Wall clock time and date at job start Tue Mar 31 2020 15:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35970 * 117.00222 * 2 1 4 4 C 1.38472 * 119.96100 * 359.97438 * 3 2 1 5 5 C 1.39296 * 119.90054 * 180.02562 * 4 3 2 6 6 C 1.48392 * 120.08228 * 179.97438 * 5 4 3 7 7 C 1.39722 * 120.41194 * 310.00224 * 6 5 4 8 8 N 1.31908 * 121.14523 * 180.02562 * 7 6 5 9 9 C 1.31522 * 122.12367 * 0.02562 * 8 7 6 10 10 C 1.40776 * 120.66881 * 359.97438 * 9 8 7 11 11 C 1.41435 * 120.60539 * 179.97438 * 10 9 8 12 12 H 1.07993 * 119.99961 * 155.57247 * 11 10 9 13 13 C 1.39939 * 120.00186 * 335.58478 * 11 10 9 14 14 N 1.30834 * 119.99399 * 342.34494 * 13 11 10 15 15 Si 1.86794 * 120.00263 * 162.34911 * 13 11 10 16 16 H 1.48502 * 109.47122 * 94.67205 * 15 13 11 17 17 H 1.48499 * 109.47035 * 214.66980 * 15 13 11 18 18 H 1.48503 * 109.47205 * 334.67141 * 15 13 11 19 19 C 1.39142 * 120.40732 * 130.02125 * 6 5 4 20 20 C 1.39492 * 119.83087 * 0.25099 * 5 4 3 21 21 F 1.35095 * 120.03684 * 179.72186 * 20 5 4 22 22 C 1.38435 * 119.92371 * 359.51573 * 20 5 4 23 23 F 1.35108 * 119.95215 * 180.22876 * 22 20 5 24 24 C 1.38508 * 120.10050 * 0.48889 * 22 20 5 25 25 Cl 1.73603 * 119.91684 * 179.76786 * 24 22 20 26 26 H 1.08993 * 109.46691 * 60.00240 * 1 2 3 27 27 H 1.09000 * 109.46939 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46799 * 300.00334 * 1 2 3 29 29 H 1.07998 * 120.04572 * 0.02562 * 4 3 2 30 30 H 1.07995 * 119.42723 * 359.73858 * 7 6 5 31 31 H 1.08001 * 119.66897 * 179.97438 * 9 8 7 32 32 H 0.97004 * 119.99244 * 180.02562 * 14 13 11 33 33 H 1.07997 * 120.95574 * 0.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2915 2.3723 -0.0005 5 6 1.9252 3.6128 -0.0011 6 6 1.1202 4.8593 -0.0022 7 6 0.0862 5.0327 -0.9258 8 7 -0.6382 6.1350 -0.9401 9 6 -0.4284 7.1207 -0.0950 10 6 0.5922 7.0336 0.8708 11 6 0.8170 8.0946 1.7786 12 1 1.2909 7.9005 2.7293 13 6 0.4250 9.3959 1.4449 14 7 0.1770 9.7048 0.1979 15 14 0.2562 10.6918 2.7795 16 1 1.5178 11.4691 2.8771 17 1 -0.8640 11.6065 2.4425 18 1 -0.0193 10.0300 4.0801 19 6 1.3860 5.8702 0.9162 20 6 3.3185 3.6801 -0.0064 21 9 3.9375 4.8809 -0.0126 22 6 4.0663 2.5151 -0.0009 23 9 5.4158 2.5797 -0.0014 24 6 3.4330 1.2833 -0.0005 25 17 4.3754 -0.1747 0.0003 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2130 2.3160 -0.0005 30 1 -0.1206 4.2525 -1.6434 31 1 -1.0453 8.0059 -0.1423 32 1 -0.0944 10.6069 -0.0334 33 1 2.1788 5.7667 1.6422 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245861015.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:27 Heat of formation + Delta-G solvation = -96.944611 kcal Electronic energy + Delta-G solvation = -24210.817107 eV Core-core repulsion = 20090.903816 eV Total energy + Delta-G solvation = -4119.913292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.67773 -49.72159 -41.43646 -40.24333 -38.41079 -37.66953 -35.94128 -33.89675 -32.56664 -30.95784 -30.23361 -28.14526 -27.58329 -25.12335 -24.01064 -23.10333 -22.63803 -19.95166 -19.13621 -18.73283 -18.68643 -17.77105 -17.54436 -17.45814 -17.00142 -16.67588 -16.36970 -16.24278 -16.05754 -15.97533 -15.45479 -14.78309 -14.38845 -14.21890 -14.14056 -13.95983 -13.52897 -13.38894 -13.24457 -13.00537 -12.73402 -12.69398 -12.55902 -12.30332 -12.14755 -11.97036 -11.85854 -11.25417 -10.51520 -10.18251 -9.81544 -9.57315 -9.22332 -8.79616 -6.51002 -0.62171 -0.33716 0.69963 0.74637 0.86049 1.39801 1.49187 1.56026 1.82876 1.99290 2.17707 2.59811 2.70295 3.13221 3.29537 3.46437 3.60054 3.74792 3.98893 4.15195 4.26109 4.40784 4.44846 4.45145 4.63170 4.68127 4.73143 4.83799 5.04445 5.12004 5.18000 5.26446 5.56318 5.74102 6.00022 6.03990 6.29617 6.65885 6.72454 7.66507 8.20371 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.019659 B = 0.003437 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.930429 B = 8144.365546 C = 9004.000217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.302 6.302 3 C 0.176 3.824 4 C -0.157 4.157 5 C 0.018 3.982 6 C -0.087 4.087 7 C -0.018 4.018 8 N -0.487 5.487 9 C 0.028 3.972 10 C 0.039 3.961 11 C -0.480 4.480 12 H 0.084 0.916 13 C 0.038 3.962 14 N -0.817 5.817 15 Si 0.988 3.012 16 H -0.264 1.264 17 H -0.262 1.262 18 H -0.255 1.255 19 C -0.177 4.177 20 C 0.028 3.972 21 F -0.133 7.133 22 C 0.115 3.885 23 F -0.116 7.116 24 C -0.099 4.099 25 Cl -0.020 7.020 26 H 0.074 0.926 27 H 0.132 0.868 28 H 0.070 0.930 29 H 0.180 0.820 30 H 0.157 0.843 31 H 0.139 0.861 32 H 0.296 0.704 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 -15.809 0.924 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.214 6.214 3 C 0.128 3.872 4 C -0.176 4.176 5 C 0.016 3.984 6 C -0.089 4.089 7 C -0.173 4.173 8 N -0.194 5.194 9 C -0.135 4.135 10 C 0.034 3.966 11 C -0.509 4.509 12 H 0.102 0.898 13 C -0.179 4.179 14 N -0.442 5.442 15 Si 0.808 3.192 16 H -0.188 1.188 17 H -0.187 1.187 18 H -0.179 1.179 19 C -0.202 4.202 20 C 0.007 3.993 21 F -0.112 7.112 22 C 0.093 3.907 23 F -0.095 7.095 24 C -0.128 4.128 25 Cl 0.009 6.991 26 H 0.093 0.907 27 H 0.150 0.850 28 H 0.089 0.911 29 H 0.197 0.803 30 H 0.175 0.825 31 H 0.156 0.844 32 H 0.107 0.893 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.483 -15.858 0.127 15.866 hybrid contribution 1.202 1.162 0.951 1.923 sum 1.684 -14.697 1.077 14.832 Atomic orbital electron populations 1.23626 0.74954 1.06728 1.03208 1.86183 1.24387 1.23627 1.87229 1.18082 0.88962 0.86082 0.94108 1.21380 1.02286 0.88120 1.05832 1.18587 0.89446 0.94310 0.96104 1.19216 0.97855 0.92954 0.98842 1.22330 0.96582 0.96945 1.01482 1.67140 1.27664 1.01315 1.23330 1.22918 0.98125 0.96929 0.95512 1.18728 0.91032 0.93107 0.93689 1.19833 1.35646 0.92337 1.03097 0.89759 1.26852 0.91146 1.01673 0.98255 1.69807 1.31750 1.22866 1.19759 0.85093 0.79201 0.76673 0.78247 1.18828 1.18659 1.17884 1.21508 1.01038 0.95612 1.02075 1.17557 0.90497 0.79765 1.11483 1.91522 1.82596 1.42697 1.94342 1.16733 0.77545 0.91153 1.05240 1.91549 1.27268 1.96925 1.93723 1.19753 0.90444 0.87485 1.15077 1.98375 1.71284 1.32440 1.96979 0.90750 0.84977 0.91116 0.80316 0.82533 0.84404 0.89340 0.87601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.30 -5.84 9.94 -93.22 -0.93 -6.77 16 3 C 0.18 4.18 6.67 22.47 0.15 4.33 16 4 C -0.16 -3.99 8.50 22.58 0.19 -3.80 16 5 C 0.02 0.59 5.49 -20.02 -0.11 0.48 16 6 C -0.09 -3.60 5.31 -20.00 -0.11 -3.70 16 7 C -0.02 -0.75 10.68 85.04 0.91 0.16 16 8 N -0.49 -23.75 10.32 -192.77 -1.99 -25.74 16 9 C 0.03 1.45 9.89 85.36 0.84 2.29 16 10 C 0.04 2.03 5.58 -21.22 -0.12 1.91 16 11 C -0.48 -24.64 9.08 23.47 0.21 -24.43 16 12 H 0.08 4.14 7.90 -2.91 -0.02 4.12 16 13 C 0.04 1.79 5.15 85.25 0.44 2.23 16 14 N -0.82 -40.87 10.97 21.83 0.24 -40.63 16 15 Si 0.99 35.91 29.59 68.60 2.03 37.94 16 16 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 17 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 18 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 19 C -0.18 -8.42 8.77 23.14 0.20 -8.22 16 20 C 0.03 0.97 7.18 22.62 0.16 1.13 16 21 F -0.13 -5.40 15.86 44.97 0.71 -4.69 16 22 C 0.11 3.51 7.27 22.38 0.16 3.67 16 23 F -0.12 -3.62 16.73 44.97 0.75 -2.87 16 24 C -0.10 -2.63 6.34 22.48 0.14 -2.49 16 25 Cl -0.02 -0.47 28.14 -2.72 -0.08 -0.55 16 26 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 27 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 29 H 0.18 3.63 6.27 -2.91 -0.02 3.61 16 30 H 0.16 5.37 8.04 -2.91 -0.02 5.34 16 31 H 0.14 7.49 6.15 -2.91 -0.02 7.47 16 32 H 0.30 13.24 8.30 -92.71 -0.77 12.47 16 33 H 0.11 4.92 7.86 -2.91 -0.02 4.89 16 Total: -1.00 -59.81 316.59 6.13 -53.68 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 1.19 Total: 14.85 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 4.19 Total: -25.22 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: -1.75 Total: -66.37 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.93 Total: -6.77 kcal Atomic # 9 Polarization: -9.02 SS G_CDS: 1.47 Total: -7.56 kcal Atomic # 14 Polarization: 35.91 SS G_CDS: 2.03 Total: 37.94 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.55 kcal Total: -59.81 6.13 -53.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245861015.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.266 kcal (2) G-P(sol) polarization free energy of solvation -59.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds