Wall clock time and date at job start Tue Mar 31 2020 15:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86803 * 120.00330 * 2 1 4 4 H 1.48504 * 109.46928 * 270.00643 * 3 2 1 5 5 H 1.48496 * 109.46771 * 29.99881 * 3 2 1 6 6 H 1.48492 * 109.47237 * 150.00374 * 3 2 1 7 7 C 1.40134 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00212 * 166.18840 * 7 2 1 9 9 C 1.40708 * 119.99648 * 346.18212 * 7 2 1 10 10 C 1.40423 * 120.42910 * 332.07419 * 9 7 2 11 11 C 1.39955 * 117.98916 * 179.97438 * 10 9 7 12 12 C 1.40806 * 121.37792 * 180.02562 * 11 10 9 13 13 C 1.36101 * 119.47912 * 179.97438 * 12 11 10 14 14 C 1.39210 * 121.48402 * 0.02562 * 13 12 11 15 15 C 1.36202 * 121.76307 * 0.02562 * 14 13 12 16 16 C 1.40581 * 119.69940 * 359.95772 * 15 14 13 17 17 N 1.33503 * 120.96695 * 180.02562 * 16 15 14 18 18 C 1.31849 * 121.73725 * 180.02562 * 17 16 15 19 19 C 1.47190 * 119.47656 * 179.97438 * 18 17 16 20 20 C 1.36848 * 125.16226 * 317.49380 * 19 18 17 21 21 C 1.36624 * 114.74304 * 179.84889 * 20 19 18 22 22 C 1.36848 * 114.74099 * 0.43581 * 21 20 19 23 23 C 1.46562 * 125.16149 * 179.72804 * 22 21 20 24 24 O 1.21618 * 120.00190 * 0.02562 * 23 22 21 25 25 O 1.34896 * 120.00317 * 180.02562 * 23 22 21 26 26 S 1.75828 * 125.16280 * 137.79273 * 19 18 17 27 27 H 0.96999 * 120.00231 * 0.02562 * 1 2 3 28 28 H 1.07999 * 121.00506 * 359.97438 * 10 9 7 29 29 H 1.08005 * 120.25965 * 0.02562 * 12 11 10 30 30 H 1.08002 * 119.25988 * 180.02562 * 13 12 11 31 31 H 1.07998 * 119.11531 * 179.97438 * 14 13 12 32 32 H 1.07998 * 120.14956 * 180.02562 * 15 14 13 33 33 H 1.08000 * 122.63252 * 0.02562 * 20 19 18 34 34 H 1.07998 * 122.63224 * 180.18679 * 21 20 19 35 35 H 0.96689 * 117.00271 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4888 2.0464 -1.4001 5 1 1.4389 2.6526 0.7000 6 1 3.5390 1.4401 0.6999 7 6 2.0080 -1.2136 -0.0005 8 1 3.0646 -1.2270 -0.2238 9 6 1.3350 -2.4146 0.2900 10 6 0.1990 -2.4116 1.1155 11 6 -0.4310 -3.6350 1.3703 12 6 -1.5750 -3.7144 2.1874 13 6 -2.1571 -4.9245 2.4090 14 6 -1.6468 -6.0909 1.8458 15 6 -0.5429 -6.0784 1.0481 16 6 0.1074 -4.8617 0.7777 17 7 1.1909 -4.8202 -0.0011 18 6 1.8129 -3.6878 -0.2643 19 6 3.0039 -3.6996 -1.1291 20 6 4.0114 -4.6238 -1.0702 21 6 5.0154 -4.4337 -1.9771 22 6 4.8542 -3.3448 -2.7902 23 6 5.7921 -2.9258 -3.8356 24 8 6.8075 -3.5653 -4.0335 25 8 5.5291 -1.8309 -4.5784 26 16 3.3516 -2.5242 -2.3897 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1771 -1.4929 1.5408 29 1 -1.9879 -2.8219 2.6340 30 1 -3.0347 -4.9813 3.0359 31 1 -2.1389 -7.0308 2.0475 32 1 -0.1694 -6.9989 0.6244 33 1 4.0115 -5.4410 -0.3642 34 1 5.8712 -5.0890 -2.0444 35 1 6.1773 -1.5938 -5.2555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240846396.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:22 Heat of formation + Delta-G solvation = -20.815563 kcal Electronic energy + Delta-G solvation = -23438.822247 eV Core-core repulsion = 19878.483395 eV Total energy + Delta-G solvation = -3560.338852 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.056 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.87010 -39.15458 -37.25754 -36.07353 -35.69727 -34.36300 -31.88829 -30.88618 -29.48568 -28.33836 -25.95501 -25.29453 -22.67629 -21.95252 -21.82678 -20.77243 -18.65194 -18.52822 -18.17476 -17.30515 -16.51693 -16.08673 -15.47766 -15.28796 -15.17461 -14.88934 -14.04569 -13.67260 -13.48868 -13.27952 -12.94072 -12.89089 -12.49641 -12.35525 -12.03699 -11.88696 -11.78674 -11.51657 -11.42585 -11.24682 -10.93566 -10.82276 -10.66915 -10.55996 -10.29168 -10.14157 -9.74987 -9.17545 -8.66494 -8.41830 -8.06528 -7.52371 -7.29634 -7.16121 -4.77975 0.52862 1.42659 1.81061 1.99598 2.41241 2.56027 2.78652 2.85790 2.90897 3.18625 3.22615 3.35768 3.61127 3.77546 4.48204 4.99070 5.28941 5.44968 5.48500 5.52073 5.58151 5.71289 5.84942 6.00321 6.10930 6.15000 6.32295 6.39924 6.51048 6.59338 6.64100 6.70887 6.73885 6.86026 7.07261 7.20722 7.23757 7.46942 7.53895 7.72642 7.99302 8.04779 8.23778 8.29566 8.99263 9.68070 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.011226 B = 0.005034 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.698839 B = 5560.331322 C = 7785.340661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.431 4.431 8 H 0.094 0.906 9 C 0.081 3.919 10 C -0.160 4.160 11 C -0.043 4.043 12 C -0.127 4.127 13 C -0.114 4.114 14 C -0.175 4.175 15 C -0.056 4.056 16 C 0.028 3.972 17 N -0.439 5.439 18 C 0.109 3.891 19 C -0.055 4.055 20 C -0.161 4.161 21 C -0.034 4.034 22 C -0.313 4.313 23 C 0.564 3.436 24 O -0.523 6.523 25 O -0.513 6.513 26 S 0.262 5.738 27 H 0.291 0.709 28 H 0.135 0.865 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.491 -0.477 -1.831 3.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.147 4.147 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.460 4.460 8 H 0.112 0.888 9 C 0.075 3.925 10 C -0.185 4.185 11 C -0.046 4.046 12 C -0.147 4.147 13 C -0.133 4.133 14 C -0.195 4.195 15 C -0.075 4.075 16 C -0.097 4.097 17 N -0.146 5.146 18 C -0.044 4.044 19 C -0.176 4.176 20 C -0.191 4.191 21 C -0.069 4.069 22 C -0.431 4.431 23 C 0.410 3.590 24 O -0.415 6.415 25 O -0.325 6.325 26 S 0.534 5.466 27 H 0.103 0.897 28 H 0.153 0.847 29 H 0.131 0.869 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 1.770 -0.093 -2.532 3.091 hybrid contribution 1.027 0.379 0.496 1.202 sum 2.797 0.287 -2.036 3.471 Atomic orbital electron populations 1.69721 1.07842 1.30610 1.30570 1.26029 0.94889 1.01851 0.91912 0.86226 0.80843 0.79519 0.80213 1.18447 1.19504 1.17721 1.19723 0.97314 0.90369 1.38563 0.88783 1.19171 0.92393 0.91104 0.89849 1.21531 0.99498 0.95656 1.01864 1.19725 0.94859 0.93936 0.96109 1.20882 0.96276 0.97210 1.00295 1.20527 0.99553 0.92946 1.00234 1.20309 0.98910 0.97607 1.02703 1.20534 0.94519 0.95794 0.96679 1.19273 0.95593 0.92609 1.02254 1.67344 1.06833 1.28139 1.12331 1.20035 0.95194 0.89959 0.99253 1.23482 0.97259 0.98035 0.98774 1.20366 0.93847 1.02047 1.02826 1.20323 0.99068 0.94887 0.92620 1.23527 1.05112 1.07071 1.07430 1.19458 0.83381 0.77149 0.79054 1.90887 1.27390 1.54736 1.68469 1.84646 1.54089 1.44807 1.48927 1.84688 1.12072 1.24564 1.25279 0.89734 0.84698 0.86878 0.87633 0.87469 0.86685 0.83604 0.83830 0.73059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.06 10.97 55.56 0.61 -16.45 16 2 C 0.08 1.63 5.21 -17.31 -0.09 1.54 16 3 Si 0.91 16.26 29.58 -169.99 -5.03 11.23 16 4 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 5 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 6 H -0.25 -4.54 7.11 56.52 0.40 -4.14 16 7 C -0.43 -9.74 7.43 -37.94 -0.28 -10.02 16 8 H 0.09 2.04 6.27 -52.49 -0.33 1.71 16 9 C 0.08 1.92 5.70 -104.66 -0.60 1.32 16 10 C -0.16 -3.77 8.51 -38.12 -0.32 -4.10 16 11 C -0.04 -0.98 5.87 -104.96 -0.62 -1.60 16 12 C -0.13 -2.48 9.80 -39.38 -0.39 -2.86 16 13 C -0.11 -1.96 9.91 -39.99 -0.40 -2.36 16 14 C -0.17 -2.99 9.90 -39.95 -0.40 -3.39 16 15 C -0.06 -1.08 9.99 -39.43 -0.39 -1.48 16 16 C 0.03 0.64 6.75 -82.94 -0.56 0.08 16 17 N -0.44 -10.08 10.17 -4.93 -0.05 -10.13 16 18 C 0.11 2.50 6.80 -80.74 -0.55 1.95 16 19 C -0.05 -1.10 5.64 -36.45 -0.21 -1.31 16 20 C -0.16 -2.87 10.07 -40.67 -0.41 -3.28 16 21 C -0.03 -0.56 9.88 -40.67 -0.40 -0.96 16 22 C -0.31 -5.31 6.44 -36.73 -0.24 -5.55 16 23 C 0.56 8.93 8.31 34.09 0.28 9.21 16 24 O -0.52 -9.16 17.60 -19.36 -0.34 -9.50 16 25 O -0.51 -6.50 13.27 -41.03 -0.54 -7.04 16 26 S 0.26 4.80 20.48 -107.50 -2.20 2.60 16 27 H 0.29 5.85 8.29 -40.82 -0.34 5.52 16 28 H 0.14 3.21 6.34 -52.49 -0.33 2.87 16 29 H 0.11 2.00 8.06 -52.48 -0.42 1.57 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.12 2.00 8.06 -52.49 -0.42 1.57 16 33 H 0.15 2.44 8.06 -52.49 -0.42 2.02 16 34 H 0.14 2.07 8.03 -52.49 -0.42 1.65 16 35 H 0.41 2.97 9.11 45.56 0.42 3.38 16 LS Contribution 327.94 15.07 4.94 4.94 Total: -1.00 -27.26 327.94 -10.09 -37.35 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -1.92 Total: 9.79 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -5.56 Total: -22.79 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.56 Total: -26.58 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.89 Total: -16.54 kcal Atomic # 14 Polarization: 16.26 SS G_CDS: -5.03 Total: 11.23 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -2.20 Total: 2.60 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.26 -10.09 -37.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240846396.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.538 kcal (2) G-P(sol) polarization free energy of solvation -27.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds