Wall clock time and date at job start Tue Mar 31 2020 15:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35531 * 116.99740 * 2 1 4 4 C 1.39110 * 120.49073 * 359.97438 * 3 2 1 5 5 C 1.38320 * 118.64646 * 179.97438 * 4 3 2 6 6 C 1.40080 * 119.56785 * 359.97438 * 5 4 3 7 7 C 1.48234 * 119.51933 * 179.97438 * 6 5 4 8 8 C 1.39431 * 120.10985 * 353.30459 * 7 6 5 9 9 C 1.38187 * 119.90534 * 179.97438 * 8 7 6 10 10 F 1.35103 * 119.93613 * 180.02562 * 9 8 7 11 11 C 1.38569 * 120.13191 * 0.02562 * 9 8 7 12 12 C 1.38463 * 120.22207 * 359.68187 * 11 9 8 13 13 F 1.35102 * 119.95084 * 180.30357 * 12 11 9 14 14 C 1.38373 * 120.09109 * 0.59593 * 12 11 9 15 15 Cl 1.73598 * 120.06136 * 179.69853 * 14 12 11 16 16 N 1.32185 * 120.96397 * 0.26251 * 6 5 4 17 17 C 1.33578 * 121.46095 * 359.47419 * 16 6 5 18 18 C 1.40995 * 119.83587 * 180.26650 * 17 16 6 19 19 H 1.07995 * 120.00217 * 141.72056 * 18 17 16 20 20 C 1.40029 * 119.99854 * 321.72505 * 18 17 16 21 21 N 1.30771 * 119.99865 * 154.97829 * 20 18 17 22 22 Si 1.86795 * 120.00086 * 334.97282 * 20 18 17 23 23 H 1.48498 * 109.47455 * 93.14948 * 22 20 18 24 24 H 1.48496 * 109.47223 * 213.15381 * 22 20 18 25 25 H 1.48501 * 109.47212 * 333.15020 * 22 20 18 26 26 H 1.09002 * 109.46928 * 300.00134 * 1 2 3 27 27 H 1.08999 * 109.46965 * 60.00262 * 1 2 3 28 28 H 1.09001 * 109.46876 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.67554 * 359.96032 * 4 3 2 30 30 H 1.07998 * 120.21409 * 179.97438 * 5 4 3 31 31 H 1.07997 * 120.04830 * 359.96021 * 8 7 6 32 32 H 1.07999 * 119.88807 * 179.97438 * 11 9 8 33 33 H 0.97000 * 119.99912 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 1.2966 2.3807 -0.0005 5 6 1.9638 3.5923 0.0000 6 6 3.3645 3.6101 0.0017 7 6 4.0785 4.9092 0.0017 8 6 3.3657 6.0990 -0.1405 9 6 4.0355 7.3077 -0.1394 10 9 3.3454 8.4611 -0.2766 11 6 5.4136 7.3392 0.0022 12 6 6.1261 6.1612 0.1499 13 9 7.4689 6.1986 0.2937 14 6 5.4654 4.9454 0.1443 15 17 6.3604 3.4685 0.3216 16 7 4.0589 2.4853 -0.0025 17 6 3.4556 1.2935 0.0020 18 6 4.2301 0.1153 0.0030 19 1 3.9147 -0.7377 0.5853 20 6 5.4083 0.0513 -0.7510 21 7 6.3597 -0.7778 -0.4082 22 14 5.6209 1.1500 -2.2466 23 1 6.3173 2.3996 -1.8480 24 1 6.4266 0.4399 -3.2721 25 1 4.2877 1.4843 -2.8089 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2171 2.3461 -0.0016 30 1 1.4085 4.5186 -0.0008 31 1 2.2917 6.0761 -0.2516 32 1 5.9331 8.2860 0.0022 33 1 7.1757 -0.8224 -0.9308 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243826644.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:29 Heat of formation + Delta-G solvation = -79.497340 kcal Electronic energy + Delta-G solvation = -24765.072135 eV Core-core repulsion = 20645.915414 eV Total energy + Delta-G solvation = -4119.156721 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.15069 -50.06941 -41.19073 -39.96955 -38.42622 -37.25372 -35.56491 -33.42126 -32.75839 -31.28205 -30.55210 -28.21806 -27.44719 -24.94362 -24.16843 -22.97164 -22.26961 -19.73926 -19.10112 -18.69545 -18.33645 -17.75776 -17.33339 -17.20891 -17.02714 -16.60800 -16.42617 -16.40241 -15.95144 -15.44792 -15.14490 -14.86006 -14.71596 -14.51740 -14.12689 -13.86909 -13.66476 -13.36604 -13.14935 -13.02786 -12.82257 -12.57850 -12.29517 -12.10565 -12.08872 -11.72593 -11.65652 -10.93617 -10.33623 -10.21948 -9.63580 -9.61950 -8.85598 -8.81089 -6.45167 -0.57597 -0.28286 0.64014 0.85032 1.16458 1.41003 1.45366 1.46149 2.13239 2.27071 2.55285 2.66173 2.73081 3.10278 3.23665 3.52522 3.67226 3.78585 4.14268 4.19299 4.24014 4.39183 4.44727 4.48545 4.53785 4.59335 4.72403 4.75977 4.85803 4.97673 5.26173 5.39420 5.43708 5.52967 5.82935 6.21730 6.31078 6.76841 6.95215 7.66516 8.22550 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.012795 B = 0.006152 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.754395 B = 4550.381611 C = 6268.929442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.330 6.330 3 C 0.004 3.996 4 C -0.149 4.149 5 C -0.201 4.201 6 C 0.105 3.895 7 C 0.025 3.975 8 C -0.131 4.131 9 C 0.140 3.860 10 F -0.120 7.120 11 C -0.167 4.167 12 C 0.123 3.877 13 F -0.126 7.126 14 C -0.094 4.094 15 Cl -0.019 7.019 16 N -0.500 5.500 17 C 0.223 3.777 18 C -0.465 4.465 19 H 0.064 0.936 20 C 0.090 3.910 21 N -0.839 5.839 22 Si 0.934 3.066 23 H -0.223 1.223 24 H -0.289 1.289 25 H -0.280 1.280 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.110 0.890 29 H 0.158 0.842 30 H 0.159 0.841 31 H 0.179 0.821 32 H 0.186 0.814 33 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.619 15.297 -0.916 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C -0.045 4.045 4 C -0.173 4.173 5 C -0.223 4.223 6 C -0.032 4.032 7 C 0.024 3.976 8 C -0.150 4.150 9 C 0.120 3.880 10 F -0.098 7.098 11 C -0.186 4.186 12 C 0.103 3.897 13 F -0.104 7.104 14 C -0.123 4.123 15 Cl 0.010 6.990 16 N -0.216 5.216 17 C 0.092 3.908 18 C -0.498 4.498 19 H 0.082 0.918 20 C -0.128 4.128 21 N -0.466 5.466 22 Si 0.758 3.242 23 H -0.146 1.146 24 H -0.216 1.216 25 H -0.205 1.205 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.176 0.824 30 H 0.177 0.823 31 H 0.197 0.803 32 H 0.203 0.797 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.332 14.868 -0.889 16.184 hybrid contribution -0.412 -0.318 -0.379 0.644 sum -6.744 14.549 -1.268 16.086 Atomic orbital electron populations 1.23256 0.77749 1.04814 1.01751 1.86014 1.22248 1.27094 1.88905 1.20696 0.93424 0.85288 1.05111 1.21529 1.00637 0.91097 1.04052 1.21651 0.92759 0.98782 1.09066 1.19713 0.91328 0.90795 1.01348 1.18201 0.89680 0.92653 0.97103 1.21358 1.02802 0.88416 1.02468 1.16916 0.88819 0.81666 1.00588 1.91567 1.78923 1.46384 1.92913 1.21167 0.93175 0.98698 1.05591 1.16989 0.77787 0.92062 1.02886 1.91540 1.28795 1.97113 1.92980 1.21524 0.93746 0.88692 1.08328 1.98485 1.73792 1.31629 1.95084 1.68806 1.37627 0.96867 1.18329 1.18200 0.87595 0.91416 0.93554 1.18770 1.05222 0.98016 1.27781 0.91796 1.26277 0.92654 0.94191 0.99633 1.69777 1.05174 1.34577 1.37065 0.85913 0.79022 0.81340 0.77934 1.14605 1.21585 1.20534 0.92005 0.92025 0.87147 0.82442 0.82327 0.80336 0.79718 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.83 113.37 1.11 1.63 16 2 O -0.33 -13.90 9.93 -88.35 -0.88 -14.78 16 3 C 0.00 0.18 6.74 23.26 0.16 0.33 16 4 C -0.15 -5.17 9.11 22.50 0.21 -4.97 16 5 C -0.20 -6.63 9.45 22.74 0.21 -6.41 16 6 C 0.11 4.19 6.71 42.20 0.28 4.47 16 7 C 0.03 0.85 5.87 -20.03 -0.12 0.73 16 8 C -0.13 -3.16 9.38 22.55 0.21 -2.94 16 9 C 0.14 2.99 7.29 22.34 0.16 3.15 16 10 F -0.12 -2.29 17.26 44.97 0.78 -1.52 16 11 C -0.17 -3.62 10.00 22.40 0.22 -3.39 16 12 C 0.12 3.59 7.27 22.36 0.16 3.75 16 13 F -0.13 -3.78 16.83 44.97 0.76 -3.02 16 14 C -0.09 -3.35 6.35 22.60 0.14 -3.21 16 15 Cl -0.02 -0.84 22.45 -2.72 -0.06 -0.90 16 16 N -0.50 -23.98 4.55 -177.86 -0.81 -24.79 16 17 C 0.22 11.48 5.41 40.33 0.22 11.70 16 18 C -0.46 -26.75 9.07 23.38 0.21 -26.54 16 19 H 0.06 3.99 8.04 -2.91 -0.02 3.97 16 20 C 0.09 5.04 5.42 85.29 0.46 5.50 16 21 N -0.84 -47.65 13.92 21.84 0.30 -47.35 16 22 Si 0.93 45.60 25.81 68.60 1.77 47.37 16 23 H -0.22 -10.40 5.05 99.48 0.50 -9.90 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 25 H -0.28 -14.16 7.11 99.48 0.71 -13.45 16 26 H 0.06 1.43 7.69 -2.39 -0.02 1.41 16 27 H 0.06 1.44 7.69 -2.39 -0.02 1.42 16 28 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.16 4.08 6.43 -2.91 -0.02 4.06 16 30 H 0.16 3.68 6.22 -2.91 -0.02 3.66 16 31 H 0.18 3.25 6.21 -2.91 -0.02 3.23 16 32 H 0.19 2.77 8.06 -2.91 -0.02 2.75 16 33 H 0.29 15.00 8.29 -92.71 -0.77 14.23 16 Total: -1.00 -66.65 304.67 6.50 -60.15 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: 0.99 Total: 1.05 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 3.65 Total: -16.21 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -0.50 Total: -72.14 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.88 Total: -14.78 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 1.53 Total: -4.54 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.77 Total: 47.37 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.06 Total: -0.90 kcal Total: -66.65 6.50 -60.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243826644.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.350 kcal (2) G-P(sol) polarization free energy of solvation -66.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds