Wall clock time and date at job start Tue Mar 31 2020 15:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35970 * 116.99905 * 2 1 4 4 C 1.38450 * 119.96145 * 359.97438 * 3 2 1 5 5 C 1.39335 * 119.90050 * 180.02562 * 4 3 2 6 6 C 1.48333 * 120.08795 * 179.97438 * 5 4 3 7 7 C 1.40067 * 120.82293 * 309.99744 * 6 5 4 8 8 C 1.38480 * 119.42232 * 180.02562 * 7 6 5 9 9 N 1.31498 * 121.14796 * 0.02562 * 8 7 6 10 10 C 1.33647 * 121.79810 * 359.97438 * 9 8 7 11 11 C 1.41426 * 119.77696 * 179.97438 * 10 9 8 12 12 H 1.08007 * 120.00398 * 187.07679 * 11 10 9 13 13 C 1.40028 * 120.00304 * 7.07178 * 11 10 9 14 14 N 1.30742 * 120.00582 * 182.55912 * 13 11 10 15 15 Si 1.86808 * 119.99789 * 2.56433 * 13 11 10 16 16 H 1.48499 * 109.47070 * 179.97438 * 15 13 11 17 17 H 1.48495 * 109.46833 * 299.99945 * 15 13 11 18 18 H 1.48501 * 109.46996 * 59.99803 * 15 13 11 19 19 C 1.39342 * 120.82636 * 130.27705 * 6 5 4 20 20 C 1.39525 * 119.82275 * 0.25076 * 5 4 3 21 21 F 1.35106 * 120.03927 * 179.74874 * 20 5 4 22 22 C 1.38442 * 119.92166 * 359.49592 * 20 5 4 23 23 F 1.35105 * 119.95199 * 180.22568 * 22 20 5 24 24 C 1.38513 * 120.09815 * 0.50917 * 22 20 5 25 25 Cl 1.73593 * 119.91067 * 179.76302 * 24 22 20 26 26 H 1.08991 * 109.46770 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47094 * 300.00621 * 1 2 3 28 28 H 1.09002 * 109.46931 * 60.00443 * 1 2 3 29 29 H 1.07995 * 120.04945 * 0.04630 * 4 3 2 30 30 H 1.08005 * 120.28747 * 359.97438 * 7 6 5 31 31 H 1.07997 * 119.42902 * 180.02562 * 8 7 6 32 32 H 0.96999 * 119.99739 * 354.85849 * 14 13 11 33 33 H 1.08006 * 120.57909 * 359.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2915 2.3721 -0.0005 5 6 1.9253 3.6129 -0.0011 6 6 1.1207 4.8590 -0.0022 7 6 0.0823 5.0420 -0.9242 8 6 -0.6501 6.2170 -0.8997 9 7 -0.3873 7.1642 -0.0263 10 6 0.5923 7.0395 0.8743 11 6 0.8383 8.0856 1.7938 12 1 1.6978 8.0402 2.4462 13 6 -0.0325 9.1803 1.8584 14 7 0.2219 10.1709 2.6728 15 14 -1.5580 9.2251 0.7810 16 1 -2.3078 10.4811 1.0368 17 1 -1.1567 9.1697 -0.6476 18 1 -2.4223 8.0599 1.0980 19 6 1.3828 5.8791 0.9101 20 6 3.3190 3.6802 -0.0064 21 9 3.9381 4.8810 -0.0120 22 6 4.0666 2.5150 -0.0005 23 9 5.4161 2.5795 -0.0010 24 6 3.4331 1.2832 -0.0001 25 17 4.3754 -0.1747 0.0011 26 1 -0.3632 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.2130 2.3158 -0.0002 30 1 -0.1447 4.2736 -1.6485 31 1 -1.4511 6.3580 -1.6103 32 1 0.9718 10.1147 3.2854 33 1 2.1777 5.7777 1.6343 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245855934.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:32 Heat of formation + Delta-G solvation = -88.512833 kcal Electronic energy + Delta-G solvation = -24303.783680 eV Core-core repulsion = 20184.236017 eV Total energy + Delta-G solvation = -4119.547662 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.50245 -48.49463 -40.45247 -38.86285 -37.43578 -36.65795 -34.02593 -32.74628 -30.61569 -29.94248 -29.55142 -27.47634 -25.69813 -24.03809 -22.77769 -21.76809 -20.89707 -18.94419 -18.12096 -17.75305 -17.59788 -16.63188 -16.50352 -15.89177 -15.79064 -15.33378 -15.19097 -14.93633 -14.78945 -14.24329 -14.02909 -13.53224 -13.20752 -13.09940 -12.86269 -12.80267 -12.47387 -12.30886 -12.21781 -11.80833 -11.44111 -11.22626 -11.17575 -10.82599 -10.66120 -10.23143 -9.73085 -9.43227 -9.28510 -8.66013 -8.21395 -8.15236 -7.83460 -7.37323 -4.93986 0.47940 0.74329 1.76034 2.20888 2.37522 2.67724 3.09414 3.54360 3.58174 3.72215 3.95693 4.24716 4.34330 4.38337 4.47483 4.51923 4.69863 4.89252 4.90277 5.08662 5.23386 5.32785 5.44475 5.55572 5.63684 5.82214 6.01699 6.24065 6.30806 6.33977 6.73940 6.82156 7.00440 7.12874 7.31918 7.41134 7.92033 8.09782 8.47102 9.29544 9.87413 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.020299 B = 0.003641 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.022467 B = 7689.108134 C = 8627.033488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.299 6.299 3 C 0.158 3.842 4 C -0.170 4.170 5 C 0.022 3.978 6 C -0.002 4.002 7 C -0.299 4.299 8 C 0.156 3.844 9 N -0.570 5.570 10 C 0.248 3.752 11 C -0.464 4.464 12 H 0.084 0.916 13 C 0.042 3.958 14 N -0.796 5.796 15 Si 1.155 2.845 16 H -0.331 1.331 17 H -0.278 1.278 18 H -0.292 1.292 19 C -0.221 4.221 20 C 0.053 3.947 21 F -0.112 7.112 22 C 0.115 3.885 23 F -0.112 7.112 24 C -0.097 4.097 25 Cl -0.032 7.032 26 H 0.106 0.894 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.157 0.843 30 H 0.108 0.892 31 H 0.133 0.867 32 H 0.285 0.715 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.219 -18.065 -4.990 18.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.212 6.212 3 C 0.111 3.889 4 C -0.189 4.189 5 C 0.021 3.979 6 C -0.008 4.008 7 C -0.322 4.322 8 C -0.005 4.005 9 N -0.289 5.289 10 C 0.125 3.875 11 C -0.495 4.495 12 H 0.102 0.898 13 C -0.180 4.180 14 N -0.417 5.417 15 Si 0.990 3.010 16 H -0.265 1.265 17 H -0.205 1.205 18 H -0.221 1.221 19 C -0.243 4.243 20 C 0.032 3.968 21 F -0.090 7.090 22 C 0.094 3.906 23 F -0.090 7.090 24 C -0.125 4.125 25 Cl -0.003 7.003 26 H 0.124 0.876 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.174 0.826 30 H 0.126 0.874 31 H 0.150 0.850 32 H 0.096 0.904 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.150 -16.602 -5.261 17.416 hybrid contribution 2.398 -1.593 0.592 2.939 sum 2.247 -18.194 -4.669 18.918 Atomic orbital electron populations 1.23233 0.77218 1.04574 1.02261 1.86156 1.22151 1.24895 1.87978 1.18149 0.89364 0.85548 0.95849 1.21237 1.01263 0.89306 1.07108 1.18790 0.89948 0.94582 0.94613 1.18373 0.94903 0.90747 0.96789 1.21055 1.03555 1.01598 1.06027 1.22051 0.95588 0.88679 0.94213 1.66564 1.22444 1.30595 1.09328 1.18553 0.87514 0.91476 0.89923 1.20870 1.09928 1.02900 1.15789 0.89836 1.27905 1.03426 0.89739 0.96942 1.70647 1.27224 1.29430 1.14430 0.81811 0.71223 0.72249 0.75724 1.26462 1.20543 1.22060 1.21739 1.04595 0.95038 1.02956 1.17345 0.90013 0.80014 1.09469 1.91590 1.82182 1.41302 1.93920 1.16774 0.77799 0.91111 1.04964 1.91569 1.26949 1.96874 1.93620 1.19684 0.89760 0.87618 1.15481 1.98373 1.71436 1.33388 1.97070 0.87613 0.91872 0.91885 0.82567 0.87420 0.84976 0.90402 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.15 16 2 O -0.30 -3.25 9.94 -19.64 -0.20 -3.44 16 3 C 0.16 1.99 6.67 -39.27 -0.26 1.73 16 4 C -0.17 -2.23 8.53 -39.10 -0.33 -2.56 16 5 C 0.02 0.36 5.52 -104.86 -0.58 -0.22 16 6 C 0.00 -0.05 5.33 -104.65 -0.56 -0.60 16 7 C -0.30 -5.53 9.66 -38.81 -0.37 -5.91 16 8 C 0.16 3.15 11.17 -17.61 -0.20 2.96 16 9 N -0.57 -13.74 4.54 -11.21 -0.05 -13.79 16 10 C 0.25 6.20 6.39 -85.03 -0.54 5.66 16 11 C -0.46 -12.26 9.58 -37.70 -0.36 -12.62 16 12 H 0.08 2.21 8.05 -52.48 -0.42 1.79 16 13 C 0.04 1.11 5.52 -17.34 -0.10 1.01 16 14 N -0.80 -21.16 13.65 55.55 0.76 -20.40 16 15 Si 1.16 27.37 25.56 -169.99 -4.34 23.02 16 16 H -0.33 -7.79 7.11 56.52 0.40 -7.38 16 17 H -0.28 -6.54 6.67 56.52 0.38 -6.16 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 C -0.22 -4.97 8.70 -38.34 -0.33 -5.30 16 20 C 0.05 0.88 7.19 -39.03 -0.28 0.60 16 21 F -0.11 -2.10 15.87 2.25 0.04 -2.06 16 22 C 0.11 1.73 7.27 -39.40 -0.29 1.44 16 23 F -0.11 -1.70 16.73 2.25 0.04 -1.66 16 24 C -0.10 -1.32 6.34 -39.25 -0.25 -1.57 16 25 Cl -0.03 -0.39 28.14 -51.86 -1.46 -1.85 16 26 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 28 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 29 H 0.16 1.72 6.28 -52.49 -0.33 1.39 16 30 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 31 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 32 H 0.28 7.23 8.72 -40.82 -0.36 6.87 16 33 H 0.11 2.40 7.86 -52.48 -0.41 1.99 16 LS Contribution 313.46 15.07 4.72 4.72 Total: -1.00 -28.19 313.46 -6.36 -34.55 By element: Atomic # 1 Polarization: -2.43 SS G_CDS: -2.40 Total: -4.84 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -3.46 Total: -14.25 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.71 Total: -34.19 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: -0.20 Total: -3.44 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.07 Total: -3.72 kcal Atomic # 14 Polarization: 27.37 SS G_CDS: -4.34 Total: 23.02 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.46 Total: -1.85 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.19 -6.36 -34.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245855934.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.968 kcal (2) G-P(sol) polarization free energy of solvation -28.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds