Wall clock time and date at job start Tue Mar 31 2020 15:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86803 * 120.00330 * 2 1 4 4 H 1.48504 * 109.46928 * 270.00643 * 3 2 1 5 5 H 1.48496 * 109.46771 * 29.99881 * 3 2 1 6 6 H 1.48492 * 109.47237 * 150.00374 * 3 2 1 7 7 C 1.40134 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00212 * 166.18840 * 7 2 1 9 9 C 1.40708 * 119.99648 * 346.18212 * 7 2 1 10 10 C 1.40423 * 120.42910 * 332.07419 * 9 7 2 11 11 C 1.39955 * 117.98916 * 179.97438 * 10 9 7 12 12 C 1.40806 * 121.37792 * 180.02562 * 11 10 9 13 13 C 1.36101 * 119.47912 * 179.97438 * 12 11 10 14 14 C 1.39210 * 121.48402 * 0.02562 * 13 12 11 15 15 C 1.36202 * 121.76307 * 0.02562 * 14 13 12 16 16 C 1.40581 * 119.69940 * 359.95772 * 15 14 13 17 17 N 1.33503 * 120.96695 * 180.02562 * 16 15 14 18 18 C 1.31849 * 121.73725 * 180.02562 * 17 16 15 19 19 C 1.47190 * 119.47656 * 179.97438 * 18 17 16 20 20 C 1.36848 * 125.16226 * 317.49380 * 19 18 17 21 21 C 1.36624 * 114.74304 * 179.84889 * 20 19 18 22 22 C 1.36848 * 114.74099 * 0.43581 * 21 20 19 23 23 C 1.46562 * 125.16149 * 179.72804 * 22 21 20 24 24 O 1.21618 * 120.00190 * 0.02562 * 23 22 21 25 25 O 1.34896 * 120.00317 * 180.02562 * 23 22 21 26 26 S 1.75828 * 125.16280 * 137.79273 * 19 18 17 27 27 H 0.96999 * 120.00231 * 0.02562 * 1 2 3 28 28 H 1.07999 * 121.00506 * 359.97438 * 10 9 7 29 29 H 1.08005 * 120.25965 * 0.02562 * 12 11 10 30 30 H 1.08002 * 119.25988 * 180.02562 * 13 12 11 31 31 H 1.07998 * 119.11531 * 179.97438 * 14 13 12 32 32 H 1.07998 * 120.14956 * 180.02562 * 15 14 13 33 33 H 1.08000 * 122.63252 * 0.02562 * 20 19 18 34 34 H 1.07998 * 122.63224 * 180.18679 * 21 20 19 35 35 H 0.96689 * 117.00271 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4888 2.0464 -1.4001 5 1 1.4389 2.6526 0.7000 6 1 3.5390 1.4401 0.6999 7 6 2.0080 -1.2136 -0.0005 8 1 3.0646 -1.2270 -0.2238 9 6 1.3350 -2.4146 0.2900 10 6 0.1990 -2.4116 1.1155 11 6 -0.4310 -3.6350 1.3703 12 6 -1.5750 -3.7144 2.1874 13 6 -2.1571 -4.9245 2.4090 14 6 -1.6468 -6.0909 1.8458 15 6 -0.5429 -6.0784 1.0481 16 6 0.1074 -4.8617 0.7777 17 7 1.1909 -4.8202 -0.0011 18 6 1.8129 -3.6878 -0.2643 19 6 3.0039 -3.6996 -1.1291 20 6 4.0114 -4.6238 -1.0702 21 6 5.0154 -4.4337 -1.9771 22 6 4.8542 -3.3448 -2.7902 23 6 5.7921 -2.9258 -3.8356 24 8 6.8075 -3.5653 -4.0335 25 8 5.5291 -1.8309 -4.5784 26 16 3.3516 -2.5242 -2.3897 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1771 -1.4929 1.5408 29 1 -1.9879 -2.8219 2.6340 30 1 -3.0347 -4.9813 3.0359 31 1 -2.1389 -7.0308 2.0475 32 1 -0.1694 -6.9989 0.6244 33 1 4.0115 -5.4410 -0.3642 34 1 5.8712 -5.0890 -2.0444 35 1 6.1773 -1.5938 -5.2555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240846396.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:21 Heat of formation + Delta-G solvation = -34.797802 kcal Electronic energy + Delta-G solvation = -23439.428562 eV Core-core repulsion = 19878.483395 eV Total energy + Delta-G solvation = -3560.945167 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.056 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.09692 -40.73653 -38.65830 -37.50023 -36.96258 -35.97754 -33.49016 -32.38440 -31.04570 -29.79442 -27.54393 -26.74463 -24.13015 -23.50455 -23.21995 -22.34649 -20.08592 -19.89493 -19.61252 -18.64931 -18.03987 -17.62978 -16.73798 -16.69407 -16.58053 -16.37332 -15.45756 -15.15708 -14.97757 -14.81314 -14.47476 -14.20123 -13.96312 -13.79472 -13.58981 -13.37915 -13.27049 -12.95789 -12.77860 -12.62418 -12.35238 -12.26801 -12.09676 -11.95676 -11.70732 -11.66378 -11.33238 -10.78706 -10.26718 -9.95119 -9.49097 -9.13183 -8.86342 -8.74003 -6.46637 -0.89810 -0.08375 0.25675 0.54282 1.00060 1.19516 1.34526 1.38503 1.50962 1.67836 1.94410 2.06469 2.12772 2.24875 2.88981 3.46130 3.63783 3.97666 4.04586 4.25483 4.25920 4.34479 4.47857 4.51146 4.60225 4.64130 4.82478 5.00477 5.04648 5.13354 5.23489 5.32998 5.36120 5.49341 5.50397 5.65849 5.75141 5.83217 5.90137 6.19216 6.39379 6.58377 6.63405 6.93403 7.31428 8.11446 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.011226 B = 0.005034 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.698839 B = 5560.331322 C = 7785.340661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.044 3.956 3 Si 0.968 3.032 4 H -0.252 1.252 5 H -0.263 1.263 6 H -0.254 1.254 7 C -0.449 4.449 8 H 0.096 0.904 9 C 0.054 3.946 10 C -0.187 4.187 11 C -0.064 4.064 12 C -0.149 4.149 13 C -0.100 4.100 14 C -0.158 4.158 15 C -0.073 4.073 16 C 0.001 3.999 17 N -0.453 5.453 18 C 0.098 3.902 19 C -0.090 4.090 20 C -0.147 4.147 21 C -0.032 4.032 22 C -0.306 4.306 23 C 0.572 3.428 24 O -0.539 6.539 25 O -0.506 6.506 26 S 0.256 5.744 27 H 0.298 0.702 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.131 0.869 33 H 0.153 0.847 34 H 0.169 0.831 35 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.678 -1.211 -1.962 3.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.176 4.176 3 Si 0.787 3.213 4 H -0.176 1.176 5 H -0.187 1.187 6 H -0.177 1.177 7 C -0.478 4.478 8 H 0.113 0.887 9 C 0.049 3.951 10 C -0.213 4.213 11 C -0.067 4.067 12 C -0.168 4.168 13 C -0.118 4.118 14 C -0.179 4.179 15 C -0.092 4.092 16 C -0.124 4.124 17 N -0.161 5.161 18 C -0.056 4.056 19 C -0.211 4.211 20 C -0.177 4.177 21 C -0.066 4.066 22 C -0.425 4.425 23 C 0.417 3.583 24 O -0.432 6.432 25 O -0.321 6.321 26 S 0.527 5.473 27 H 0.109 0.891 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.166 0.834 31 H 0.168 0.832 32 H 0.149 0.851 33 H 0.171 0.829 34 H 0.186 0.814 35 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 1.938 -0.820 -2.674 3.403 hybrid contribution 0.917 0.458 0.517 1.148 sum 2.855 -0.362 -2.157 3.597 Atomic orbital electron populations 1.69770 1.09101 1.31663 1.31437 1.26760 0.95434 1.04348 0.91059 0.85367 0.79533 0.75866 0.80485 1.17633 1.18713 1.17743 1.19849 0.97432 0.90801 1.39676 0.88651 1.19492 0.93033 0.92161 0.90447 1.21501 1.00700 0.95863 1.03274 1.20035 0.96009 0.93696 0.96914 1.21096 0.95983 0.99013 1.00711 1.21021 0.99872 0.91802 0.99067 1.20832 0.97443 0.99368 1.00212 1.20822 0.95434 0.95208 0.97755 1.19829 0.96035 0.93887 1.02674 1.67395 1.07423 1.28289 1.12987 1.20356 0.95989 0.89713 0.99515 1.23473 0.97579 0.99953 1.00059 1.20528 0.93293 1.01275 1.02653 1.20510 0.99251 0.95017 0.91820 1.23778 1.04463 1.06696 1.07528 1.19194 0.82622 0.77565 0.78875 1.90890 1.27855 1.55486 1.68960 1.84597 1.55007 1.43215 1.49269 1.84606 1.12960 1.24596 1.25106 0.89105 0.85983 0.85934 0.83449 0.83198 0.85115 0.82892 0.81368 0.70101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.08 10.97 21.86 0.24 -36.84 16 2 C 0.04 1.94 5.21 85.32 0.44 2.39 16 3 Si 0.97 33.63 29.58 68.60 2.03 35.66 16 4 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16 5 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 6 H -0.25 -8.73 7.11 99.48 0.71 -8.03 16 7 C -0.45 -21.23 7.43 23.33 0.17 -21.05 16 8 H 0.10 4.32 6.27 -2.91 -0.02 4.30 16 9 C 0.05 2.73 5.70 -19.89 -0.11 2.62 16 10 C -0.19 -9.40 8.51 23.22 0.20 -9.21 16 11 C -0.06 -2.98 5.87 -20.09 -0.12 -3.10 16 12 C -0.15 -5.76 9.80 22.40 0.22 -5.54 16 13 C -0.10 -3.14 9.91 22.01 0.22 -2.93 16 14 C -0.16 -4.91 9.90 22.03 0.22 -4.69 16 15 C -0.07 -2.74 9.99 22.37 0.22 -2.52 16 16 C 0.00 0.03 6.75 41.61 0.28 0.31 16 17 N -0.45 -21.52 10.17 -169.51 -1.72 -23.25 16 18 C 0.10 4.69 6.80 43.75 0.30 4.99 16 19 C -0.09 -3.72 5.64 24.30 0.14 -3.58 16 20 C -0.15 -5.20 10.07 21.57 0.22 -4.98 16 21 C -0.03 -1.00 9.88 21.57 0.21 -0.78 16 22 C -0.31 -10.01 6.44 24.12 0.16 -9.85 16 23 C 0.57 16.93 8.31 69.99 0.58 17.51 16 24 O -0.54 -17.64 17.60 19.45 0.34 -17.30 16 25 O -0.51 -11.61 13.27 -58.11 -0.77 -12.38 16 26 S 0.26 9.43 20.48 -56.49 -1.16 8.27 16 27 H 0.30 12.41 8.29 -92.71 -0.77 11.64 16 28 H 0.12 6.23 6.34 -2.91 -0.02 6.22 16 29 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 30 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 31 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 32 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 33 H 0.15 5.09 8.06 -2.91 -0.02 5.07 16 34 H 0.17 4.44 8.03 -2.91 -0.02 4.42 16 35 H 0.44 5.01 9.11 -74.06 -0.67 4.34 16 Total: -1.00 -61.33 327.94 2.80 -58.53 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.50 Total: 27.73 kcal Atomic # 6 Polarization: -43.77 SS G_CDS: 3.35 Total: -40.42 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -1.48 Total: -60.09 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.43 Total: -29.68 kcal Atomic # 14 Polarization: 33.63 SS G_CDS: 2.03 Total: 35.66 kcal Atomic # 16 Polarization: 9.43 SS G_CDS: -1.16 Total: 8.27 kcal Total: -61.33 2.80 -58.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240846396.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.731 kcal (2) G-P(sol) polarization free energy of solvation -61.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds