Wall clock time and date at job start Tue Mar 31 2020 15:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35531 * 116.99740 * 2 1 4 4 C 1.39110 * 120.49073 * 359.97438 * 3 2 1 5 5 C 1.38320 * 118.64646 * 179.97438 * 4 3 2 6 6 C 1.40080 * 119.56785 * 359.97438 * 5 4 3 7 7 C 1.48234 * 119.51933 * 179.97438 * 6 5 4 8 8 C 1.39431 * 120.10985 * 353.30459 * 7 6 5 9 9 C 1.38187 * 119.90534 * 179.97438 * 8 7 6 10 10 F 1.35103 * 119.93613 * 180.02562 * 9 8 7 11 11 C 1.38569 * 120.13191 * 0.02562 * 9 8 7 12 12 C 1.38463 * 120.22207 * 359.68187 * 11 9 8 13 13 F 1.35102 * 119.95084 * 180.30357 * 12 11 9 14 14 C 1.38373 * 120.09109 * 0.59593 * 12 11 9 15 15 Cl 1.73598 * 120.06136 * 179.69853 * 14 12 11 16 16 N 1.32185 * 120.96397 * 0.26251 * 6 5 4 17 17 C 1.33578 * 121.46095 * 359.47419 * 16 6 5 18 18 C 1.40995 * 119.83587 * 180.26650 * 17 16 6 19 19 H 1.07995 * 120.00217 * 141.72056 * 18 17 16 20 20 C 1.40029 * 119.99854 * 321.72505 * 18 17 16 21 21 N 1.30771 * 119.99865 * 154.97829 * 20 18 17 22 22 Si 1.86795 * 120.00086 * 334.97282 * 20 18 17 23 23 H 1.48498 * 109.47455 * 93.14948 * 22 20 18 24 24 H 1.48496 * 109.47223 * 213.15381 * 22 20 18 25 25 H 1.48501 * 109.47212 * 333.15020 * 22 20 18 26 26 H 1.09002 * 109.46928 * 300.00134 * 1 2 3 27 27 H 1.08999 * 109.46965 * 60.00262 * 1 2 3 28 28 H 1.09001 * 109.46876 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.67554 * 359.96032 * 4 3 2 30 30 H 1.07998 * 120.21409 * 179.97438 * 5 4 3 31 31 H 1.07997 * 120.04830 * 359.96021 * 8 7 6 32 32 H 1.07999 * 119.88807 * 179.97438 * 11 9 8 33 33 H 0.97000 * 119.99912 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 1.2966 2.3807 -0.0005 5 6 1.9638 3.5923 0.0000 6 6 3.3645 3.6101 0.0017 7 6 4.0785 4.9092 0.0017 8 6 3.3657 6.0990 -0.1405 9 6 4.0355 7.3077 -0.1394 10 9 3.3454 8.4611 -0.2766 11 6 5.4136 7.3392 0.0022 12 6 6.1261 6.1612 0.1499 13 9 7.4689 6.1986 0.2937 14 6 5.4654 4.9454 0.1443 15 17 6.3604 3.4685 0.3216 16 7 4.0589 2.4853 -0.0025 17 6 3.4556 1.2935 0.0020 18 6 4.2301 0.1153 0.0030 19 1 3.9147 -0.7377 0.5853 20 6 5.4083 0.0513 -0.7510 21 7 6.3597 -0.7778 -0.4082 22 14 5.6209 1.1500 -2.2466 23 1 6.3173 2.3996 -1.8480 24 1 6.4266 0.4399 -3.2721 25 1 4.2877 1.4843 -2.8089 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2171 2.3461 -0.0016 30 1 1.4085 4.5186 -0.0008 31 1 2.2917 6.0761 -0.2516 32 1 5.9331 8.2860 0.0022 33 1 7.1757 -0.8224 -0.9308 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243826644.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:30 Heat of formation + Delta-G solvation = -64.176563 kcal Electronic energy + Delta-G solvation = -24764.407776 eV Core-core repulsion = 20645.915414 eV Total energy + Delta-G solvation = -4118.492362 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.02677 -48.92670 -39.64540 -38.62030 -36.89417 -35.79882 -33.77397 -31.92074 -31.17256 -30.01229 -29.08039 -26.87765 -25.80613 -23.61273 -22.81180 -21.42557 -20.78641 -18.16673 -17.64554 -17.25362 -16.98353 -16.51360 -16.02651 -15.90043 -15.46878 -15.31337 -15.19182 -14.96246 -14.45562 -14.29401 -13.68258 -13.26793 -13.13768 -12.93713 -12.74020 -12.36046 -12.24522 -11.89880 -11.82432 -11.46095 -11.39674 -10.96667 -10.80272 -10.70456 -10.33000 -10.13943 -9.94117 -9.27241 -8.98553 -8.56870 -8.26647 -7.97819 -7.23051 -6.94437 -4.55214 0.70244 0.92348 2.28481 2.40380 2.60569 3.24272 3.32683 3.36779 3.47613 3.77804 4.08379 4.17497 4.30338 4.44995 4.51195 4.80410 4.95640 5.26105 5.46727 5.51077 5.57220 5.58965 5.65526 5.73879 5.79371 5.83274 5.92819 5.96969 6.28662 6.46334 6.63362 6.96528 7.02220 7.13527 7.40704 7.95308 8.24508 8.58603 8.65185 9.37810 10.04411 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.012795 B = 0.006152 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.754395 B = 4550.381611 C = 6268.929442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.298 6.298 3 C 0.019 3.981 4 C -0.157 4.157 5 C -0.231 4.231 6 C 0.133 3.867 7 C 0.049 3.951 8 C -0.148 4.148 9 C 0.125 3.875 10 F -0.132 7.132 11 C -0.191 4.191 12 C 0.129 3.871 13 F -0.123 7.123 14 C -0.072 4.072 15 Cl 0.019 6.981 16 N -0.490 5.490 17 C 0.245 3.755 18 C -0.421 4.421 19 H 0.102 0.898 20 C 0.113 3.887 21 N -0.792 5.792 22 Si 0.894 3.106 23 H -0.232 1.232 24 H -0.295 1.295 25 H -0.264 1.264 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.753 10.841 -0.428 11.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.209 6.209 3 C -0.030 4.030 4 C -0.181 4.181 5 C -0.254 4.254 6 C -0.005 4.005 7 C 0.047 3.953 8 C -0.168 4.168 9 C 0.105 3.895 10 F -0.111 7.111 11 C -0.211 4.211 12 C 0.108 3.892 13 F -0.101 7.101 14 C -0.101 4.101 15 Cl 0.049 6.951 16 N -0.208 5.208 17 C 0.116 3.884 18 C -0.452 4.452 19 H 0.120 0.880 20 C -0.110 4.110 21 N -0.416 5.416 22 Si 0.719 3.281 23 H -0.155 1.155 24 H -0.223 1.223 25 H -0.188 1.188 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.107 0.893 29 H 0.133 0.867 30 H 0.128 0.872 31 H 0.170 0.830 32 H 0.168 0.832 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.453 10.384 -0.403 10.950 hybrid contribution -0.957 0.687 -0.609 1.326 sum -4.410 11.070 -1.013 11.959 Atomic orbital electron populations 1.22877 0.81035 1.02594 1.00194 1.86049 1.18788 1.27184 1.88910 1.20595 0.93810 0.83554 1.05059 1.21027 0.98526 0.92336 1.06184 1.21010 0.93344 0.96936 1.14137 1.19120 0.89827 0.90492 1.01039 1.18261 0.89797 0.92697 0.94582 1.21205 1.01698 0.89498 1.04376 1.17035 0.88896 0.81682 1.01862 1.91516 1.79204 1.47167 1.93199 1.20858 0.93136 0.98476 1.08678 1.16915 0.77748 0.92131 1.02392 1.91543 1.28549 1.97131 1.92899 1.21319 0.93302 0.89239 1.06256 1.98497 1.72853 1.29060 1.94657 1.68908 1.36254 0.96298 1.19305 1.18145 0.86034 0.91530 0.92660 1.18998 1.03297 0.97753 1.25182 0.87981 1.25913 0.92969 0.93502 0.98596 1.69745 1.04363 1.31919 1.35547 0.86484 0.80127 0.81828 0.79668 1.15549 1.22269 1.18761 0.93807 0.93763 0.89315 0.86749 0.87201 0.83048 0.83160 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.83 101.05 0.99 1.42 16 2 O -0.30 -6.24 9.93 -18.29 -0.18 -6.42 16 3 C 0.02 0.43 6.74 -38.06 -0.26 0.18 16 4 C -0.16 -3.02 9.11 -39.23 -0.36 -3.37 16 5 C -0.23 -4.33 9.45 -38.86 -0.37 -4.70 16 6 C 0.13 2.77 6.71 -82.92 -0.56 2.22 16 7 C 0.05 0.88 5.87 -104.88 -0.62 0.26 16 8 C -0.15 -2.17 9.38 -39.16 -0.37 -2.53 16 9 C 0.12 1.68 7.29 -39.48 -0.29 1.39 16 10 F -0.13 -1.67 17.26 2.25 0.04 -1.64 16 11 C -0.19 -2.53 10.00 -39.38 -0.39 -2.92 16 12 C 0.13 2.03 7.27 -39.45 -0.29 1.75 16 13 F -0.12 -1.94 16.83 2.25 0.04 -1.90 16 14 C -0.07 -1.33 6.35 -39.07 -0.25 -1.58 16 15 Cl 0.02 0.41 22.45 -51.86 -1.16 -0.75 16 16 N -0.49 -11.64 4.55 -7.57 -0.03 -11.67 16 17 C 0.24 6.10 5.41 -84.86 -0.46 5.64 16 18 C -0.42 -11.23 9.07 -37.87 -0.34 -11.57 16 19 H 0.10 2.87 8.04 -52.49 -0.42 2.45 16 20 C 0.11 2.95 5.42 -17.33 -0.09 2.86 16 21 N -0.79 -20.84 13.92 55.55 0.77 -20.07 16 22 Si 0.89 21.13 25.81 -169.99 -4.39 16.74 16 23 H -0.23 -5.28 5.05 56.52 0.29 -5.00 16 24 H -0.30 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.26 -6.50 7.11 56.52 0.40 -6.10 16 26 H 0.04 0.58 7.69 -51.93 -0.40 0.18 16 27 H 0.04 0.59 7.69 -51.93 -0.40 0.19 16 28 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.11 1.82 6.43 -52.49 -0.34 1.48 16 30 H 0.11 1.68 6.22 -52.49 -0.33 1.36 16 31 H 0.15 1.91 6.21 -52.49 -0.33 1.59 16 32 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.29 6.88 8.29 -40.82 -0.34 6.54 16 LS Contribution 304.67 15.07 4.59 4.59 Total: -1.00 -27.69 304.67 -6.27 -33.97 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -2.31 Total: -1.88 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -3.64 Total: -10.97 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.74 Total: -31.74 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.18 Total: -6.42 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.08 Total: -3.54 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.39 Total: 16.74 kcal Atomic # 17 Polarization: 0.41 SS G_CDS: -1.16 Total: -0.75 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.69 -6.27 -33.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243826644.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.210 kcal (2) G-P(sol) polarization free energy of solvation -27.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds