Wall clock time and date at job start Tue Mar 31 2020 15:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35534 * 116.99975 * 2 1 4 4 C 1.39131 * 120.47985 * 359.97438 * 3 2 1 5 5 C 1.38307 * 118.64176 * 179.97438 * 4 3 2 6 6 C 1.40115 * 119.57326 * 0.02562 * 5 4 3 7 7 C 1.48186 * 119.52493 * 179.97438 * 6 5 4 8 8 C 1.39458 * 120.11344 * 0.02562 * 7 6 5 9 9 C 1.38116 * 119.87708 * 179.97438 * 8 7 6 10 10 F 1.35105 * 119.93716 * 180.02562 * 9 8 7 11 11 C 1.38721 * 120.12640 * 0.02562 * 9 8 7 12 12 Cl 1.73600 * 119.87850 * 179.97438 * 11 9 8 13 13 C 1.38353 * 120.24223 * 359.97438 * 11 9 8 14 14 C 1.38245 * 120.11340 * 0.02562 * 13 11 9 15 15 F 1.35097 * 120.06025 * 180.02562 * 14 13 11 16 16 N 1.32204 * 120.95724 * 0.27236 * 6 5 4 17 17 C 1.33593 * 121.45193 * 359.43992 * 16 6 5 18 18 C 1.40990 * 119.83254 * 180.26191 * 17 16 6 19 19 H 1.07990 * 119.99886 * 180.29344 * 18 17 16 20 20 C 1.40019 * 119.99597 * 0.29363 * 18 17 16 21 21 N 1.30775 * 120.00443 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99836 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46905 * 60.00261 * 22 20 18 24 24 H 1.48500 * 109.47332 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47278 * 300.00112 * 22 20 18 26 26 H 1.08993 * 109.47448 * 300.00337 * 1 2 3 27 27 H 1.09002 * 109.47186 * 60.00520 * 1 2 3 28 28 H 1.09001 * 109.47251 * 180.02562 * 1 2 3 29 29 H 1.08004 * 120.68015 * 359.96295 * 4 3 2 30 30 H 1.07999 * 120.21331 * 180.02562 * 5 4 3 31 31 H 1.08001 * 120.06423 * 359.97438 * 8 7 6 32 32 H 1.07995 * 119.93919 * 180.27625 * 13 11 9 33 33 H 0.96999 * 120.00272 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.2963 2.3808 -0.0005 5 6 1.9634 3.5923 0.0000 6 6 3.3645 3.6103 0.0006 7 6 4.0781 4.9090 0.0006 8 6 3.3578 6.1032 0.0006 9 6 4.0280 7.3109 0.0012 10 9 3.3314 8.4685 0.0017 11 6 5.4149 7.3375 0.0012 12 17 6.2507 8.8591 0.0012 13 6 6.1346 6.1559 0.0012 14 6 5.4740 4.9415 0.0006 15 9 6.1778 3.7883 0.0011 16 7 4.0590 2.4854 -0.0048 17 6 3.4556 1.2936 0.0001 18 6 4.2299 0.1153 -0.0003 19 1 3.7449 -0.8495 -0.0011 20 6 5.6277 0.1964 0.0003 21 7 6.2151 1.3648 0.0007 22 14 6.6538 -1.3646 0.0004 23 1 6.3411 -2.1625 -1.2124 24 1 8.0956 -1.0093 0.0004 25 1 6.3402 -2.1630 1.2126 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.2168 2.3461 -0.0016 30 1 1.4080 4.5186 0.0000 31 1 2.2780 6.0837 0.0002 32 1 7.2142 6.1823 0.0057 33 1 7.1834 1.4209 0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244302410.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:46 Heat of formation + Delta-G solvation = -57.389513 kcal Electronic energy + Delta-G solvation = -24591.767818 eV Core-core repulsion = 20473.569764 eV Total energy + Delta-G solvation = -4118.198054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.78056 -47.80200 -39.25672 -38.44044 -36.87897 -36.27856 -33.82121 -31.62674 -30.63481 -29.91636 -28.64840 -26.66582 -25.63120 -23.52842 -22.59903 -21.24716 -20.55431 -17.84443 -17.48676 -16.98689 -16.92181 -16.39669 -15.67219 -15.65327 -14.92964 -14.87203 -14.58598 -14.55004 -14.11888 -13.98759 -13.38679 -13.05883 -12.88865 -12.61741 -12.52304 -12.47210 -12.17993 -11.70166 -11.33706 -11.31391 -11.06653 -11.00802 -10.93455 -10.71266 -10.52984 -10.43910 -9.95754 -9.52198 -8.89387 -8.34739 -8.19790 -7.86885 -7.07871 -6.48721 -4.49311 0.86238 1.22664 2.01402 2.58361 2.75829 3.07866 3.10369 3.12670 3.69013 3.92460 4.17010 4.29368 4.69128 4.69792 4.72312 5.00842 5.32515 5.58290 5.61113 5.62507 5.75381 5.79373 5.86836 5.89897 5.94064 6.09835 6.22035 6.35781 6.59565 6.73177 6.95529 7.16638 7.24006 7.35935 7.68095 8.06985 8.18548 8.60521 8.86409 9.81965 10.22727 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.004477 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.763300 B = 6252.003236 C = 8242.621438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C -0.018 4.018 4 C -0.149 4.149 5 C -0.265 4.265 6 C 0.138 3.862 7 C -0.015 4.015 8 C -0.111 4.111 9 C 0.083 3.917 10 F -0.132 7.132 11 C -0.054 4.054 12 Cl -0.057 7.057 13 C -0.141 4.141 14 C 0.141 3.859 15 F -0.062 7.062 16 N -0.441 5.441 17 C 0.250 3.750 18 C -0.406 4.406 19 H 0.092 0.908 20 C 0.064 3.936 21 N -0.697 5.697 22 Si 0.909 3.091 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.265 1.265 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.887 6.920 0.014 7.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.220 6.220 3 C -0.067 4.067 4 C -0.173 4.173 5 C -0.289 4.289 6 C -0.003 4.003 7 C -0.018 4.018 8 C -0.131 4.131 9 C 0.063 3.937 10 F -0.110 7.110 11 C -0.082 4.082 12 Cl -0.029 7.029 13 C -0.161 4.161 14 C 0.120 3.880 15 F -0.039 7.039 16 N -0.156 5.156 17 C 0.123 3.877 18 C -0.437 4.437 19 H 0.110 0.890 20 C -0.163 4.163 21 N -0.317 5.317 22 Si 0.733 3.267 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.189 1.189 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.125 0.875 30 H 0.119 0.881 31 H 0.170 0.830 32 H 0.167 0.833 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.602 6.946 0.008 6.972 hybrid contribution -0.794 -0.209 0.004 0.821 sum -1.397 6.737 0.011 6.881 Atomic orbital electron populations 1.22786 0.81465 1.02074 1.00050 1.85950 1.18519 1.27757 1.89776 1.20399 0.93696 0.83305 1.09296 1.20850 0.97920 0.92450 1.06037 1.20906 0.93659 0.96469 1.17913 1.19301 0.89538 0.91231 1.00271 1.18843 0.91289 0.92982 0.98636 1.21025 1.01382 0.88893 1.01783 1.17075 0.87527 0.82201 1.06874 1.91503 1.78776 1.46546 1.94195 1.20560 0.90440 0.88021 1.09193 1.98359 1.77916 1.29566 1.97016 1.20851 1.01266 0.89220 1.04715 1.17764 0.89247 0.82856 0.98138 1.91927 1.76820 1.43580 1.91560 1.69025 1.34320 0.95189 1.17086 1.18093 0.84981 0.91914 0.92752 1.19518 0.90674 0.92937 1.40554 0.89027 1.26091 0.98698 0.97357 0.94130 1.70147 1.10790 1.24144 1.26661 0.86359 0.78455 0.81953 0.79959 1.18940 1.20205 1.18934 0.94051 0.94048 0.89727 0.87516 0.88075 0.82967 0.83257 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.83 101.05 0.99 1.50 16 2 O -0.31 -6.66 9.61 -18.30 -0.18 -6.84 16 3 C -0.02 -0.42 6.74 -38.05 -0.26 -0.68 16 4 C -0.15 -3.15 9.11 -39.22 -0.36 -3.51 16 5 C -0.27 -5.57 9.46 -38.85 -0.37 -5.94 16 6 C 0.14 3.16 6.74 -82.92 -0.56 2.60 16 7 C -0.02 -0.30 5.88 -104.84 -0.62 -0.92 16 8 C -0.11 -1.82 9.39 -39.17 -0.37 -2.19 16 9 C 0.08 1.29 7.26 -39.45 -0.29 1.01 16 10 F -0.13 -1.97 16.82 2.25 0.04 -1.93 16 11 C -0.05 -0.82 6.33 -39.36 -0.25 -1.06 16 12 Cl -0.06 -0.76 28.60 -51.86 -1.48 -2.24 16 13 C -0.14 -2.21 9.79 -39.54 -0.39 -2.60 16 14 C 0.14 2.72 7.27 -39.06 -0.28 2.43 16 15 F -0.06 -1.37 12.74 2.25 0.03 -1.34 16 16 N -0.44 -11.43 6.07 -7.57 -0.05 -11.48 16 17 C 0.25 6.58 6.56 -84.86 -0.56 6.02 16 18 C -0.41 -10.53 8.94 -37.87 -0.34 -10.86 16 19 H 0.09 2.30 7.31 -52.49 -0.38 1.92 16 20 C 0.06 1.55 5.50 -17.33 -0.10 1.46 16 21 N -0.70 -17.39 8.91 55.55 0.49 -16.90 16 22 Si 0.91 18.12 29.56 -169.99 -5.02 13.10 16 23 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 24 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 25 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 26 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 27 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.11 1.91 6.43 -52.48 -0.34 1.58 16 30 H 0.10 1.80 6.16 -52.49 -0.32 1.47 16 31 H 0.15 2.22 6.16 -52.49 -0.32 1.90 16 32 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 33 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 LS Contribution 308.35 15.07 4.65 4.65 Total: -1.00 -27.50 308.35 -7.40 -34.89 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -2.15 Total: 0.82 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -3.73 Total: -12.73 kcal Atomic # 7 Polarization: -28.83 SS G_CDS: 0.45 Total: -28.38 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.18 Total: -6.84 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.07 Total: -3.27 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.02 Total: 13.10 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.48 Total: -2.24 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.50 -7.40 -34.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244302410.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.497 kcal (2) G-P(sol) polarization free energy of solvation -27.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds