Wall clock time and date at job start Tue Mar 31 2020 15:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35542 * 116.99164 * 2 1 4 4 C 1.39128 * 120.48379 * 359.97438 * 3 2 1 5 5 C 1.38303 * 118.64515 * 180.02562 * 4 3 2 6 6 C 1.40141 * 119.56946 * 359.97438 * 5 4 3 7 7 C 1.48155 * 119.52202 * 179.97438 * 6 5 4 8 8 C 1.39676 * 120.15160 * 226.95397 * 7 6 5 9 9 F 1.35095 * 120.07007 * 359.95842 * 8 7 6 10 10 C 1.38209 * 119.86085 * 179.97438 * 8 7 6 11 11 C 1.38334 * 120.17036 * 359.97438 * 10 8 7 12 12 C 1.38382 * 120.30711 * 359.97438 * 11 10 8 13 13 Cl 1.73597 * 119.93044 * 180.02562 * 12 11 10 14 14 C 1.38362 * 120.13435 * 359.79348 * 12 11 10 15 15 F 1.35110 * 120.08359 * 180.23391 * 14 12 11 16 16 N 1.32210 * 120.95295 * 359.74337 * 6 5 4 17 17 C 1.33592 * 121.45404 * 0.52450 * 16 6 5 18 18 C 1.40981 * 119.83323 * 179.75752 * 17 16 6 19 19 H 1.08003 * 120.00076 * 190.35267 * 18 17 16 20 20 C 1.40014 * 119.99889 * 10.34310 * 18 17 16 21 21 N 1.30778 * 120.00426 * 194.00880 * 20 18 17 22 22 Si 1.86804 * 119.99883 * 14.01365 * 20 18 17 23 23 H 1.48500 * 109.47050 * 275.17749 * 22 20 18 24 24 H 1.48491 * 109.47309 * 35.17879 * 22 20 18 25 25 H 1.48503 * 109.47089 * 155.18233 * 22 20 18 26 26 H 1.08993 * 109.47393 * 60.00177 * 1 2 3 27 27 H 1.09002 * 109.46502 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47348 * 299.99291 * 1 2 3 29 29 H 1.07992 * 120.67975 * 359.97438 * 4 3 2 30 30 H 1.08001 * 120.21488 * 180.02562 * 5 4 3 31 31 H 1.07991 * 119.91629 * 180.02562 * 10 8 7 32 32 H 1.07995 * 119.84796 * 180.02562 * 11 10 8 33 33 H 0.96991 * 120.00462 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2078 0.0000 4 6 1.2962 2.3808 -0.0005 5 6 1.9631 3.5924 -0.0011 6 6 3.3644 3.6105 -0.0005 7 6 4.0777 4.9090 -0.0016 8 6 5.1384 5.1260 -0.8841 9 9 5.5178 4.1513 -1.7392 10 6 5.7994 6.3398 -0.8804 11 6 5.4125 7.3394 -0.0058 12 6 4.3619 7.1323 0.8707 13 17 3.8843 8.3937 1.9636 14 6 3.6883 5.9238 0.8745 15 9 2.6596 5.7244 1.7274 16 7 4.0589 2.4856 0.0056 17 6 3.4555 1.2937 0.0010 18 6 4.2298 0.1156 0.0026 19 1 3.7583 -0.8408 -0.1691 20 6 5.6102 0.1854 0.2266 21 7 6.3687 -0.8465 -0.0382 22 14 6.3684 1.7525 0.9040 23 1 6.6420 2.6927 -0.2124 24 1 5.4267 2.3836 1.8631 25 1 7.6393 1.4269 1.5997 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 0.2168 2.3461 -0.0014 30 1 1.4076 4.5186 -0.0011 31 1 6.6193 6.5087 -1.5626 32 1 5.9324 8.2860 -0.0076 33 1 7.3248 -0.7983 0.1173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245721326.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:50 Heat of formation + Delta-G solvation = -81.254584 kcal Electronic energy + Delta-G solvation = -25040.597745 eV Core-core repulsion = 20921.364824 eV Total energy + Delta-G solvation = -4119.232921 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.86536 -48.62275 -39.47048 -38.71815 -37.10203 -36.48996 -33.89494 -31.98263 -31.13799 -30.15339 -29.09440 -26.85714 -25.80940 -23.51433 -22.79868 -21.63183 -20.84089 -18.11288 -17.83843 -17.28427 -16.99000 -16.75123 -15.99519 -15.73099 -15.47813 -15.16688 -15.00305 -14.90705 -14.30589 -14.25754 -13.47351 -13.18526 -13.09972 -12.91954 -12.75488 -12.61585 -12.34616 -12.02862 -11.86097 -11.46400 -11.25892 -11.14663 -10.89013 -10.77692 -10.71564 -10.42532 -10.02170 -9.33659 -9.00740 -8.64448 -8.58960 -7.99192 -7.41794 -6.98890 -4.64583 0.75497 0.83735 1.86540 2.32451 2.42526 3.24045 3.41350 3.49587 3.57158 3.85384 4.11895 4.30595 4.37223 4.41220 4.50639 4.78440 4.85794 5.33177 5.42377 5.53940 5.63212 5.64247 5.68521 5.76503 5.85523 5.91180 5.94113 5.94581 6.33742 6.41149 6.60426 6.89786 7.07251 7.17960 7.45701 7.94989 8.14049 8.48023 8.58965 9.32584 9.93666 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.013382 B = 0.005564 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.824880 B = 5031.584060 C = 6341.511327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.303 6.303 3 C 0.004 3.996 4 C -0.143 4.143 5 C -0.247 4.247 6 C 0.160 3.840 7 C -0.075 4.075 8 C 0.161 3.839 9 F -0.105 7.105 10 C -0.161 4.161 11 C -0.060 4.060 12 C -0.093 4.093 13 Cl -0.051 7.051 14 C 0.151 3.849 15 F -0.111 7.111 16 N -0.533 5.533 17 C 0.241 3.759 18 C -0.386 4.386 19 H 0.106 0.894 20 C 0.086 3.914 21 N -0.788 5.788 22 Si 0.982 3.018 23 H -0.261 1.261 24 H -0.268 1.268 25 H -0.328 1.328 26 H 0.043 0.957 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.103 13.674 -0.060 14.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.215 6.215 3 C -0.045 4.045 4 C -0.166 4.166 5 C -0.271 4.271 6 C 0.022 3.978 7 C -0.078 4.078 8 C 0.140 3.860 9 F -0.083 7.083 10 C -0.180 4.180 11 C -0.079 4.079 12 C -0.120 4.120 13 Cl -0.022 7.022 14 C 0.130 3.870 15 F -0.089 7.089 16 N -0.253 5.253 17 C 0.116 3.884 18 C -0.417 4.417 19 H 0.123 0.877 20 C -0.138 4.138 21 N -0.410 5.410 22 Si 0.816 3.184 23 H -0.187 1.187 24 H -0.194 1.194 25 H -0.260 1.260 26 H 0.062 0.938 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.132 0.868 30 H 0.125 0.875 31 H 0.169 0.831 32 H 0.169 0.831 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.051 13.316 -0.008 13.473 hybrid contribution -1.057 0.554 0.355 1.245 sum -3.108 13.870 0.346 14.218 Atomic orbital electron populations 1.22842 0.80943 1.02469 1.00207 1.85991 1.18900 1.27186 1.89409 1.20006 0.92995 0.83629 1.07873 1.20909 0.98338 0.92107 1.05252 1.20761 0.92634 0.96995 1.16755 1.18626 0.89917 0.89273 0.99954 1.18751 0.97538 0.94314 0.97228 1.17522 0.93205 0.85948 0.89309 1.91635 1.89385 1.60757 1.66518 1.21084 1.02578 0.91915 1.02431 1.20711 0.94394 0.99821 0.92949 1.20763 1.01136 0.90348 0.99797 1.98370 1.91440 1.50148 1.62269 1.17003 0.87576 0.91983 0.90437 1.91572 1.54917 1.95135 1.67250 1.66883 1.36511 0.96924 1.25010 1.17951 0.86710 0.90768 0.92974 1.19442 0.91738 0.93630 1.36918 0.87656 1.26377 0.97135 0.99140 0.91186 1.69639 1.07496 1.31849 1.32035 0.84830 0.74037 0.79580 0.79964 1.18673 1.19361 1.26039 0.93834 0.89388 0.93802 0.86786 0.87498 0.83081 0.83132 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.83 101.05 0.99 1.48 16 2 O -0.30 -6.63 9.64 -18.32 -0.18 -6.81 16 3 C 0.00 0.09 6.74 -38.05 -0.26 -0.16 16 4 C -0.14 -2.99 9.11 -39.23 -0.36 -3.35 16 5 C -0.25 -5.24 8.84 -38.84 -0.34 -5.58 16 6 C 0.16 3.66 6.01 -82.92 -0.50 3.16 16 7 C -0.08 -1.47 5.62 -104.78 -0.59 -2.06 16 8 C 0.16 2.87 7.23 -39.06 -0.28 2.59 16 9 F -0.11 -2.15 15.22 2.25 0.03 -2.12 16 10 C -0.16 -2.10 10.01 -39.56 -0.40 -2.49 16 11 C -0.06 -0.69 9.82 -39.49 -0.39 -1.08 16 12 C -0.09 -1.29 6.32 -39.48 -0.25 -1.54 16 13 Cl -0.05 -0.63 28.61 -51.86 -1.48 -2.11 16 14 C 0.15 2.59 7.09 -39.03 -0.28 2.32 16 15 F -0.11 -1.98 15.16 2.25 0.03 -1.94 16 16 N -0.53 -13.64 4.42 -7.57 -0.03 -13.68 16 17 C 0.24 6.36 6.27 -84.86 -0.53 5.83 16 18 C -0.39 -10.68 9.44 -37.88 -0.36 -11.03 16 19 H 0.11 3.01 7.57 -52.48 -0.40 2.61 16 20 C 0.09 2.31 5.52 -17.33 -0.10 2.22 16 21 N -0.79 -21.08 13.92 55.55 0.77 -20.31 16 22 Si 0.98 24.33 25.37 -169.99 -4.31 20.01 16 23 H -0.26 -6.38 5.94 56.52 0.34 -6.05 16 24 H -0.27 -6.96 6.75 56.52 0.38 -6.57 16 25 H -0.33 -7.85 7.11 56.52 0.40 -7.45 16 26 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 27 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.04 0.63 7.69 -51.93 -0.40 0.23 16 29 H 0.11 2.00 6.43 -52.49 -0.34 1.66 16 30 H 0.11 2.02 7.48 -52.49 -0.39 1.63 16 31 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.29 7.07 8.29 -40.82 -0.34 6.73 16 LS Contribution 309.40 15.07 4.66 4.66 Total: -1.00 -29.87 309.40 -6.55 -36.42 By element: Atomic # 1 Polarization: -2.02 SS G_CDS: -2.41 Total: -4.44 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -3.63 Total: -9.69 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.74 Total: -33.99 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.18 Total: -6.81 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.07 Total: -4.06 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -4.31 Total: 20.01 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.48 Total: -2.11 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.87 -6.55 -36.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245721326.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.835 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds