Wall clock time and date at job start Tue Mar 31 2020 15:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35959 * 117.00040 * 2 1 4 4 C 1.38304 * 119.94558 * 359.97438 * 3 2 1 5 5 C 1.39699 * 119.87542 * 180.02562 * 4 3 2 6 6 C 1.47704 * 120.11976 * 180.02562 * 5 4 3 7 7 N 1.32627 * 119.99390 * 130.18766 * 6 5 4 8 8 C 1.31734 * 121.71253 * 179.70785 * 7 6 5 9 9 C 1.38875 * 121.51440 * 0.57018 * 8 7 6 10 10 C 1.36882 * 119.80724 * 359.72118 * 9 8 7 11 11 C 1.41127 * 118.39930 * 359.97438 * 10 9 8 12 12 C 1.40853 * 120.72037 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00122 * 149.04588 * 12 11 10 14 14 C 1.40054 * 119.99754 * 329.04266 * 12 11 10 15 15 N 1.30783 * 120.00276 * 348.71228 * 14 12 11 16 16 Si 1.86800 * 119.99705 * 168.71414 * 14 12 11 17 17 H 1.48506 * 109.47360 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47368 * 119.99662 * 16 14 12 19 19 H 1.48506 * 109.47038 * 239.99974 * 16 14 12 20 20 C 1.39907 * 119.75429 * 359.72343 * 5 4 3 21 21 F 1.35095 * 120.05889 * 180.27619 * 20 5 4 22 22 C 1.38372 * 119.88023 * 0.54784 * 20 5 4 23 23 F 1.35109 * 119.92985 * 179.72875 * 22 20 5 24 24 C 1.38561 * 120.13023 * 359.45284 * 22 20 5 25 25 Cl 1.73603 * 119.87789 * 180.25301 * 24 22 20 26 26 H 1.08995 * 109.47440 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47123 * 300.00492 * 1 2 3 28 28 H 1.08996 * 109.46976 * 60.00200 * 1 2 3 29 29 H 1.08007 * 120.06560 * 0.02562 * 4 3 2 30 30 H 1.08004 * 119.24200 * 180.29451 * 8 7 6 31 31 H 1.07991 * 120.09796 * 179.69806 * 9 8 7 32 32 H 1.07999 * 120.80143 * 179.97438 * 10 9 8 33 33 H 0.96997 * 119.99685 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2919 2.3706 -0.0005 5 6 1.9277 3.6145 -0.0011 6 6 1.1273 4.8560 -0.0011 7 7 1.3914 5.8151 0.8761 8 6 0.7030 6.9379 0.9026 9 6 -0.3432 7.1690 0.0191 10 6 -0.6728 6.2182 -0.9089 11 6 0.0726 5.0202 -0.9362 12 6 -0.2242 4.0092 -1.8710 13 1 0.5627 3.3702 -2.2434 14 6 -1.5399 3.8328 -2.3175 15 7 -2.5235 4.4477 -1.7136 16 14 -1.8897 2.7191 -3.7758 17 1 -0.6151 2.1461 -4.2783 18 1 -2.7944 1.6199 -3.3534 19 1 -2.5377 3.5062 -4.8556 20 6 3.3252 3.6801 0.0048 21 9 3.9463 4.8797 0.0099 22 6 4.0700 2.5139 -0.0004 23 9 5.4197 2.5760 -0.0003 24 6 3.4344 1.2827 0.0001 25 17 4.3753 -0.1763 0.0002 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2133 2.3143 -0.0005 30 1 0.9553 7.6944 1.6310 31 1 -0.8955 8.0959 0.0642 32 1 -1.4837 6.3810 -1.6034 33 1 -3.4347 4.3252 -2.0226 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245855362.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:08 Heat of formation + Delta-G solvation = -94.585267 kcal Electronic energy + Delta-G solvation = -25119.017898 eV Core-core repulsion = 20999.206916 eV Total energy + Delta-G solvation = -4119.810983 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.55328 -49.56483 -41.33638 -40.21890 -38.23124 -37.52002 -36.04202 -33.47001 -32.57493 -30.81055 -30.50303 -28.34112 -27.45027 -25.04285 -23.85662 -23.13381 -22.41749 -19.63735 -19.24854 -18.83213 -18.59589 -17.70991 -17.50564 -17.28597 -16.84959 -16.63130 -16.32688 -16.15669 -15.96165 -15.64548 -15.35193 -14.73098 -14.37519 -14.13491 -14.05899 -13.89715 -13.70442 -13.28946 -13.26155 -13.04918 -12.81872 -12.57314 -12.40575 -12.20335 -12.08019 -11.84828 -11.64808 -11.25526 -10.36745 -10.04297 -9.94736 -9.53689 -9.15725 -8.74405 -6.51658 -0.46582 -0.18389 0.71535 0.82088 1.01333 1.40560 1.47745 1.53289 1.90370 2.14203 2.15529 2.66835 2.77031 3.28926 3.37924 3.58477 3.67348 3.87357 4.11235 4.23533 4.40732 4.45459 4.48969 4.56016 4.75592 4.77302 4.82809 4.96584 5.10984 5.16210 5.23407 5.36954 5.75777 5.83484 5.95473 6.06129 6.40558 6.65322 6.70967 7.60011 8.18338 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.011282 B = 0.006257 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.214394 B = 4474.199124 C = 6234.956030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.301 6.301 3 C 0.164 3.836 4 C -0.152 4.152 5 C 0.053 3.947 6 C -0.023 4.023 7 N -0.463 5.463 8 C -0.031 4.031 9 C -0.140 4.140 10 C -0.141 4.141 11 C 0.072 3.928 12 C -0.457 4.457 13 H 0.084 0.916 14 C 0.048 3.952 15 N -0.807 5.807 16 Si 0.966 3.034 17 H -0.258 1.258 18 H -0.253 1.253 19 H -0.267 1.267 20 C 0.028 3.972 21 F -0.131 7.131 22 C 0.109 3.891 23 F -0.117 7.117 24 C -0.102 4.102 25 Cl -0.022 7.022 26 H 0.138 0.862 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.162 0.838 30 H 0.153 0.847 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.013 -7.903 0.163 7.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.214 6.214 3 C 0.117 3.883 4 C -0.171 4.171 5 C 0.050 3.950 6 C -0.160 4.160 7 N -0.170 5.170 8 C -0.193 4.193 9 C -0.160 4.160 10 C -0.168 4.168 11 C 0.067 3.933 12 C -0.485 4.485 13 H 0.102 0.898 14 C -0.170 4.170 15 N -0.431 5.431 16 Si 0.786 3.214 17 H -0.182 1.182 18 H -0.177 1.177 19 H -0.191 1.191 20 C 0.007 3.993 21 F -0.109 7.109 22 C 0.088 3.912 23 F -0.095 7.095 24 C -0.131 4.131 25 Cl 0.007 6.993 26 H 0.156 0.844 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.179 0.821 30 H 0.171 0.829 31 H 0.153 0.847 32 H 0.138 0.862 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.649 -8.296 0.763 8.492 hybrid contribution -0.684 0.521 -1.093 1.391 sum 0.965 -7.775 -0.330 7.841 Atomic orbital electron populations 1.23518 0.75627 1.06385 1.02572 1.86116 1.23725 1.23848 1.87674 1.18075 0.89156 0.85813 0.95303 1.21337 1.01796 0.88850 1.05165 1.18266 0.89062 0.93608 0.94029 1.19404 1.03037 0.94284 0.99231 1.67087 1.26980 1.01357 1.21616 1.22272 0.97696 0.95932 1.03445 1.21802 0.97878 0.99943 0.96371 1.21472 1.01799 0.92981 1.00505 1.18578 0.90201 0.93332 0.91144 1.19685 0.94715 1.13963 1.20172 0.89828 1.26631 0.95006 0.96921 0.98453 1.69760 1.01842 1.35455 1.36071 0.85357 0.79720 0.78624 0.77656 1.18178 1.17730 1.19150 1.17597 0.90324 0.79701 1.11697 1.91462 1.82271 1.42820 1.94383 1.16653 0.77415 0.91079 1.06035 1.91522 1.27148 1.96956 1.93898 1.19646 0.89918 0.87408 1.16143 1.98347 1.71295 1.32586 1.97106 0.84449 0.91710 0.92101 0.82101 0.82931 0.84700 0.86156 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.81 113.37 1.11 1.40 16 2 O -0.30 -8.53 9.94 -93.09 -0.93 -9.45 16 3 C 0.16 5.46 6.67 22.47 0.15 5.61 16 4 C -0.15 -5.66 7.06 22.64 0.16 -5.50 16 5 C 0.05 2.27 5.09 -20.02 -0.10 2.17 16 6 C -0.02 -1.13 6.13 42.44 0.26 -0.87 16 7 N -0.46 -22.23 9.80 -182.96 -1.79 -24.02 16 8 C -0.03 -1.34 11.16 84.86 0.95 -0.39 16 9 C -0.14 -5.87 10.03 22.10 0.22 -5.64 16 10 C -0.14 -6.62 8.70 22.66 0.20 -6.42 16 11 C 0.07 3.50 5.52 -21.02 -0.12 3.39 16 12 C -0.46 -20.92 6.94 23.35 0.16 -20.76 16 13 H 0.08 3.80 6.86 -2.91 -0.02 3.78 16 14 C 0.05 2.03 5.25 85.29 0.45 2.48 16 15 N -0.81 -35.32 11.06 21.85 0.24 -35.08 16 16 Si 0.97 31.98 29.57 68.60 2.03 34.01 16 17 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 18 H -0.25 -7.72 7.11 99.48 0.71 -7.01 16 19 H -0.27 -8.77 7.11 99.48 0.71 -8.07 16 20 C 0.03 1.18 7.26 22.71 0.16 1.34 16 21 F -0.13 -5.89 16.36 44.97 0.74 -5.15 16 22 C 0.11 4.04 7.27 22.38 0.16 4.21 16 23 F -0.12 -4.16 16.73 44.97 0.75 -3.41 16 24 C -0.10 -3.45 6.34 22.53 0.14 -3.31 16 25 Cl -0.02 -0.65 28.13 -2.72 -0.08 -0.72 16 26 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.06 1.40 7.66 -2.39 -0.02 1.38 16 28 H 0.06 1.42 7.65 -2.39 -0.02 1.41 16 29 H 0.16 5.96 5.48 -2.91 -0.02 5.94 16 30 H 0.15 5.53 8.06 -2.91 -0.02 5.51 16 31 H 0.14 4.65 8.06 -2.92 -0.02 4.62 16 32 H 0.12 5.68 6.51 -2.91 -0.02 5.67 16 33 H 0.30 11.59 8.29 -92.71 -0.77 10.82 16 Total: -1.00 -54.11 312.87 6.07 -48.04 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 1.19 Total: 18.11 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: 3.91 Total: -22.32 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -1.55 Total: -59.11 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.93 Total: -9.45 kcal Atomic # 9 Polarization: -10.04 SS G_CDS: 1.49 Total: -8.56 kcal Atomic # 14 Polarization: 31.98 SS G_CDS: 2.03 Total: 34.01 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.72 kcal Total: -54.11 6.07 -48.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245855362.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.548 kcal (2) G-P(sol) polarization free energy of solvation -54.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds