Wall clock time and date at job start Tue Mar 31 2020 15:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76203 * 103.00191 * 2 1 4 4 C 1.39175 * 119.96633 * 269.72875 * 3 2 1 5 5 F 1.35098 * 119.98336 * 359.97438 * 4 3 2 6 6 C 1.38054 * 120.02744 * 179.72207 * 4 3 2 7 7 C 1.39421 * 119.96784 * 0.56948 * 6 4 3 8 8 C 1.48327 * 120.03170 * 179.67751 * 7 6 4 9 9 C 1.39029 * 120.41947 * 310.02545 * 8 7 6 10 10 C 1.40949 * 118.12465 * 179.97438 * 9 8 7 11 11 C 1.41377 * 120.57148 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99785 * 150.44025 * 11 10 9 13 13 C 1.39893 * 119.99814 * 330.44603 * 11 10 9 14 14 N 1.30863 * 119.99734 * 161.73967 * 13 11 10 15 15 Si 1.86800 * 120.00018 * 341.74207 * 13 11 10 16 16 H 1.48490 * 109.47213 * 95.41199 * 15 13 11 17 17 H 1.48504 * 109.46828 * 215.41248 * 15 13 11 18 18 H 1.48502 * 109.47140 * 335.40661 * 15 13 11 19 19 C 1.40810 * 118.85733 * 0.02562 * 10 9 8 20 20 N 1.31510 * 120.70368 * 359.97291 * 19 10 9 21 21 C 1.32157 * 122.07926 * 359.77466 * 20 19 10 22 22 F 1.35097 * 119.46286 * 180.26730 * 21 20 19 23 23 C 1.39428 * 119.93984 * 359.70407 * 7 6 4 24 24 C 1.38048 * 119.96962 * 359.97438 * 23 7 6 25 25 F 1.35100 * 119.98238 * 179.97438 * 24 23 7 26 26 H 1.09000 * 109.47025 * 300.00399 * 1 2 3 27 27 H 1.08998 * 109.46609 * 59.99813 * 1 2 3 28 28 H 1.08997 * 109.47026 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.01248 * 180.27021 * 6 4 3 30 30 H 1.08002 * 120.93819 * 359.95164 * 9 8 7 31 31 H 0.96997 * 120.00467 * 179.97438 * 14 13 11 32 32 H 1.07994 * 119.64727 * 179.97438 * 19 10 9 33 33 H 1.08006 * 120.01291 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7169 0.0000 4 6 2.3724 2.3929 -1.2057 5 9 2.2261 1.7324 -2.3751 6 6 2.6774 3.7394 -1.2072 7 6 2.8348 4.4191 -0.0001 8 6 3.1695 5.8641 -0.0001 9 6 4.2228 6.3428 -0.7711 10 6 4.4981 7.7246 -0.7352 11 6 5.5574 8.2668 -1.4985 12 1 5.4976 9.2827 -1.8600 13 6 6.6830 7.4873 -1.7855 14 7 7.4851 7.8305 -2.7609 15 14 7.0411 5.9566 -0.7765 16 1 6.4890 4.7657 -1.4708 17 1 8.5094 5.8007 -0.6177 18 1 6.4097 6.0867 0.5613 19 6 3.7006 8.5557 0.0748 20 7 2.7148 8.0540 0.7862 21 6 2.4251 6.7647 0.7731 22 9 1.3971 6.3070 1.5206 23 6 2.6778 3.7392 1.2070 24 6 2.3664 2.3944 1.2055 25 9 2.2147 1.7352 2.3750 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.7987 4.2647 -2.1429 30 1 4.8136 5.6745 -1.3801 31 1 8.2658 7.2903 -2.9598 32 1 3.9006 9.6163 0.1122 33 1 2.7999 4.2646 2.1427 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243690162.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:20 Heat of formation + Delta-G solvation = -91.192659 kcal Electronic energy + Delta-G solvation = -24338.556171 eV Core-core repulsion = 20233.308799 eV Total energy + Delta-G solvation = -4105.247372 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.044 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.28902 -50.24434 -49.61126 -40.89817 -39.62108 -35.99093 -34.43129 -33.05354 -31.71937 -30.64276 -29.74178 -27.38325 -25.56700 -24.51996 -23.78267 -22.56440 -19.90661 -19.28714 -18.81420 -18.61208 -18.45925 -17.81731 -17.31806 -17.09291 -16.95905 -16.55194 -16.52292 -16.35761 -15.82167 -15.25808 -15.21511 -14.89348 -14.43862 -14.34933 -14.28314 -14.16086 -14.03248 -13.85956 -13.68000 -13.30327 -13.16279 -13.02535 -12.78766 -12.46231 -11.98476 -11.71963 -11.44908 -10.81517 -10.38398 -10.11812 -10.07572 -9.56037 -9.08771 -8.96549 -6.67640 -0.86815 -0.31162 0.20089 0.37220 0.46615 1.19550 1.30684 1.39790 1.41200 1.97604 2.01403 2.36344 2.42995 2.96823 3.04329 3.17017 3.25141 3.39730 3.76062 3.91499 4.18922 4.21301 4.22093 4.24424 4.30799 4.37043 4.45456 4.68876 4.75186 4.79232 4.95390 5.09993 5.16543 5.31897 5.46066 5.73160 6.08848 6.25809 6.53100 7.09155 7.96233 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.004470 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.410886 B = 6262.893237 C = 7202.984512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.140 6.140 3 C -0.208 4.208 4 C 0.174 3.826 5 F -0.113 7.113 6 C -0.156 4.156 7 C 0.042 3.958 8 C -0.079 4.079 9 C -0.175 4.175 10 C 0.029 3.971 11 C -0.439 4.439 12 H 0.087 0.913 13 C 0.062 3.938 14 N -0.812 5.812 15 Si 0.935 3.065 16 H -0.252 1.252 17 H -0.268 1.268 18 H -0.253 1.253 19 C 0.043 3.957 20 N -0.493 5.493 21 C 0.161 3.839 22 F -0.134 7.134 23 C -0.153 4.153 24 C 0.175 3.825 25 F -0.113 7.113 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.132 0.868 29 H 0.160 0.840 30 H 0.128 0.872 31 H 0.302 0.698 32 H 0.168 0.832 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.644 -13.009 3.130 15.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.090 5.910 3 C -0.321 4.321 4 C 0.152 3.848 5 F -0.091 7.091 6 C -0.176 4.176 7 C 0.041 3.959 8 C -0.083 4.083 9 C -0.199 4.199 10 C 0.023 3.977 11 C -0.467 4.467 12 H 0.105 0.895 13 C -0.159 4.159 14 N -0.435 5.435 15 Si 0.758 3.242 16 H -0.177 1.177 17 H -0.194 1.194 18 H -0.177 1.177 19 C -0.121 4.121 20 N -0.205 5.205 21 C 0.010 3.990 22 F -0.114 7.114 23 C -0.173 4.173 24 C 0.153 3.847 25 F -0.091 7.091 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.151 0.849 29 H 0.177 0.823 30 H 0.146 0.854 31 H 0.113 0.887 32 H 0.185 0.815 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.324 -13.497 3.488 15.747 hybrid contribution -0.063 0.194 -0.227 0.305 sum -7.387 -13.303 3.261 15.562 Atomic orbital electron populations 1.23744 0.91502 1.08485 1.05954 1.85520 1.10026 0.98015 1.97434 1.21847 1.16069 1.00972 0.93206 1.17141 0.97492 0.89378 0.80831 1.91572 1.92422 1.80522 1.44554 1.21369 1.03910 0.92449 0.99917 1.18388 0.93551 0.91617 0.92342 1.18925 0.98144 0.91213 0.99999 1.21479 0.99141 0.96228 1.03081 1.18648 0.94785 0.92059 0.92167 1.19480 1.00079 1.01334 1.25836 0.89531 1.26649 0.95084 1.00278 0.93844 1.69669 1.12626 1.38747 1.22473 0.85905 0.78444 0.78732 0.81125 1.17697 1.19409 1.17701 1.22792 0.93543 1.00475 0.95292 1.66436 1.18551 1.13201 1.22280 1.17603 0.92410 0.88818 1.00206 1.91448 1.56723 1.87922 1.75286 1.21293 1.03748 0.92467 0.99796 1.17105 0.97440 0.89338 0.80837 1.91569 1.92369 1.80582 1.44555 0.89732 0.89715 0.84938 0.82269 0.85436 0.88658 0.81496 0.82934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 10.72 113.37 1.22 -0.89 16 2 S -0.14 -3.34 21.51 -56.49 -1.21 -4.55 16 3 C -0.21 -5.75 5.71 22.72 0.13 -5.62 16 4 C 0.17 4.92 7.27 22.45 0.16 5.08 16 5 F -0.11 -3.07 16.74 44.97 0.75 -2.32 16 6 C -0.16 -4.70 9.50 22.51 0.21 -4.49 16 7 C 0.04 1.41 5.33 -20.02 -0.11 1.30 16 8 C -0.08 -3.08 5.48 -19.95 -0.11 -3.19 16 9 C -0.17 -7.21 6.76 23.12 0.16 -7.06 16 10 C 0.03 1.25 5.11 -21.21 -0.11 1.14 16 11 C -0.44 -20.48 9.59 23.44 0.22 -20.25 16 12 H 0.09 4.23 8.06 -2.91 -0.02 4.20 16 13 C 0.06 2.81 5.42 85.24 0.46 3.27 16 14 N -0.81 -37.97 13.93 21.82 0.30 -37.67 16 15 Si 0.94 36.58 24.53 68.60 1.68 38.27 16 16 H -0.25 -9.35 6.70 99.48 0.67 -8.68 16 17 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 18 H -0.25 -10.31 6.86 99.48 0.68 -9.63 16 19 C 0.04 1.79 10.96 85.37 0.94 2.73 16 20 N -0.49 -21.26 10.33 -193.70 -2.00 -23.26 16 21 C 0.16 6.65 8.30 85.10 0.71 7.35 16 22 F -0.13 -5.25 15.92 44.97 0.72 -4.54 16 23 C -0.15 -4.66 8.84 22.51 0.20 -4.46 16 24 C 0.18 4.96 7.26 22.45 0.16 5.13 16 25 F -0.11 -3.06 16.74 44.97 0.75 -2.31 16 26 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.16 4.50 8.04 -2.91 -0.02 4.47 16 30 H 0.13 5.11 4.79 -2.91 -0.01 5.10 16 31 H 0.30 12.66 8.30 -92.71 -0.77 11.89 16 32 H 0.17 6.23 8.06 -2.91 -0.02 6.21 16 33 H 0.15 4.51 7.81 -2.91 -0.02 4.49 16 Total: -1.00 -49.80 316.09 6.36 -43.45 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.12 Total: 12.90 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: 4.24 Total: -19.96 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -1.70 Total: -60.93 kcal Atomic # 9 Polarization: -11.39 SS G_CDS: 2.22 Total: -9.17 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 1.68 Total: 38.27 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -1.21 Total: -4.55 kcal Total: -49.80 6.36 -43.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243690162.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.747 kcal (2) G-P(sol) polarization free energy of solvation -49.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds