Wall clock time and date at job start Tue Mar 31 2020 14:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46517 * 2 1 4 4 H 1.09000 * 109.47278 * 304.31235 * 3 2 1 5 5 C 1.50705 * 109.46871 * 184.31704 * 3 2 1 6 6 H 1.07995 * 120.00016 * 240.00063 * 5 3 2 7 7 C 1.37879 * 119.99915 * 59.99968 * 5 3 2 8 8 N 1.31507 * 120.00207 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99750 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47369 * 60.00074 * 9 7 5 11 11 H 1.48499 * 109.47078 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47292 * 299.99967 * 9 7 5 13 13 N 1.46894 * 109.47593 * 64.31779 * 3 2 1 14 14 C 1.46900 * 111.00547 * 205.82844 * 13 3 2 15 15 C 1.50695 * 109.47418 * 174.65363 * 14 13 3 16 16 O 1.21259 * 120.00138 * 359.97438 * 15 14 13 17 17 C 1.47167 * 120.00264 * 180.02562 * 15 14 13 18 18 C 1.39872 * 120.16500 * 359.72292 * 17 15 14 19 19 C 1.37876 * 119.84522 * 179.71921 * 18 17 15 20 20 C 1.38405 * 120.18322 * 0.55957 * 19 18 17 21 21 C 1.38473 * 120.33646 * 359.71951 * 20 19 18 22 22 Br 1.89107 * 119.92176 * 180.02562 * 21 20 19 23 23 C 1.38003 * 120.15431 * 359.97438 * 21 20 19 24 24 H 1.09000 * 109.47682 * 54.72696 * 1 2 3 25 25 H 1.09009 * 109.46552 * 174.72435 * 1 2 3 26 26 H 1.08994 * 109.47391 * 294.72073 * 1 2 3 27 27 H 1.08995 * 109.47236 * 240.00344 * 2 1 3 28 28 H 1.08996 * 109.47501 * 119.99579 * 2 1 3 29 29 H 0.97002 * 120.00400 * 179.97438 * 8 7 5 30 30 H 1.00896 * 111.00036 * 81.87062 * 13 3 2 31 31 H 1.09002 * 109.46559 * 294.65156 * 14 13 3 32 32 H 1.08998 * 109.46721 * 54.65235 * 14 13 3 33 33 H 1.08002 * 120.07565 * 0.02562 * 18 17 15 34 34 H 1.07998 * 119.90678 * 180.26999 * 19 18 17 35 35 H 1.08000 * 119.83378 * 179.73604 * 20 19 18 36 36 H 1.07996 * 120.09088 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 1 1.6148 1.9782 -0.8488 5 6 3.5431 1.4440 -0.1070 6 1 4.1396 1.8916 0.6741 7 6 4.1568 0.8737 -1.2020 8 7 3.4305 0.3290 -2.1534 9 14 6.0201 0.8762 -1.3349 10 1 6.5998 0.1468 -0.1785 11 1 6.4272 0.2077 -2.5969 12 1 6.5145 2.2765 -1.3353 13 7 1.6372 2.1043 1.2481 14 6 1.5411 3.5588 1.0656 15 6 1.0012 4.1883 2.3238 16 8 0.7233 3.4939 3.2783 17 6 0.8101 5.6459 2.3939 18 6 1.1339 6.4507 1.2967 19 6 0.9467 7.8149 1.3675 20 6 0.4507 8.3901 2.5245 21 6 0.1330 7.6011 3.6172 22 35 -0.5447 8.3993 5.1920 23 6 0.3089 6.2336 3.5594 24 1 -0.3634 0.5934 -0.8390 25 1 -0.3633 -1.0234 -0.0945 26 1 -0.3634 0.4297 0.9334 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.8623 -0.0719 -2.9240 30 1 2.2704 1.8752 1.9994 31 1 2.5301 3.9642 0.8520 32 1 0.8714 3.7771 0.2338 33 1 1.5249 6.0041 0.3945 34 1 1.1923 8.4368 0.5194 35 1 0.3103 9.4597 2.5752 36 1 0.0605 5.6191 4.4121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255149489.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:22 Heat of formation + Delta-G solvation = -15.525709 kcal Electronic energy + Delta-G solvation = -18951.468270 eV Core-core repulsion = 15867.578491 eV Total energy + Delta-G solvation = -3083.889779 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.02745 -38.22995 -35.96029 -32.95598 -32.38259 -31.52996 -31.07166 -29.58537 -27.44115 -25.50789 -23.48046 -22.61336 -22.22128 -19.70574 -19.36924 -17.32284 -16.80971 -15.81544 -15.77492 -14.94751 -14.84200 -14.46493 -14.35645 -13.81544 -13.53925 -13.47197 -13.02948 -12.61580 -12.07954 -12.04836 -11.85257 -11.44783 -11.22625 -11.19170 -11.10134 -10.94622 -10.69198 -10.58643 -10.21989 -9.85413 -9.60714 -9.29194 -9.27243 -9.08254 -9.00198 -8.43381 -7.34903 -6.05492 -4.19444 0.46867 0.90684 1.32686 2.43824 3.24096 3.30064 3.32418 3.52168 4.02205 4.34745 4.54003 4.70307 4.87973 5.02438 5.13071 5.19781 5.43339 5.53197 5.60282 5.87896 5.90420 6.01600 6.06979 6.11173 6.40181 6.44884 6.51397 6.71577 7.06700 7.18197 7.37882 7.52480 7.71428 7.78495 8.02583 8.06286 8.24470 8.56663 8.92414 9.48727 10.94471 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.022878 B = 0.002715 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.585868 B =10311.330805 C =10918.715668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.551 4.551 6 H 0.053 0.947 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.678 5.678 14 C 0.025 3.975 15 C 0.391 3.609 16 O -0.434 6.434 17 C -0.152 4.152 18 C -0.057 4.057 19 C -0.126 4.126 20 C -0.069 4.069 21 C -0.105 4.105 22 Br -0.051 7.051 23 C -0.039 4.039 24 H 0.036 0.964 25 H 0.025 0.975 26 H 0.047 0.953 27 H 0.091 0.909 28 H 0.032 0.968 29 H 0.263 0.737 30 H 0.336 0.664 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.324 18.411 9.154 21.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C 0.109 3.891 4 H 0.051 0.949 5 C -0.590 4.590 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.717 3.283 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.308 5.308 14 C -0.106 4.106 15 C 0.266 3.734 16 O -0.308 6.308 17 C -0.155 4.155 18 C -0.075 4.075 19 C -0.144 4.144 20 C -0.089 4.089 21 C -0.185 4.185 22 Br 0.034 6.966 23 C -0.059 4.059 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.109 0.891 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.153 0.847 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.162 0.838 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.396 18.116 9.962 22.314 hybrid contribution 2.209 0.196 -0.638 2.308 sum -6.187 18.311 9.325 21.460 Atomic orbital electron populations 1.21697 0.98927 0.98383 1.00429 1.21490 0.92168 0.98985 1.01794 1.19195 0.92778 0.91395 0.85763 0.94867 1.21828 0.92619 1.38648 1.05919 0.92860 1.24920 0.98022 0.94817 0.95593 1.69862 1.35063 1.37713 1.09474 0.86707 0.85926 0.78210 0.77445 1.20225 1.21190 1.20375 1.60726 1.56213 1.03701 1.10153 1.22081 1.00711 0.92697 0.95097 1.22850 0.74420 0.86505 0.89605 1.90494 1.38052 1.64403 1.37805 1.20818 1.03428 0.96419 0.94824 1.21760 0.94222 0.93557 0.97966 1.21191 1.00204 0.95093 0.97960 1.21338 0.95787 1.00051 0.91690 1.21716 1.07498 0.95191 0.94062 1.96725 1.85615 1.81805 1.32413 1.21401 0.93761 0.92641 0.98051 0.94495 0.95596 0.93358 0.89082 0.94936 0.92720 0.84740 0.91733 0.88458 0.83822 0.84377 0.84744 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.73 37.16 0.36 -2.48 16 2 C -0.11 -2.51 5.45 -26.73 -0.15 -2.66 16 3 C 0.22 5.16 1.98 -68.87 -0.14 5.02 16 4 H 0.03 0.86 7.70 -51.93 -0.40 0.46 16 5 C -0.55 -14.30 8.47 -34.44 -0.29 -14.59 16 6 H 0.05 1.37 7.73 -52.49 -0.41 0.97 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.17 11.30 55.43 0.63 -23.54 16 9 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 13 N -0.68 -14.12 5.30 -109.23 -0.58 -14.70 16 14 C 0.02 0.42 4.60 -4.98 -0.02 0.40 16 15 C 0.39 6.25 7.17 -30.69 -0.22 6.03 16 16 O -0.43 -8.19 16.31 5.58 0.09 -8.10 16 17 C -0.15 -1.99 5.87 -105.07 -0.62 -2.61 16 18 C -0.06 -0.60 9.47 -39.10 -0.37 -0.97 16 19 C -0.13 -1.11 10.03 -39.65 -0.40 -1.50 16 20 C -0.07 -0.63 9.78 -39.43 -0.39 -1.01 16 21 C -0.11 -1.14 6.22 -39.58 -0.25 -1.39 16 22 Br -0.05 -0.50 33.69 -68.01 -2.29 -2.79 16 23 C -0.04 -0.48 9.33 -39.08 -0.36 -0.85 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 26 H 0.05 0.99 7.88 -51.93 -0.41 0.58 16 27 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.34 7.21 8.30 -39.29 -0.33 6.88 16 31 H 0.07 1.09 8.05 -51.93 -0.42 0.68 16 32 H 0.10 1.57 7.87 -51.93 -0.41 1.16 16 33 H 0.14 1.36 7.05 -52.49 -0.37 0.99 16 34 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.14 1.84 7.65 -52.49 -0.40 1.44 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -28.37 327.91 -9.86 -38.23 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.70 Total: 5.35 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -2.93 Total: -14.86 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.05 Total: -38.25 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.09 Total: -8.10 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.29 Total: -2.79 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.37 -9.86 -38.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255149489.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.709 kcal (2) G-P(sol) polarization free energy of solvation -28.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds