Wall clock time and date at job start Tue Mar 31 2020 15:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35959 * 117.00040 * 2 1 4 4 C 1.38304 * 119.94558 * 359.97438 * 3 2 1 5 5 C 1.39699 * 119.87542 * 180.02562 * 4 3 2 6 6 C 1.47704 * 120.11976 * 180.02562 * 5 4 3 7 7 N 1.32627 * 119.99390 * 130.18766 * 6 5 4 8 8 C 1.31734 * 121.71253 * 179.70785 * 7 6 5 9 9 C 1.38875 * 121.51440 * 0.57018 * 8 7 6 10 10 C 1.36882 * 119.80724 * 359.72118 * 9 8 7 11 11 C 1.41127 * 118.39930 * 359.97438 * 10 9 8 12 12 C 1.40853 * 120.72037 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00122 * 149.04588 * 12 11 10 14 14 C 1.40054 * 119.99754 * 329.04266 * 12 11 10 15 15 N 1.30783 * 120.00276 * 348.71228 * 14 12 11 16 16 Si 1.86800 * 119.99705 * 168.71414 * 14 12 11 17 17 H 1.48506 * 109.47360 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47368 * 119.99662 * 16 14 12 19 19 H 1.48506 * 109.47038 * 239.99974 * 16 14 12 20 20 C 1.39907 * 119.75429 * 359.72343 * 5 4 3 21 21 F 1.35095 * 120.05889 * 180.27619 * 20 5 4 22 22 C 1.38372 * 119.88023 * 0.54784 * 20 5 4 23 23 F 1.35109 * 119.92985 * 179.72875 * 22 20 5 24 24 C 1.38561 * 120.13023 * 359.45284 * 22 20 5 25 25 Cl 1.73603 * 119.87789 * 180.25301 * 24 22 20 26 26 H 1.08995 * 109.47440 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47123 * 300.00492 * 1 2 3 28 28 H 1.08996 * 109.46976 * 60.00200 * 1 2 3 29 29 H 1.08007 * 120.06560 * 0.02562 * 4 3 2 30 30 H 1.08004 * 119.24200 * 180.29451 * 8 7 6 31 31 H 1.07991 * 120.09796 * 179.69806 * 9 8 7 32 32 H 1.07999 * 120.80143 * 179.97438 * 10 9 8 33 33 H 0.96997 * 119.99685 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2919 2.3706 -0.0005 5 6 1.9277 3.6145 -0.0011 6 6 1.1273 4.8560 -0.0011 7 7 1.3914 5.8151 0.8761 8 6 0.7030 6.9379 0.9026 9 6 -0.3432 7.1690 0.0191 10 6 -0.6728 6.2182 -0.9089 11 6 0.0726 5.0202 -0.9362 12 6 -0.2242 4.0092 -1.8710 13 1 0.5627 3.3702 -2.2434 14 6 -1.5399 3.8328 -2.3175 15 7 -2.5235 4.4477 -1.7136 16 14 -1.8897 2.7191 -3.7758 17 1 -0.6151 2.1461 -4.2783 18 1 -2.7944 1.6199 -3.3534 19 1 -2.5377 3.5062 -4.8556 20 6 3.3252 3.6801 0.0048 21 9 3.9463 4.8797 0.0099 22 6 4.0700 2.5139 -0.0004 23 9 5.4197 2.5760 -0.0003 24 6 3.4344 1.2827 0.0001 25 17 4.3753 -0.1763 0.0002 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2133 2.3143 -0.0005 30 1 0.9553 7.6944 1.6310 31 1 -0.8955 8.0959 0.0642 32 1 -1.4837 6.3810 -1.6034 33 1 -3.4347 4.3252 -2.0226 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245855362.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:08 Heat of formation + Delta-G solvation = -83.102289 kcal Electronic energy + Delta-G solvation = -25118.519959 eV Core-core repulsion = 20999.206916 eV Total energy + Delta-G solvation = -4119.313043 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.03469 -47.97959 -39.93548 -38.60586 -36.86600 -36.13926 -34.37774 -31.90554 -30.86923 -29.37950 -28.95204 -27.11260 -25.84424 -23.47495 -22.32242 -21.54417 -20.82322 -18.17892 -17.59436 -17.37096 -17.08095 -16.19951 -16.06559 -15.73059 -15.38696 -15.28152 -14.86758 -14.63778 -14.36316 -14.10015 -13.80819 -13.27396 -12.78656 -12.71199 -12.61896 -12.49946 -12.08446 -11.80110 -11.65463 -11.56813 -11.33918 -11.30982 -11.04086 -10.77964 -10.75584 -10.43580 -10.05040 -9.66855 -8.76497 -8.32919 -8.30522 -8.00644 -7.58481 -7.12547 -4.80427 1.03397 1.31038 2.20740 2.35173 2.67560 2.85807 2.91255 2.95849 3.17537 3.62601 3.65355 4.21010 4.34274 4.78723 4.88938 5.12442 5.20865 5.29280 5.38429 5.43477 5.62225 5.70127 5.86490 6.04539 6.16026 6.32143 6.44035 6.61802 6.67290 6.80520 6.84036 6.93915 7.34319 7.46243 7.55329 7.64911 8.11110 8.34309 8.40385 9.31301 9.77033 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.011282 B = 0.006257 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.214394 B = 4474.199124 C = 6234.956030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.303 6.303 3 C 0.150 3.850 4 C -0.156 4.156 5 C 0.072 3.928 6 C -0.006 4.006 7 N -0.441 5.441 8 C -0.020 4.020 9 C -0.144 4.144 10 C -0.120 4.120 11 C 0.096 3.904 12 C -0.444 4.444 13 H 0.088 0.912 14 C 0.076 3.924 15 N -0.784 5.784 16 Si 0.905 3.095 17 H -0.254 1.254 18 H -0.269 1.269 19 H -0.267 1.267 20 C 0.048 3.952 21 F -0.117 7.117 22 C 0.104 3.896 23 F -0.120 7.120 24 C -0.104 4.104 25 Cl -0.045 7.045 26 H 0.101 0.899 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.162 0.838 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.128 0.872 33 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.586 -6.211 0.518 6.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.216 6.216 3 C 0.103 3.897 4 C -0.175 4.175 5 C 0.069 3.931 6 C -0.142 4.142 7 N -0.148 5.148 8 C -0.183 4.183 9 C -0.164 4.164 10 C -0.146 4.146 11 C 0.091 3.909 12 C -0.472 4.472 13 H 0.106 0.894 14 C -0.145 4.145 15 N -0.408 5.408 16 Si 0.728 3.272 17 H -0.178 1.178 18 H -0.194 1.194 19 H -0.192 1.192 20 C 0.027 3.973 21 F -0.095 7.095 22 C 0.083 3.917 23 F -0.098 7.098 24 C -0.132 4.132 25 Cl -0.017 7.017 26 H 0.119 0.881 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.179 0.821 30 H 0.144 0.856 31 H 0.122 0.878 32 H 0.145 0.855 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.226 -6.601 1.102 7.053 hybrid contribution -0.848 0.056 -1.249 1.511 sum 1.378 -6.545 -0.147 6.690 Atomic orbital electron populations 1.23186 0.77518 1.03938 1.02605 1.86091 1.21898 1.25246 1.88362 1.18128 0.89212 0.85531 0.96839 1.21398 1.01772 0.89107 1.05252 1.18209 0.88843 0.93459 0.92555 1.19074 1.02538 0.93425 0.99197 1.67042 1.26157 1.00530 1.21039 1.21742 0.97863 0.95801 1.02857 1.21515 0.98156 0.99253 0.97495 1.21403 1.01367 0.92300 0.99528 1.18266 0.89562 0.92563 0.90477 1.19622 0.94030 1.13853 1.19737 0.89376 1.25985 0.95800 0.95956 0.96710 1.69735 1.01183 1.34742 1.35129 0.86269 0.80005 0.80034 0.80903 1.17774 1.19381 1.19229 1.17469 0.90201 0.79575 1.10060 1.91513 1.82083 1.41852 1.94058 1.16729 0.77390 0.91238 1.06355 1.91519 1.27415 1.96953 1.93948 1.19591 0.89495 0.86953 1.17208 1.98338 1.71861 1.34170 1.97283 0.88109 0.92079 0.91635 0.82061 0.85640 0.87842 0.85466 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 101.05 0.99 1.27 16 2 O -0.30 -4.65 9.94 -19.61 -0.19 -4.84 16 3 C 0.15 2.58 6.67 -39.28 -0.26 2.32 16 4 C -0.16 -2.91 7.06 -39.01 -0.28 -3.19 16 5 C 0.07 1.52 5.09 -104.86 -0.53 0.98 16 6 C -0.01 -0.14 6.13 -82.25 -0.50 -0.65 16 7 N -0.44 -10.40 9.80 -9.18 -0.09 -10.49 16 8 C -0.02 -0.43 11.16 -17.36 -0.19 -0.62 16 9 C -0.14 -3.03 10.03 -39.84 -0.40 -3.43 16 10 C -0.12 -2.77 8.70 -38.98 -0.34 -3.10 16 11 C 0.10 2.28 5.52 -106.41 -0.59 1.69 16 12 C -0.44 -10.03 6.94 -37.91 -0.26 -10.30 16 13 H 0.09 1.97 6.86 -52.49 -0.36 1.61 16 14 C 0.08 1.61 5.25 -17.32 -0.09 1.51 16 15 N -0.78 -17.24 11.06 55.55 0.61 -16.63 16 16 Si 0.90 16.08 29.57 -169.99 -5.03 11.06 16 17 H -0.25 -4.58 7.11 56.52 0.40 -4.18 16 18 H -0.27 -4.61 7.11 56.52 0.40 -4.21 16 19 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 20 C 0.05 1.00 7.26 -38.91 -0.28 0.72 16 21 F -0.12 -2.55 16.36 2.25 0.04 -2.52 16 22 C 0.10 1.94 7.27 -39.41 -0.29 1.66 16 23 F -0.12 -2.17 16.73 2.25 0.04 -2.14 16 24 C -0.10 -1.82 6.34 -39.18 -0.25 -2.07 16 25 Cl -0.05 -0.70 28.13 -51.86 -1.46 -2.16 16 26 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.72 7.66 -51.93 -0.40 0.32 16 28 H 0.07 0.83 7.65 -51.93 -0.40 0.44 16 29 H 0.16 2.98 5.48 -52.48 -0.29 2.69 16 30 H 0.13 2.34 8.06 -52.48 -0.42 1.92 16 31 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.13 2.95 6.51 -52.49 -0.34 2.61 16 33 H 0.29 5.72 8.29 -40.82 -0.34 5.38 16 LS Contribution 312.87 15.07 4.71 4.71 Total: -1.00 -25.25 312.87 -6.83 -32.07 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -2.19 Total: 4.14 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -3.27 Total: -13.20 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.52 Total: -27.12 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.19 Total: -4.84 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.07 Total: -4.65 kcal Atomic # 14 Polarization: 16.08 SS G_CDS: -5.03 Total: 11.06 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.46 Total: -2.16 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -25.25 -6.83 -32.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245855362.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.027 kcal (2) G-P(sol) polarization free energy of solvation -25.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds