Wall clock time and date at job start Tue Mar 31 2020 15:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35986 * 117.00162 * 2 1 4 4 C 1.38699 * 120.00634 * 90.00138 * 3 2 1 5 5 F 1.35094 * 120.10611 * 359.95544 * 4 3 2 6 6 C 1.39430 * 119.79322 * 179.97438 * 4 3 2 7 7 C 1.48357 * 120.09890 * 180.02562 * 6 4 3 8 8 C 1.39017 * 120.41678 * 244.72369 * 7 6 4 9 9 C 1.40961 * 118.12733 * 179.71582 * 8 7 6 10 10 C 1.41368 * 120.57465 * 180.25673 * 9 8 7 11 11 H 1.07997 * 120.00001 * 203.75065 * 10 9 8 12 12 C 1.39902 * 119.99641 * 23.75603 * 10 9 8 13 13 N 1.30853 * 120.00384 * 17.41372 * 12 10 9 14 14 Si 1.86802 * 119.99521 * 197.41602 * 12 10 9 15 15 H 1.48503 * 109.47301 * 90.00172 * 14 12 10 16 16 H 1.48500 * 109.47060 * 209.99857 * 14 12 10 17 17 H 1.48502 * 109.47564 * 329.99551 * 14 12 10 18 18 C 1.40812 * 118.85017 * 0.55254 * 9 8 7 19 19 N 1.31503 * 120.69894 * 359.70585 * 18 9 8 20 20 C 1.32159 * 122.07725 * 0.02562 * 19 18 9 21 21 F 1.35099 * 119.45571 * 180.02562 * 20 19 18 22 22 C 1.39408 * 119.80714 * 359.97438 * 6 4 3 23 23 C 1.37994 * 120.00567 * 0.02562 * 22 6 4 24 24 C 1.38406 * 120.20771 * 359.73933 * 23 22 6 25 25 Cl 1.73598 * 119.89958 * 180.25495 * 24 23 22 26 26 H 1.08998 * 109.46983 * 60.00031 * 1 2 3 27 27 H 1.09002 * 109.47060 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47004 * 299.99868 * 1 2 3 29 29 H 1.07996 * 120.93968 * 0.02562 * 8 7 6 30 30 H 0.96999 * 120.00522 * 179.97438 * 13 12 10 31 31 H 1.07994 * 119.64535 * 179.72730 * 18 9 8 32 32 H 1.07993 * 119.99513 * 180.02562 * 22 6 4 33 33 H 1.08008 * 119.88956 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 2.3613 1.8296 1.2011 5 9 2.0549 1.2302 2.3724 6 6 2.9948 3.0717 1.1959 7 6 3.3353 3.7386 2.4767 8 6 2.7319 4.9412 2.8262 9 6 3.0865 5.5296 4.0570 10 6 2.5007 6.7493 4.4663 11 1 3.0134 7.3841 5.1737 12 6 1.2566 7.1340 3.9548 13 7 0.4824 6.2482 3.3819 14 14 0.7008 8.9123 4.0899 15 1 1.1482 9.6633 2.8894 16 1 -0.7806 8.9623 4.1814 17 1 1.2927 9.5250 5.3062 18 6 4.0392 4.8846 4.8690 19 7 4.5857 3.7499 4.4907 20 6 4.2731 3.1674 3.3464 21 9 4.8669 2.0014 3.0104 22 6 3.3083 3.6846 -0.0163 23 6 2.9913 3.0625 -1.2065 24 6 2.3668 1.8273 -1.2019 25 17 1.9775 1.0488 -2.7039 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.0080 5.4089 2.1754 30 1 -0.3803 6.5148 3.0276 31 1 4.3236 5.3263 5.8125 32 1 3.7994 4.6464 -0.0239 33 1 3.2354 3.5388 -2.1446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243576939.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:34 Heat of formation + Delta-G solvation = -95.698147 kcal Electronic energy + Delta-G solvation = -24737.543676 eV Core-core repulsion = 20617.684435 eV Total energy + Delta-G solvation = -4119.859241 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.10927 -49.44926 -41.03581 -40.18498 -38.56780 -37.60506 -36.05031 -33.94274 -32.25634 -31.40306 -30.06317 -27.95569 -27.42351 -25.06322 -24.03417 -23.46933 -22.50594 -19.68218 -19.03043 -18.57029 -18.41915 -18.21017 -17.78848 -17.24429 -16.84202 -16.53185 -16.24850 -16.09718 -15.88656 -15.54753 -15.10700 -14.59624 -14.31391 -14.24807 -14.02202 -13.88153 -13.70805 -13.51768 -13.28162 -13.03298 -12.88969 -12.76771 -12.49686 -12.24330 -12.11166 -11.83043 -11.26231 -11.23476 -10.52114 -10.38643 -9.91078 -9.80891 -9.42588 -8.82060 -6.53142 -0.40899 -0.21150 0.44150 0.76299 0.84514 1.43436 1.50827 1.57586 2.03008 2.17203 2.43369 2.56799 3.05665 3.20417 3.39733 3.46686 3.69543 3.91692 4.06186 4.24183 4.31286 4.32325 4.47668 4.58895 4.63608 4.71258 4.82654 4.84898 5.02823 5.10974 5.11898 5.33559 5.50168 5.68247 5.85415 6.13553 6.31372 6.56007 6.61111 7.28161 8.12655 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.014074 B = 0.004331 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.014587 B = 6464.151764 C = 7359.485918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.334 6.334 3 C 0.066 3.934 4 C 0.080 3.920 5 F -0.140 7.140 6 C -0.056 4.056 7 C -0.099 4.099 8 C -0.107 4.107 9 C 0.036 3.964 10 C -0.453 4.453 11 H 0.101 0.899 12 C 0.039 3.961 13 N -0.807 5.807 14 Si 0.991 3.009 15 H -0.257 1.257 16 H -0.271 1.271 17 H -0.253 1.253 18 C 0.000 4.000 19 N -0.503 5.503 20 C 0.137 3.863 21 F -0.148 7.148 22 C -0.068 4.068 23 C -0.087 4.087 24 C -0.036 4.036 25 Cl -0.031 7.031 26 H 0.063 0.937 27 H 0.125 0.875 28 H 0.039 0.961 29 H 0.139 0.861 30 H 0.298 0.702 31 H 0.158 0.842 32 H 0.164 0.836 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.291 -1.476 -12.045 12.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.251 6.251 3 C 0.020 3.980 4 C 0.060 3.940 5 F -0.118 7.118 6 C -0.058 4.058 7 C -0.102 4.102 8 C -0.132 4.132 9 C 0.031 3.969 10 C -0.481 4.481 11 H 0.119 0.881 12 C -0.180 4.180 13 N -0.431 5.431 14 Si 0.811 3.189 15 H -0.181 1.181 16 H -0.196 1.196 17 H -0.177 1.177 18 C -0.161 4.161 19 N -0.214 5.214 20 C -0.016 4.016 21 F -0.128 7.128 22 C -0.086 4.086 23 C -0.105 4.105 24 C -0.063 4.063 25 Cl -0.001 7.001 26 H 0.082 0.918 27 H 0.144 0.856 28 H 0.057 0.943 29 H 0.156 0.844 30 H 0.109 0.891 31 H 0.176 0.824 32 H 0.182 0.818 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.881 -2.281 -11.737 12.298 hybrid contribution -0.983 0.336 0.180 1.054 sum -3.863 -1.945 -11.557 12.340 Atomic orbital electron populations 1.23317 0.76662 1.05484 1.01185 1.86071 1.22097 1.22823 1.94129 1.18221 1.01612 0.88477 0.89710 1.18220 1.02347 0.92413 0.80993 1.91457 1.91016 1.83038 1.46313 1.18944 0.99356 0.92732 0.94767 1.19032 0.99177 0.97608 0.94404 1.21697 1.00620 0.93917 0.96959 1.18807 0.92455 0.94251 0.91406 1.19959 1.02556 1.02783 1.22792 0.88143 1.26913 0.95446 1.04005 0.91628 1.69811 1.09569 1.37282 1.26465 0.85037 0.77805 0.75564 0.80517 1.18140 1.19554 1.17678 1.22647 1.01398 0.91466 1.00631 1.66260 1.27225 1.12453 1.15511 1.17739 1.01535 0.87185 0.95092 1.91387 1.83677 1.46000 1.91763 1.21380 0.97640 1.00718 0.88901 1.21324 0.96921 0.92086 1.00162 1.21144 1.03512 0.95087 0.86568 1.98365 1.92607 1.80565 1.28608 0.91811 0.85650 0.94251 0.84387 0.89097 0.82437 0.81850 0.79598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.13 113.37 1.26 1.90 16 2 O -0.33 -10.48 9.73 -93.39 -0.91 -11.39 16 3 C 0.07 2.18 5.72 22.51 0.13 2.31 16 4 C 0.08 3.21 7.08 22.67 0.16 3.37 16 5 F -0.14 -6.34 16.53 44.97 0.74 -5.60 16 6 C -0.06 -2.22 5.03 -20.01 -0.10 -2.32 16 7 C -0.10 -4.61 5.01 -19.95 -0.10 -4.71 16 8 C -0.11 -5.13 8.50 23.12 0.20 -4.93 16 9 C 0.04 1.75 5.59 -21.21 -0.12 1.63 16 10 C -0.45 -20.87 9.08 23.44 0.21 -20.65 16 11 H 0.10 4.29 7.90 -2.91 -0.02 4.27 16 12 C 0.04 1.65 5.18 85.24 0.44 2.09 16 13 N -0.81 -36.69 10.92 21.82 0.24 -36.45 16 14 Si 0.99 32.10 29.59 68.60 2.03 34.13 16 15 H -0.26 -8.02 7.11 99.48 0.71 -7.32 16 16 H -0.27 -8.55 7.11 99.48 0.71 -7.84 16 17 H -0.25 -7.98 7.11 99.48 0.71 -7.27 16 18 C 0.00 0.02 10.96 85.37 0.94 0.96 16 19 N -0.50 -25.83 10.33 -193.72 -2.00 -27.83 16 20 C 0.14 6.97 8.22 85.09 0.70 7.67 16 21 F -0.15 -7.45 16.68 44.97 0.75 -6.70 16 22 C -0.07 -2.05 9.73 22.49 0.22 -1.83 16 23 C -0.09 -2.08 9.81 22.25 0.22 -1.86 16 24 C -0.04 -0.97 6.33 22.44 0.14 -0.82 16 25 Cl -0.03 -0.68 28.48 -2.72 -0.08 -0.75 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.14 6.58 6.19 -2.91 -0.02 6.56 16 30 H 0.30 12.10 8.30 -92.71 -0.77 11.33 16 31 H 0.16 6.78 8.06 -2.91 -0.02 6.75 16 32 H 0.16 4.27 8.06 -2.91 -0.02 4.25 16 33 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -60.02 321.94 6.25 -53.77 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 1.18 Total: 18.03 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: 4.30 Total: -17.21 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: -1.76 Total: -64.28 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.91 Total: -11.39 kcal Atomic # 9 Polarization: -13.79 SS G_CDS: 1.49 Total: -12.29 kcal Atomic # 14 Polarization: 32.10 SS G_CDS: 2.03 Total: 34.13 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.75 kcal Total: -60.02 6.25 -53.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243576939.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.931 kcal (2) G-P(sol) polarization free energy of solvation -60.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds