Wall clock time and date at job start Tue Mar 31 2020 15:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76203 * 103.00191 * 2 1 4 4 C 1.39175 * 119.96633 * 269.72875 * 3 2 1 5 5 F 1.35098 * 119.98336 * 359.97438 * 4 3 2 6 6 C 1.38054 * 120.02744 * 179.72207 * 4 3 2 7 7 C 1.39421 * 119.96784 * 0.56948 * 6 4 3 8 8 C 1.48327 * 120.03170 * 179.67751 * 7 6 4 9 9 C 1.39029 * 120.41947 * 310.02545 * 8 7 6 10 10 C 1.40949 * 118.12465 * 179.97438 * 9 8 7 11 11 C 1.41377 * 120.57148 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99785 * 150.44025 * 11 10 9 13 13 C 1.39893 * 119.99814 * 330.44603 * 11 10 9 14 14 N 1.30863 * 119.99734 * 161.73967 * 13 11 10 15 15 Si 1.86800 * 120.00018 * 341.74207 * 13 11 10 16 16 H 1.48490 * 109.47213 * 95.41199 * 15 13 11 17 17 H 1.48504 * 109.46828 * 215.41248 * 15 13 11 18 18 H 1.48502 * 109.47140 * 335.40661 * 15 13 11 19 19 C 1.40810 * 118.85733 * 0.02562 * 10 9 8 20 20 N 1.31510 * 120.70368 * 359.97291 * 19 10 9 21 21 C 1.32157 * 122.07926 * 359.77466 * 20 19 10 22 22 F 1.35097 * 119.46286 * 180.26730 * 21 20 19 23 23 C 1.39428 * 119.93984 * 359.70407 * 7 6 4 24 24 C 1.38048 * 119.96962 * 359.97438 * 23 7 6 25 25 F 1.35100 * 119.98238 * 179.97438 * 24 23 7 26 26 H 1.09000 * 109.47025 * 300.00399 * 1 2 3 27 27 H 1.08998 * 109.46609 * 59.99813 * 1 2 3 28 28 H 1.08997 * 109.47026 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.01248 * 180.27021 * 6 4 3 30 30 H 1.08002 * 120.93819 * 359.95164 * 9 8 7 31 31 H 0.96997 * 120.00467 * 179.97438 * 14 13 11 32 32 H 1.07994 * 119.64727 * 179.97438 * 19 10 9 33 33 H 1.08006 * 120.01291 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7169 0.0000 4 6 2.3724 2.3929 -1.2057 5 9 2.2261 1.7324 -2.3751 6 6 2.6774 3.7394 -1.2072 7 6 2.8348 4.4191 -0.0001 8 6 3.1695 5.8641 -0.0001 9 6 4.2228 6.3428 -0.7711 10 6 4.4981 7.7246 -0.7352 11 6 5.5574 8.2668 -1.4985 12 1 5.4976 9.2827 -1.8600 13 6 6.6830 7.4873 -1.7855 14 7 7.4851 7.8305 -2.7609 15 14 7.0411 5.9566 -0.7765 16 1 6.4890 4.7657 -1.4708 17 1 8.5094 5.8007 -0.6177 18 1 6.4097 6.0867 0.5613 19 6 3.7006 8.5557 0.0748 20 7 2.7148 8.0540 0.7862 21 6 2.4251 6.7647 0.7731 22 9 1.3971 6.3070 1.5206 23 6 2.6778 3.7392 1.2070 24 6 2.3664 2.3944 1.2055 25 9 2.2147 1.7352 2.3750 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.7987 4.2647 -2.1429 30 1 4.8136 5.6745 -1.3801 31 1 8.2658 7.2903 -2.9598 32 1 3.9006 9.6163 0.1122 33 1 2.7999 4.2646 2.1427 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243690162.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:20 Heat of formation + Delta-G solvation = -81.127817 kcal Electronic energy + Delta-G solvation = -24338.119727 eV Core-core repulsion = 20233.308799 eV Total energy + Delta-G solvation = -4104.810928 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.044 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.11111 -49.06588 -47.96528 -39.40464 -38.18378 -34.28183 -32.97286 -31.38831 -30.48129 -29.35171 -28.81756 -25.67161 -24.13023 -23.16405 -22.30454 -21.03731 -18.45964 -17.86322 -17.38446 -17.36215 -17.00038 -16.28081 -16.07862 -15.63661 -15.49458 -15.37443 -15.22840 -14.91368 -14.43973 -14.16080 -13.64696 -13.60583 -13.28801 -13.23923 -12.96195 -12.63638 -12.56044 -12.37435 -12.23135 -12.06313 -11.82508 -11.57248 -11.15694 -10.88953 -10.56642 -10.32779 -9.76720 -9.41826 -8.86178 -8.71578 -8.60337 -7.97498 -7.95120 -7.37913 -4.91843 0.38340 0.91451 1.41252 1.82502 2.13975 2.38815 2.81180 2.93172 3.01274 3.26453 3.61811 3.65610 4.03221 4.27946 4.49272 4.58559 4.70927 4.92987 4.94610 4.96156 5.03962 5.39979 5.51045 5.56449 5.58854 5.63503 5.84655 5.87671 6.05702 6.30448 6.43158 6.56881 6.71672 6.82646 7.12117 7.42171 7.85214 7.96053 8.26885 8.78070 9.61807 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.004470 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.410886 B = 6262.893237 C = 7202.984512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.121 6.121 3 C -0.215 4.215 4 C 0.175 3.825 5 F -0.116 7.116 6 C -0.161 4.161 7 C 0.064 3.936 8 C -0.089 4.089 9 C -0.169 4.169 10 C 0.034 3.966 11 C -0.416 4.416 12 H 0.104 0.896 13 C 0.084 3.916 14 N -0.780 5.780 15 Si 0.898 3.102 16 H -0.263 1.263 17 H -0.279 1.279 18 H -0.242 1.242 19 C 0.046 3.954 20 N -0.479 5.479 21 C 0.166 3.834 22 F -0.139 7.139 23 C -0.156 4.156 24 C 0.175 3.825 25 F -0.117 7.117 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.153 0.847 30 H 0.123 0.877 31 H 0.293 0.707 32 H 0.151 0.849 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.681 -10.927 2.672 13.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.110 5.890 3 C -0.328 4.328 4 C 0.152 3.848 5 F -0.094 7.094 6 C -0.181 4.181 7 C 0.063 3.937 8 C -0.093 4.093 9 C -0.194 4.194 10 C 0.028 3.972 11 C -0.444 4.444 12 H 0.122 0.878 13 C -0.139 4.139 14 N -0.402 5.402 15 Si 0.723 3.277 16 H -0.189 1.189 17 H -0.205 1.205 18 H -0.165 1.165 19 C -0.118 4.118 20 N -0.190 5.190 21 C 0.015 3.985 22 F -0.119 7.119 23 C -0.177 4.177 24 C 0.153 3.847 25 F -0.095 7.095 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.124 0.876 29 H 0.171 0.829 30 H 0.141 0.859 31 H 0.104 0.896 32 H 0.168 0.832 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.360 -11.421 3.035 13.420 hybrid contribution -0.188 -0.350 -0.139 0.421 sum -6.548 -11.771 2.896 13.777 Atomic orbital electron populations 1.23637 0.94939 1.06582 1.05488 1.85433 1.06536 0.99572 1.97425 1.21659 1.17618 0.99980 0.93514 1.17215 0.97357 0.89640 0.80570 1.91561 1.92459 1.80673 1.44747 1.21337 1.04583 0.92086 1.00131 1.18543 0.91102 0.92810 0.91256 1.18846 0.99243 0.89833 1.01351 1.21375 0.98794 0.96502 1.02718 1.18557 0.94986 0.91334 0.92279 1.19508 0.98910 1.01681 1.24281 0.87808 1.26211 0.95468 0.98699 0.93521 1.69665 1.11716 1.37388 1.21426 0.86466 0.78041 0.80449 0.82745 1.18853 1.20543 1.16491 1.22514 0.93974 0.99612 0.95744 1.66402 1.18134 1.12603 1.21822 1.17348 0.92341 0.88676 1.00143 1.91440 1.56984 1.88018 1.75429 1.21296 1.04209 0.92023 1.00122 1.17197 0.97332 0.89664 0.80551 1.91558 1.92412 1.80749 1.44763 0.90191 0.90197 0.87567 0.82947 0.85916 0.89575 0.83210 0.83195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 10.72 101.05 1.08 -0.27 16 2 S -0.12 -1.59 21.51 -107.50 -2.31 -3.90 16 3 C -0.21 -3.21 5.71 -38.89 -0.22 -3.43 16 4 C 0.17 2.65 7.27 -39.30 -0.29 2.37 16 5 F -0.12 -1.72 16.74 2.25 0.04 -1.68 16 6 C -0.16 -2.56 9.50 -39.21 -0.37 -2.94 16 7 C 0.06 1.12 5.33 -104.86 -0.56 0.56 16 8 C -0.09 -1.78 5.48 -104.75 -0.57 -2.36 16 9 C -0.17 -3.56 6.76 -38.26 -0.26 -3.82 16 10 C 0.03 0.74 5.11 -106.70 -0.55 0.20 16 11 C -0.42 -9.55 9.59 -37.77 -0.36 -9.91 16 12 H 0.10 2.44 8.06 -52.49 -0.42 2.02 16 13 C 0.08 1.90 5.42 -17.34 -0.09 1.81 16 14 N -0.78 -18.12 13.93 55.54 0.77 -17.35 16 15 Si 0.90 18.19 24.53 -169.99 -4.17 14.02 16 16 H -0.26 -5.18 6.70 56.52 0.38 -4.80 16 17 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.24 -5.06 6.86 56.52 0.39 -4.67 16 19 C 0.05 0.97 10.96 -16.72 -0.18 0.79 16 20 N -0.48 -10.48 10.33 -12.57 -0.13 -10.61 16 21 C 0.17 3.51 8.30 -16.71 -0.14 3.37 16 22 F -0.14 -2.81 15.92 2.25 0.04 -2.78 16 23 C -0.16 -2.52 8.84 -39.21 -0.35 -2.86 16 24 C 0.17 2.66 7.26 -39.31 -0.29 2.37 16 25 F -0.12 -1.71 16.74 2.25 0.04 -1.68 16 26 H 0.08 0.77 8.14 -51.92 -0.42 0.34 16 27 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 28 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.15 2.27 8.04 -52.49 -0.42 1.85 16 30 H 0.12 2.52 4.79 -52.49 -0.25 2.27 16 31 H 0.29 6.15 8.30 -40.82 -0.34 5.81 16 32 H 0.15 2.81 8.06 -52.49 -0.42 2.38 16 33 H 0.15 2.33 7.81 -52.48 -0.41 1.92 16 LS Contribution 316.09 15.07 4.76 4.76 Total: -1.00 -24.08 316.09 -6.48 -30.56 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -2.37 Total: 2.77 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -3.14 Total: -14.12 kcal Atomic # 7 Polarization: -28.60 SS G_CDS: 0.64 Total: -27.96 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 0.11 Total: -6.13 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -4.17 Total: 14.02 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.31 Total: -3.90 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -24.08 -6.48 -30.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243690162.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.571 kcal (2) G-P(sol) polarization free energy of solvation -24.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds