Wall clock time and date at job start Tue Mar 31 2020 13:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38157 * 120.02112 * 2 1 4 4 C 1.38328 * 120.04264 * 179.97438 * 3 2 1 5 5 Br 1.89097 * 119.95331 * 179.97438 * 4 3 2 6 6 C 1.38362 * 120.09494 * 0.02562 * 4 3 2 7 7 C 1.50696 * 119.98054 * 179.97438 * 6 4 3 8 8 N 1.46901 * 109.47378 * 285.00293 * 7 6 4 9 9 C 1.47477 * 111.00114 * 265.96969 * 8 7 6 10 10 C 1.53511 * 87.93078 * 221.29602 * 9 8 7 11 11 C 1.50705 * 114.34220 * 139.68800 * 10 9 8 12 12 H 1.07997 * 119.99538 * 266.07457 * 11 10 9 13 13 C 1.37875 * 120.00223 * 86.07123 * 11 10 9 14 14 N 1.31513 * 120.00239 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99974 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47112 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47199 * 120.00055 * 15 13 11 18 18 H 1.48493 * 109.47311 * 240.00356 * 15 13 11 19 19 C 1.47483 * 111.00137 * 169.99830 * 8 7 6 20 20 C 1.38128 * 120.04494 * 359.96172 * 6 4 3 21 21 C 1.38705 * 120.02330 * 179.97438 * 2 1 3 22 22 O 1.35924 * 120.04534 * 359.75174 * 21 2 1 23 23 H 1.08996 * 109.47204 * 270.01901 * 1 2 3 24 24 H 1.08997 * 109.47132 * 30.02328 * 1 2 3 25 25 H 1.09005 * 109.47238 * 150.01842 * 1 2 3 26 26 H 1.07992 * 119.98018 * 359.97438 * 3 2 1 27 27 H 1.09003 * 109.47035 * 45.00139 * 7 6 4 28 28 H 1.09007 * 109.47110 * 165.00136 * 7 6 4 29 29 H 1.08999 * 113.47646 * 336.06470 * 9 8 7 30 30 H 1.09006 * 113.47437 * 106.52670 * 9 8 7 31 31 H 1.09000 * 114.16829 * 272.37437 * 10 9 8 32 32 H 0.96997 * 120.00535 * 179.97438 * 14 13 11 33 33 H 1.08999 * 113.47457 * 253.47122 * 19 8 7 34 34 H 1.08995 * 113.47333 * 23.87549 * 19 8 7 35 35 H 1.07999 * 120.02448 * 180.02562 * 20 6 4 36 36 H 0.96696 * 114.00396 * 89.99847 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1962 0.0000 4 6 3.5815 1.1967 0.0005 5 35 4.5250 2.8355 -0.0002 6 6 4.2758 -0.0001 0.0005 7 6 5.7827 0.0035 0.0005 8 7 6.2716 0.3632 -1.3372 9 6 6.5419 -0.8421 -2.1429 10 6 7.8137 -0.1491 -2.6516 11 6 9.0117 -1.0562 -2.7669 12 1 9.7157 -1.1272 -1.9510 13 6 9.2088 -1.7954 -3.9139 14 7 8.3517 -1.7087 -4.9076 15 14 10.6940 -2.9192 -4.0570 16 1 11.4988 -2.8369 -2.8118 17 1 10.2387 -4.3180 -4.2600 18 1 11.5250 -2.4965 -5.2128 19 6 7.7256 0.6096 -1.3200 20 6 3.5885 -1.1983 0.0008 21 6 2.2010 -1.2009 0.0005 22 8 1.5228 -2.3789 0.0062 23 1 -0.3633 0.0003 1.0276 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3634 -0.8902 -0.5136 26 1 1.6583 2.1315 -0.0004 27 1 6.1443 0.7310 0.7272 28 1 6.1484 -0.9884 0.2665 29 1 6.7415 -1.7299 -1.5427 30 1 5.8013 -1.0179 -2.9232 31 1 7.6602 0.4750 -3.5319 32 1 8.4906 -2.2285 -5.7147 33 1 7.9882 1.6642 -1.4030 34 1 8.2409 0.1102 -0.4997 35 1 4.1307 -2.1323 0.0012 36 1 1.3232 -2.7221 -0.8755 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237294617.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:08 Heat of formation + Delta-G solvation = -5.269259 kcal Electronic energy + Delta-G solvation = -19328.394438 eV Core-core repulsion = 16244.949412 eV Total energy + Delta-G solvation = -3083.445026 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.28426 -40.37487 -37.85708 -35.06067 -34.24441 -32.63862 -31.20672 -29.70518 -28.48132 -26.58081 -26.28873 -23.90725 -23.64617 -21.79373 -20.45073 -19.04436 -18.50164 -17.44650 -16.87585 -16.69403 -16.24688 -16.04609 -15.82773 -15.13707 -14.98418 -14.33595 -14.10230 -13.91753 -13.50959 -13.29666 -13.22479 -13.17245 -13.01211 -12.84811 -12.50433 -12.34377 -12.07415 -11.77178 -11.50240 -11.42779 -11.14278 -10.97492 -10.86709 -10.50252 -9.82587 -9.66888 -9.33602 -8.14574 -6.25749 -0.01765 0.18197 0.75536 1.41508 1.43827 1.55054 2.35986 2.43486 3.14831 3.16254 3.40832 3.65246 3.73917 3.96190 4.18582 4.26699 4.28832 4.42397 4.50708 4.59724 4.72162 4.72806 4.81072 4.85723 4.87617 4.98203 5.06013 5.16237 5.23671 5.25780 5.38142 5.52795 5.64058 5.68424 5.86341 6.30194 6.37614 6.75165 6.84122 7.42925 8.95347 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.004176 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.945152 B = 6703.792299 C = 8062.850530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.112 4.112 3 C -0.081 4.081 4 C -0.090 4.090 5 Br -0.044 7.044 6 C -0.043 4.043 7 C 0.053 3.947 8 N -0.462 5.462 9 C 0.020 3.980 10 C 0.023 3.977 11 C -0.528 4.528 12 H 0.060 0.940 13 C 0.016 3.984 14 N -0.922 5.922 15 Si 0.956 3.044 16 H -0.264 1.264 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.013 3.987 20 C -0.144 4.144 21 C 0.117 3.883 22 O -0.498 6.498 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.154 0.846 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.042 0.958 31 H 0.029 0.971 32 H 0.262 0.738 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.132 0.868 36 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.611 5.201 11.659 20.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.114 4.114 3 C -0.101 4.101 4 C -0.170 4.170 5 Br 0.042 6.958 6 C -0.046 4.046 7 C -0.076 4.076 8 N -0.184 5.184 9 C -0.109 4.109 10 C 0.003 3.997 11 C -0.567 4.567 12 H 0.078 0.922 13 C -0.183 4.183 14 N -0.561 5.561 15 Si 0.782 3.218 16 H -0.188 1.188 17 H -0.207 1.207 18 H -0.206 1.206 19 C -0.115 4.115 20 C -0.163 4.163 21 C 0.072 3.928 22 O -0.312 6.312 23 H 0.098 0.902 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.172 0.828 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.150 0.850 36 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -15.740 6.331 11.887 20.715 hybrid contribution 1.182 -1.788 -0.586 2.222 sum -14.558 4.543 11.301 18.981 Atomic orbital electron populations 1.20705 0.87820 1.03999 1.03416 1.20458 0.98477 0.91321 1.01153 1.21112 0.91182 0.99231 0.98569 1.21777 0.95046 0.91611 1.08565 1.96657 1.76625 1.25024 1.97498 1.19536 0.95478 0.91797 0.97785 1.21704 0.91052 1.00981 0.93830 1.68876 1.14919 1.24978 1.09594 1.23822 0.98662 0.92123 0.96282 1.20019 0.93102 0.94057 0.92476 1.21402 1.09078 1.24713 1.01464 0.92228 1.25800 0.98907 0.98322 0.95274 1.70101 1.37655 1.42025 1.06285 0.85536 0.79554 0.78471 0.78284 1.18813 1.20653 1.20649 1.23799 0.88393 1.00406 0.98921 1.21419 0.94293 0.97913 1.02719 1.18342 0.89175 0.85919 0.99399 1.84751 1.75834 1.35224 1.35366 0.90170 0.89977 0.90369 0.82798 0.89169 0.92910 0.93070 0.93981 0.95290 0.92896 0.90935 0.91940 0.85018 0.73072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 9.79 71.24 0.70 -0.80 16 2 C -0.11 -2.43 5.89 -19.77 -0.12 -2.55 16 3 C -0.08 -1.90 9.44 22.27 0.21 -1.69 16 4 C -0.09 -2.55 6.22 22.32 0.14 -2.41 16 5 Br -0.04 -1.22 31.91 -20.37 -0.65 -1.87 16 6 C -0.04 -1.33 5.47 -19.86 -0.11 -1.44 16 7 C 0.05 1.74 4.21 85.56 0.36 2.10 16 8 N -0.46 -18.23 6.06 -932.54 -5.65 -23.88 16 9 C 0.02 0.94 7.28 83.57 0.61 1.55 16 10 C 0.02 1.14 3.76 -11.20 -0.04 1.10 16 11 C -0.53 -28.70 8.83 25.60 0.23 -28.47 16 12 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 13 C 0.02 0.90 5.46 84.65 0.46 1.36 16 14 N -0.92 -53.85 13.26 21.45 0.28 -53.57 16 15 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 16 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 C 0.01 0.55 7.25 83.57 0.61 1.16 16 20 C -0.14 -4.06 9.61 22.37 0.21 -3.85 16 21 C 0.12 2.83 6.68 22.50 0.15 2.98 16 22 O -0.50 -10.00 12.55 -92.69 -1.16 -11.16 16 23 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 25 H 0.08 1.00 7.53 -2.38 -0.02 0.98 16 26 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 27 H 0.09 2.82 7.34 -2.39 -0.02 2.80 16 28 H 0.05 1.75 7.11 -2.38 -0.02 1.73 16 29 H 0.05 2.33 7.38 -2.39 -0.02 2.31 16 30 H 0.04 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.03 1.66 8.11 -2.39 -0.02 1.64 16 32 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 33 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.06 2.47 7.87 -2.39 -0.02 2.45 16 35 H 0.13 3.67 8.00 -2.91 -0.02 3.64 16 36 H 0.41 4.70 9.06 -74.06 -0.67 4.03 16 Total: -1.00 -63.09 323.60 -1.32 -64.41 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.42 Total: 12.05 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 3.41 Total: -30.95 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -5.37 Total: -77.45 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -1.16 Total: -11.16 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 35 Polarization: -1.22 SS G_CDS: -0.65 Total: -1.87 kcal Total: -63.09 -1.32 -64.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237294617.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.142 kcal (2) G-P(sol) polarization free energy of solvation -63.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds