137 -0.1491 -2.6516 11 6 9.0117 -1.0562 -2.7669 12 1 9.7157 -1.1272 -1.9510 13 6 9.2088 -1.7954 -3.9139 14 7 8.3517 -1.7087 -4.9076 15 14 10.6940 -2.9192 -4.0570 16 1 11.4988 -2.8369 -2.8118 17 1 10.2387 -4.3180 -4.2600 18 1 11.5250 -2.4965 -5.2128 19 6 7.7256 0.6096 -1.3200 20 6 3.5885 -1.1983 0.0008 21 6 2.2010 -1.2009 0.0005 22 8 1.5228 -2.3789 0.0062 23 1 -0.3633 0.0003 1.0276 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3634 -0.8902 -0.5136 26 1 1.6583 2.1315 -0.0004 27 1 6.1443 0.7310 0.7272 28 1 6.1484 -0.9884 0.2665 29 1 6.7415 -1.7299 -1.5427 30 1 5.8013 -1.0179 -2.9232 31 1 7.6602 0.4750 -3.5319 32 1 8.4906 -2.2285 -5.7147 33 1 7.9882 1.6642 -1.4030 34 1 8.2409 0.1102 -0.4997 35 1 4.1307 -2.1323 0.0012 36 1 1.3232 -2.7221 -0.8755 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237294617.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:08 Heat of formation + Delta-G solvation = 14.211120 kcal Electronic energy + Delta-G solvation = -19327.549705 eV Core-core repulsion = 16244.949412 eV Total energy + Delta-G solvation = -3082.600293 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.15013 -38.83038 -36.85648 -33.71728 -32.50585 -31.55840 -29.80567 -28.68177 -26.96237 -24.91322 -24.67601 -22.68115 -22.32697 -20.70663 -18.60855 -17.95341 -16.62163 -16.37227 -15.78371 -15.19362 -14.84059 -14.43392 -14.21445 -13.87889 -13.65285 -13.48667 -12.90154 -12.52376 -12.38846 -12.08189 -11.90442 -11.72880 -11.48609 -11.19070 -11.01264 -10.67369 -10.56210 -10.40665 -10.30779 -9.90535 -9.71393 -9.30863 -8.95650 -8.73630 -8.46062 -8.28811 -7.98048 -6.06494 -4.10979 1.01600 1.22585 1.85059 3.26621 3.35184 3.38341 3.40079 4.10217 4.39189 4.62763 4.72146 4.97730 5.02552 5.21043 5.26509 5.39639 5.44656 5.54461 5.59122 5.75211 5.85553 5.99859 6.07636 6.09153 6.30318 6.33720 6.38826 6.49654 6.62886 6.70049 6.71963 7.13542 7.18377 7.52236 7.72656 7.90129 8.05982 8.36794 8.92778 9.54207 11.03043 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.004176 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.945152 B = 6703.792299 C = 8062.850530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.117 4.117 3 C -0.081 4.081 4 C -0.076 4.076 5 Br -0.040 7.040 6 C -0.022 4.022 7 C 0.048 3.952 8 N -0.468 5.468 9 C 0.005 3.995 10 C 0.042 3.958 11 C -0.515 4.515 12 H 0.058 0.942 13 C 0.067 3.933 14 N -0.886 5.886 15 Si 0.890 3.110 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.002 4.002 20 C -0.130 4.130 21 C 0.116 3.884 22 O -0.496 6.496 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.133 0.867 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.261 0.739 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.134 0.866 36 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.577 5.447 10.591 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.118 4.118 3 C -0.101 4.101 4 C -0.156 4.156 5 Br 0.046 6.954 6 C -0.024 4.024 7 C -0.080 4.080 8 N -0.190 5.190 9 C -0.124 4.124 10 C 0.023 3.977 11 C -0.554 4.554 12 H 0.076 0.924 13 C -0.136 4.136 14 N -0.523 5.523 15 Si 0.717 3.283 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.130 4.130 20 C -0.149 4.149 21 C 0.071 3.929 22 O -0.306 6.306 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.151 0.849 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.152 0.848 36 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -14.699 6.577 10.814 19.397 hybrid contribution 0.968 -1.868 -0.276 2.122 sum -13.730 4.709 10.538 17.937 Atomic orbital electron populations 1.20612 0.90304 1.02664 1.02455 1.20090 0.96729 0.92070 1.02959 1.20822 0.91898 0.97931 0.99479 1.21633 0.94105 0.92084 1.07758 1.96673 1.76327 1.24963 1.97432 1.19639 0.96376 0.90846 0.95571 1.21750 0.89740 1.00835 0.95694 1.68950 1.15641 1.26617 1.07772 1.24131 1.00529 0.91355 0.96413 1.20084 0.92406 0.93449 0.91775 1.21077 1.08436 1.24528 1.01312 0.92384 1.25010 0.96161 0.96814 0.95577 1.69978 1.35771 1.40878 1.05700 0.86579 0.82997 0.80551 0.78140 1.19719 1.21032 1.20903 1.23982 0.87587 1.00346 1.01107 1.21333 0.93264 0.98329 1.02018 1.18281 0.89621 0.84894 1.00123 1.84800 1.76320 1.35866 1.33624 0.91112 0.91546 0.91373 0.84930 0.90039 0.92922 0.92960 0.91989 0.91785 0.92947 0.91854 0.92839 0.84772 0.75330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 9.79 36.01 0.35 -0.57 16 2 C -0.12 -1.40 5.89 -104.48 -0.62 -2.02 16 3 C -0.08 -1.03 9.44 -39.58 -0.37 -1.41 16 4 C -0.08 -1.11 6.22 -39.50 -0.25 -1.36 16 5 Br -0.04 -0.57 31.91 -68.01 -2.17 -2.75 16 6 C -0.02 -0.34 5.47 -104.62 -0.57 -0.91 16 7 C 0.05 0.81 4.21 -4.98 -0.02 0.79 16 8 N -0.47 -9.22 6.06 -246.11 -1.49 -10.71 16 9 C 0.00 0.10 7.28 -7.55 -0.05 0.05 16 10 C 0.04 1.04 3.76 -91.24 -0.34 0.69 16 11 C -0.52 -13.85 8.83 -34.44 -0.30 -14.15 16 12 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 13 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 14 N -0.89 -25.35 13.26 55.43 0.74 -24.62 16 15 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 C 0.00 -0.03 7.25 -7.55 -0.05 -0.09 16 20 C -0.13 -1.88 9.61 -39.43 -0.38 -2.26 16 21 C 0.12 1.50 6.68 -39.22 -0.26 1.24 16 22 O -0.50 -5.51 12.55 -19.50 -0.24 -5.75 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 25 H 0.07 0.55 7.53 -51.93 -0.39 0.16 16 26 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 27 H 0.08 1.31 7.34 -51.93 -0.38 0.93 16 28 H 0.05 0.88 7.11 -51.93 -0.37 0.51 16 29 H 0.05 1.17 7.38 -51.93 -0.38 0.79 16 30 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.06 1.75 8.11 -51.93 -0.42 1.33 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.05 1.08 7.87 -51.93 -0.41 0.67 16 35 H 0.13 1.87 8.00 -52.49 -0.42 1.45 16 36 H 0.39 2.69 9.06 45.56 0.41 3.10 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -29.45 323.60 -10.30 -39.75 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -4.02 Total: 1.61 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -2.97 Total: -18.26 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: -0.76 Total: -35.33 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.24 Total: -5.75 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -2.17 Total: -2.75 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.45 -10.30 -39.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237294617.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.965 kcal (2) G-P(sol) polarization free energy of solvation -29.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds