Wall clock time and date at job start Tue Mar 31 2020 14:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46517 * 2 1 4 4 H 1.09000 * 109.47278 * 304.31235 * 3 2 1 5 5 C 1.50705 * 109.46871 * 184.31704 * 3 2 1 6 6 H 1.07995 * 120.00016 * 240.00063 * 5 3 2 7 7 C 1.37879 * 119.99915 * 59.99968 * 5 3 2 8 8 N 1.31507 * 120.00207 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99750 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47369 * 60.00074 * 9 7 5 11 11 H 1.48499 * 109.47078 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47292 * 299.99967 * 9 7 5 13 13 N 1.46894 * 109.47593 * 64.31779 * 3 2 1 14 14 C 1.46900 * 111.00547 * 205.82844 * 13 3 2 15 15 C 1.50695 * 109.47418 * 174.65363 * 14 13 3 16 16 O 1.21259 * 120.00138 * 359.97438 * 15 14 13 17 17 C 1.47167 * 120.00264 * 180.02562 * 15 14 13 18 18 C 1.39872 * 120.16500 * 359.72292 * 17 15 14 19 19 C 1.37876 * 119.84522 * 179.71921 * 18 17 15 20 20 C 1.38405 * 120.18322 * 0.55957 * 19 18 17 21 21 C 1.38473 * 120.33646 * 359.71951 * 20 19 18 22 22 Br 1.89107 * 119.92176 * 180.02562 * 21 20 19 23 23 C 1.38003 * 120.15431 * 359.97438 * 21 20 19 24 24 H 1.09000 * 109.47682 * 54.72696 * 1 2 3 25 25 H 1.09009 * 109.46552 * 174.72435 * 1 2 3 26 26 H 1.08994 * 109.47391 * 294.72073 * 1 2 3 27 27 H 1.08995 * 109.47236 * 240.00344 * 2 1 3 28 28 H 1.08996 * 109.47501 * 119.99579 * 2 1 3 29 29 H 0.97002 * 120.00400 * 179.97438 * 8 7 5 30 30 H 1.00896 * 111.00036 * 81.87062 * 13 3 2 31 31 H 1.09002 * 109.46559 * 294.65156 * 14 13 3 32 32 H 1.08998 * 109.46721 * 54.65235 * 14 13 3 33 33 H 1.08002 * 120.07565 * 0.02562 * 18 17 15 34 34 H 1.07998 * 119.90678 * 180.26999 * 19 18 17 35 35 H 1.08000 * 119.83378 * 179.73604 * 20 19 18 36 36 H 1.07996 * 120.09088 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 1 1.6148 1.9782 -0.8488 5 6 3.5431 1.4440 -0.1070 6 1 4.1396 1.8916 0.6741 7 6 4.1568 0.8737 -1.2020 8 7 3.4305 0.3290 -2.1534 9 14 6.0201 0.8762 -1.3349 10 1 6.5998 0.1468 -0.1785 11 1 6.4272 0.2077 -2.5969 12 1 6.5145 2.2765 -1.3353 13 7 1.6372 2.1043 1.2481 14 6 1.5411 3.5588 1.0656 15 6 1.0012 4.1883 2.3238 16 8 0.7233 3.4939 3.2783 17 6 0.8101 5.6459 2.3939 18 6 1.1339 6.4507 1.2967 19 6 0.9467 7.8149 1.3675 20 6 0.4507 8.3901 2.5245 21 6 0.1330 7.6011 3.6172 22 35 -0.5447 8.3993 5.1920 23 6 0.3089 6.2336 3.5594 24 1 -0.3634 0.5934 -0.8390 25 1 -0.3633 -1.0234 -0.0945 26 1 -0.3634 0.4297 0.9334 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.8623 -0.0719 -2.9240 30 1 2.2704 1.8752 1.9994 31 1 2.5301 3.9642 0.8520 32 1 0.8714 3.7771 0.2338 33 1 1.5249 6.0041 0.3945 34 1 1.1923 8.4368 0.5194 35 1 0.3103 9.4597 2.5752 36 1 0.0605 5.6191 4.4121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255149489.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:22 Heat of formation + Delta-G solvation = -30.850784 kcal Electronic energy + Delta-G solvation = -18952.132815 eV Core-core repulsion = 15867.578491 eV Total energy + Delta-G solvation = -3084.554324 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.10721 -39.33438 -37.73235 -34.44794 -33.65968 -32.88581 -32.32652 -30.49082 -29.05683 -27.11203 -24.87721 -23.94438 -23.26809 -21.47811 -20.62210 -18.76999 -18.28189 -16.96944 -16.89443 -16.60080 -16.27043 -15.70432 -15.56522 -15.12711 -14.89407 -14.58916 -14.32865 -14.06479 -13.81227 -13.43439 -13.08048 -13.02752 -12.84508 -12.76054 -12.49941 -12.24552 -12.07922 -11.91184 -11.60769 -11.50662 -11.37280 -11.07814 -10.61516 -10.44049 -10.13534 -9.82501 -9.08944 -8.04836 -6.27125 -0.46312 0.07510 0.52161 1.34796 1.41186 1.43440 1.49957 2.41499 2.61478 2.83992 3.16175 3.76030 3.78834 3.94971 3.98922 4.17730 4.27336 4.45488 4.61412 4.64085 4.67468 4.76185 4.78201 4.93005 5.06086 5.16332 5.19034 5.24347 5.41894 5.50797 5.61739 5.66493 5.75859 6.07006 6.16143 6.33807 6.52552 6.76138 6.96947 7.44456 8.91836 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.022878 B = 0.002715 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.585868 B =10311.330805 C =10918.715668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.224 3.776 4 H 0.013 0.987 5 C -0.564 4.564 6 H 0.050 0.950 7 C 0.025 3.975 8 N -0.908 5.908 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.270 1.270 13 N -0.680 5.680 14 C 0.024 3.976 15 C 0.400 3.600 16 O -0.473 6.473 17 C -0.172 4.172 18 C -0.056 4.056 19 C -0.116 4.116 20 C -0.057 4.057 21 C -0.115 4.115 22 Br -0.044 7.044 23 C -0.050 4.050 24 H 0.036 0.964 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.023 0.977 29 H 0.263 0.737 30 H 0.330 0.670 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.154 0.846 34 H 0.175 0.825 35 H 0.164 0.836 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.085 20.641 8.786 23.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.116 3.884 4 H 0.031 0.969 5 C -0.603 4.603 6 H 0.069 0.931 7 C -0.176 4.176 8 N -0.547 5.547 9 Si 0.775 3.225 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.195 1.195 13 N -0.309 5.309 14 C -0.106 4.106 15 C 0.279 3.721 16 O -0.349 6.349 17 C -0.175 4.175 18 C -0.074 4.074 19 C -0.134 4.134 20 C -0.077 4.077 21 C -0.194 4.194 22 Br 0.042 6.958 23 C -0.070 4.070 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.172 0.828 34 H 0.192 0.808 35 H 0.181 0.819 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.162 20.369 9.596 23.949 hybrid contribution 2.105 -0.405 -0.513 2.204 sum -6.057 19.964 9.083 22.754 Atomic orbital electron populations 1.21550 0.96553 0.99590 1.00485 1.21387 0.94287 0.98631 0.99984 1.18971 0.91723 0.91454 0.86244 0.96866 1.22116 0.93839 1.38491 1.05843 0.93148 1.25613 1.01990 0.94593 0.95394 1.69981 1.36543 1.38288 1.09850 0.85759 0.81117 0.78419 0.77199 1.20290 1.20972 1.19523 1.60632 1.55644 1.06057 1.08575 1.22167 1.01398 0.90563 0.96495 1.22872 0.73062 0.87960 0.88253 1.90481 1.40111 1.65586 1.38734 1.20512 1.06041 0.94547 0.96368 1.21955 0.93653 0.94437 0.97373 1.21585 0.98561 0.94410 0.98843 1.21751 0.93781 1.01348 0.90815 1.21844 1.07770 0.94676 0.95108 1.96732 1.85536 1.81298 1.32276 1.21330 0.94547 0.93543 0.97590 0.94465 0.93808 0.93148 0.91644 0.95833 0.92771 0.85345 0.91256 0.87352 0.82813 0.80808 0.81890 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.12 9.73 71.98 0.70 -4.42 16 2 C -0.10 -5.03 5.45 30.59 0.17 -4.86 16 3 C 0.22 10.86 1.98 44.17 0.09 10.95 16 4 H 0.01 0.70 7.70 -2.39 -0.02 0.68 16 5 C -0.56 -29.49 8.47 25.60 0.22 -29.27 16 6 H 0.05 2.61 7.73 -2.91 -0.02 2.58 16 7 C 0.02 1.31 5.29 84.66 0.45 1.76 16 8 N -0.91 -50.14 11.30 21.45 0.24 -49.90 16 9 Si 0.95 41.92 29.54 68.60 2.03 43.95 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 13 N -0.68 -28.73 5.30 -499.48 -2.65 -31.38 16 14 C 0.02 0.82 4.60 85.56 0.39 1.21 16 15 C 0.40 12.94 7.17 28.03 0.20 13.14 16 16 O -0.47 -18.38 16.31 -2.96 -0.05 -18.43 16 17 C -0.17 -4.39 5.87 -20.15 -0.12 -4.51 16 18 C -0.06 -1.07 9.47 22.58 0.21 -0.85 16 19 C -0.12 -1.60 10.03 22.22 0.22 -1.38 16 20 C -0.06 -0.85 9.78 22.37 0.22 -0.63 16 21 C -0.11 -2.28 6.22 22.27 0.14 -2.14 16 22 Br -0.04 -0.80 33.69 -20.37 -0.69 -1.48 16 23 C -0.05 -1.23 9.33 22.60 0.21 -1.02 16 24 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.05 2.03 7.88 -2.39 -0.02 2.01 16 27 H 0.07 3.51 5.97 -2.39 -0.01 3.49 16 28 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 30 H 0.33 14.51 8.30 -89.70 -0.74 13.76 16 31 H 0.07 2.33 8.05 -2.39 -0.02 2.31 16 32 H 0.11 3.45 7.87 -2.39 -0.02 3.43 16 33 H 0.15 2.57 7.05 -2.91 -0.02 2.55 16 34 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.13 3.44 7.65 -2.91 -0.02 3.42 16 Total: -1.00 -61.35 327.91 2.33 -59.01 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.35 Total: 20.25 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 3.10 Total: -22.02 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -2.41 Total: -81.28 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.05 Total: -18.43 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 35 Polarization: -0.80 SS G_CDS: -0.69 Total: -1.48 kcal Total: -61.35 2.33 -59.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255149489.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.162 kcal (2) G-P(sol) polarization free energy of solvation -61.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds