Wall clock time and date at job start Tue Mar 31 2020 15:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35542 * 116.99164 * 2 1 4 4 C 1.39128 * 120.48379 * 359.97438 * 3 2 1 5 5 C 1.38303 * 118.64515 * 180.02562 * 4 3 2 6 6 C 1.40141 * 119.56946 * 359.97438 * 5 4 3 7 7 C 1.48155 * 119.52202 * 179.97438 * 6 5 4 8 8 C 1.39676 * 120.15160 * 226.95397 * 7 6 5 9 9 F 1.35095 * 120.07007 * 359.95842 * 8 7 6 10 10 C 1.38209 * 119.86085 * 179.97438 * 8 7 6 11 11 C 1.38334 * 120.17036 * 359.97438 * 10 8 7 12 12 C 1.38382 * 120.30711 * 359.97438 * 11 10 8 13 13 Cl 1.73597 * 119.93044 * 180.02562 * 12 11 10 14 14 C 1.38362 * 120.13435 * 359.79348 * 12 11 10 15 15 F 1.35110 * 120.08359 * 180.23391 * 14 12 11 16 16 N 1.32210 * 120.95295 * 359.74337 * 6 5 4 17 17 C 1.33592 * 121.45404 * 0.52450 * 16 6 5 18 18 C 1.40981 * 119.83323 * 179.75752 * 17 16 6 19 19 H 1.08003 * 120.00076 * 190.35267 * 18 17 16 20 20 C 1.40014 * 119.99889 * 10.34310 * 18 17 16 21 21 N 1.30778 * 120.00426 * 194.00880 * 20 18 17 22 22 Si 1.86804 * 119.99883 * 14.01365 * 20 18 17 23 23 H 1.48500 * 109.47050 * 275.17749 * 22 20 18 24 24 H 1.48491 * 109.47309 * 35.17879 * 22 20 18 25 25 H 1.48503 * 109.47089 * 155.18233 * 22 20 18 26 26 H 1.08993 * 109.47393 * 60.00177 * 1 2 3 27 27 H 1.09002 * 109.46502 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47348 * 299.99291 * 1 2 3 29 29 H 1.07992 * 120.67975 * 359.97438 * 4 3 2 30 30 H 1.08001 * 120.21488 * 180.02562 * 5 4 3 31 31 H 1.07991 * 119.91629 * 180.02562 * 10 8 7 32 32 H 1.07995 * 119.84796 * 180.02562 * 11 10 8 33 33 H 0.96991 * 120.00462 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2078 0.0000 4 6 1.2962 2.3808 -0.0005 5 6 1.9631 3.5924 -0.0011 6 6 3.3644 3.6105 -0.0005 7 6 4.0777 4.9090 -0.0016 8 6 5.1384 5.1260 -0.8841 9 9 5.5178 4.1513 -1.7392 10 6 5.7994 6.3398 -0.8804 11 6 5.4125 7.3394 -0.0058 12 6 4.3619 7.1323 0.8707 13 17 3.8843 8.3937 1.9636 14 6 3.6883 5.9238 0.8745 15 9 2.6596 5.7244 1.7274 16 7 4.0589 2.4856 0.0056 17 6 3.4555 1.2937 0.0010 18 6 4.2298 0.1156 0.0026 19 1 3.7583 -0.8408 -0.1691 20 6 5.6102 0.1854 0.2266 21 7 6.3687 -0.8465 -0.0382 22 14 6.3684 1.7525 0.9040 23 1 6.6420 2.6927 -0.2124 24 1 5.4267 2.3836 1.8631 25 1 7.6393 1.4269 1.5997 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 0.2168 2.3461 -0.0014 30 1 1.4076 4.5186 -0.0011 31 1 6.6193 6.5087 -1.5626 32 1 5.9324 8.2860 -0.0076 33 1 7.3248 -0.7983 0.1173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245721326.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:49 Heat of formation + Delta-G solvation = -98.597937 kcal Electronic energy + Delta-G solvation = -25041.349809 eV Core-core repulsion = 20921.364824 eV Total energy + Delta-G solvation = -4119.984985 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.17906 -50.02944 -41.15646 -39.97855 -38.69427 -37.59042 -35.78993 -33.52701 -32.88757 -31.33548 -30.65184 -28.31454 -27.53912 -24.88642 -24.12882 -23.32630 -22.42000 -19.77497 -19.34394 -18.83266 -18.42130 -18.16359 -17.45826 -17.17148 -16.84861 -16.77665 -16.49116 -16.44563 -15.86872 -15.49015 -15.09021 -14.75286 -14.60348 -14.50254 -14.24860 -13.98069 -13.77955 -13.54907 -13.35575 -13.00566 -12.69720 -12.60782 -12.45996 -12.38463 -12.10589 -11.98186 -11.77941 -11.30524 -10.45298 -10.35697 -9.84324 -9.76878 -9.15670 -8.96865 -6.62547 -0.48995 -0.34175 0.52532 0.65262 0.83338 1.38581 1.50888 1.57376 2.07031 2.35146 2.48602 2.64843 2.66689 3.11106 3.20020 3.41355 3.65342 3.74433 4.01470 4.11212 4.17936 4.41944 4.43822 4.54665 4.61616 4.66354 4.68724 4.70922 4.78670 4.85317 5.04779 5.25216 5.36552 5.48304 5.73257 6.05530 6.14455 6.51609 6.84182 7.45831 8.02210 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.013382 B = 0.005564 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.824880 B = 5031.584060 C = 6341.511327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.331 6.331 3 C -0.010 4.010 4 C -0.134 4.134 5 C -0.231 4.231 6 C 0.137 3.863 7 C -0.112 4.112 8 C 0.131 3.869 9 F -0.131 7.131 10 C -0.138 4.138 11 C -0.032 4.032 12 C -0.087 4.087 13 Cl -0.031 7.031 14 C 0.138 3.862 15 F -0.122 7.122 16 N -0.547 5.547 17 C 0.221 3.779 18 C -0.430 4.430 19 H 0.077 0.923 20 C 0.060 3.940 21 N -0.823 5.823 22 Si 1.029 2.971 23 H -0.259 1.259 24 H -0.291 1.291 25 H -0.317 1.317 26 H 0.059 0.941 27 H 0.114 0.886 28 H 0.059 0.941 29 H 0.155 0.845 30 H 0.135 0.865 31 H 0.190 0.810 32 H 0.202 0.798 33 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.752 17.782 0.038 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.244 6.244 3 C -0.059 4.059 4 C -0.157 4.157 5 C -0.254 4.254 6 C 0.000 4.000 7 C -0.114 4.114 8 C 0.110 3.890 9 F -0.109 7.109 10 C -0.157 4.157 11 C -0.050 4.050 12 C -0.115 4.115 13 Cl -0.002 7.002 14 C 0.116 3.884 15 F -0.100 7.100 16 N -0.267 5.267 17 C 0.094 3.906 18 C -0.462 4.462 19 H 0.095 0.905 20 C -0.160 4.160 21 N -0.448 5.448 22 Si 0.862 3.138 23 H -0.185 1.185 24 H -0.218 1.218 25 H -0.249 1.249 26 H 0.078 0.922 27 H 0.132 0.868 28 H 0.077 0.923 29 H 0.173 0.827 30 H 0.153 0.847 31 H 0.207 0.793 32 H 0.219 0.781 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.714 17.440 0.086 17.651 hybrid contribution -1.134 -0.417 0.342 1.256 sum -3.848 17.023 0.428 17.458 Atomic orbital electron populations 1.23234 0.77620 1.04882 1.01614 1.85958 1.22359 1.26708 1.89394 1.20062 0.92524 0.85239 1.08086 1.21363 1.00335 0.90900 1.03151 1.21264 0.92527 0.98263 1.13339 1.19273 0.91192 0.90011 0.99485 1.18743 0.99353 0.93553 0.99792 1.18003 0.94069 0.87277 0.89626 1.91569 1.89719 1.62202 1.67405 1.21518 1.02097 0.89746 1.02342 1.21309 0.92549 1.00943 0.90218 1.20951 1.00869 0.89629 1.00062 1.98388 1.91373 1.48778 1.61688 1.17132 0.88061 0.92784 0.90383 1.91534 1.55524 1.95339 1.67585 1.66783 1.37716 0.97494 1.24703 1.18150 0.88407 0.90828 0.93208 1.19280 0.92501 0.93287 1.41179 0.90496 1.26790 0.97203 1.00688 0.91305 1.69641 1.08043 1.32807 1.34355 0.84154 0.73250 0.77487 0.78863 1.18495 1.21843 1.24915 0.92205 0.86776 0.92258 0.82714 0.84682 0.79318 0.78142 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.83 113.37 1.11 1.74 16 2 O -0.33 -14.74 9.64 -88.47 -0.85 -15.60 16 3 C -0.01 -0.50 6.74 23.26 0.16 -0.34 16 4 C -0.13 -5.40 9.11 22.50 0.21 -5.19 16 5 C -0.23 -9.45 8.84 22.75 0.20 -9.25 16 6 C 0.14 6.28 6.01 42.19 0.25 6.53 16 7 C -0.11 -4.25 5.62 -19.97 -0.11 -4.36 16 8 C 0.13 4.48 7.23 22.61 0.16 4.64 16 9 F -0.13 -5.37 15.22 44.97 0.68 -4.69 16 10 C -0.14 -3.03 10.01 22.29 0.22 -2.81 16 11 C -0.03 -0.57 9.82 22.33 0.22 -0.35 16 12 C -0.09 -2.09 6.32 22.33 0.14 -1.95 16 13 Cl -0.03 -0.64 28.61 -2.72 -0.08 -0.72 16 14 C 0.14 4.43 7.09 22.63 0.16 4.59 16 15 F -0.12 -4.14 15.16 44.97 0.68 -3.46 16 16 N -0.55 -28.77 4.42 -177.88 -0.79 -29.56 16 17 C 0.22 12.17 6.27 40.33 0.25 12.42 16 18 C -0.43 -25.45 9.44 23.37 0.22 -25.23 16 19 H 0.08 4.80 7.57 -2.91 -0.02 4.78 16 20 C 0.06 3.42 5.52 85.28 0.47 3.89 16 21 N -0.82 -46.58 13.92 21.84 0.30 -46.28 16 22 Si 1.03 52.23 25.37 68.60 1.74 53.97 16 23 H -0.26 -12.88 5.94 99.48 0.59 -12.28 16 24 H -0.29 -15.62 6.75 99.48 0.67 -14.95 16 25 H -0.32 -15.12 7.11 99.48 0.71 -14.41 16 26 H 0.06 1.56 7.69 -2.39 -0.02 1.54 16 27 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 28 H 0.06 1.55 7.69 -2.39 -0.02 1.54 16 29 H 0.16 4.88 6.43 -2.91 -0.02 4.86 16 30 H 0.14 4.73 7.48 -2.91 -0.02 4.70 16 31 H 0.19 2.71 8.06 -2.91 -0.02 2.68 16 32 H 0.20 1.65 8.06 -2.91 -0.02 1.62 16 33 H 0.30 15.22 8.29 -92.71 -0.77 14.45 16 Total: -1.00 -71.18 309.40 6.40 -64.78 By element: Atomic # 1 Polarization: -3.81 SS G_CDS: 1.03 Total: -2.77 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 3.67 Total: -15.67 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -0.48 Total: -75.84 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.85 Total: -15.60 kcal Atomic # 9 Polarization: -9.51 SS G_CDS: 1.37 Total: -8.15 kcal Atomic # 14 Polarization: 52.23 SS G_CDS: 1.74 Total: 53.97 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -71.18 6.40 -64.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245721326.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.818 kcal (2) G-P(sol) polarization free energy of solvation -71.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds