Wall clock time and date at job start Tue Mar 31 2020 14:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47118 * 2 1 4 4 H 1.09005 * 109.46875 * 174.67596 * 3 2 1 5 5 C 1.50700 * 109.47102 * 54.68050 * 3 2 1 6 6 H 1.08001 * 119.99865 * 240.00199 * 5 3 2 7 7 C 1.37876 * 120.00071 * 59.99658 * 5 3 2 8 8 N 1.31514 * 120.00180 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00016 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47267 * 269.99865 * 9 7 5 11 11 H 1.48503 * 109.47155 * 30.00285 * 9 7 5 12 12 H 1.48504 * 109.47273 * 149.99719 * 9 7 5 13 13 N 1.46901 * 109.47416 * 294.67644 * 3 2 1 14 14 C 1.46893 * 111.00109 * 273.54969 * 13 3 2 15 15 C 1.50701 * 109.47330 * 178.56425 * 14 13 3 16 16 O 1.21264 * 119.99647 * 0.02562 * 15 14 13 17 17 C 1.47105 * 120.00460 * 179.97438 * 15 14 13 18 18 C 1.39893 * 120.15622 * 359.73599 * 17 15 14 19 19 C 1.37837 * 119.82938 * 179.73860 * 18 17 15 20 20 C 1.38527 * 120.16196 * 0.50754 * 19 18 17 21 21 Br 1.89097 * 119.83487 * 179.74129 * 20 19 18 22 22 C 1.38529 * 120.32783 * 359.76787 * 20 19 18 23 23 C 1.37828 * 120.16507 * 359.97272 * 22 20 19 24 24 H 1.08997 * 109.47518 * 305.61622 * 1 2 3 25 25 H 1.09006 * 109.47225 * 65.61478 * 1 2 3 26 26 H 1.08998 * 109.47108 * 185.61420 * 1 2 3 27 27 H 1.09000 * 109.47356 * 240.00399 * 2 1 3 28 28 H 1.09000 * 109.47229 * 120.00356 * 2 1 3 29 29 H 0.96996 * 120.00503 * 180.02562 * 8 7 5 30 30 H 1.00903 * 110.99433 * 37.50731 * 13 3 2 31 31 H 1.08997 * 109.47418 * 298.57328 * 14 13 3 32 32 H 1.09003 * 109.46971 * 58.56970 * 14 13 3 33 33 H 1.07993 * 120.08578 * 359.97438 * 18 17 15 34 34 H 1.07997 * 119.91662 * 180.25511 * 19 18 17 35 35 H 1.08004 * 119.91601 * 179.97438 * 22 20 19 36 36 H 1.07996 * 120.08737 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1258 1.4439 0.0954 5 6 1.4329 2.1899 1.1593 6 1 0.8242 3.0637 0.9792 7 6 1.6546 1.7582 2.4498 8 7 1.1244 2.4101 3.4615 9 14 2.7079 0.2473 2.7613 10 1 1.8474 -0.9631 2.7687 11 1 3.7265 0.1240 1.6878 12 1 3.3872 0.3797 4.0752 13 7 1.6580 2.0970 -1.2585 14 6 2.6559 1.8454 -2.3067 15 6 2.2136 2.5013 -3.5893 16 8 1.1701 3.1179 -3.6264 17 6 3.0481 2.3945 -4.7960 18 6 4.2557 1.6895 -4.7552 19 6 5.0297 1.5891 -5.8913 20 6 4.6195 2.1930 -7.0686 21 35 5.6922 2.0556 -8.6198 22 6 3.4277 2.8976 -7.1150 23 6 2.6406 3.0021 -5.9884 24 1 -0.3634 0.5984 0.8354 25 1 -0.3634 0.4243 -0.9360 26 1 -0.3633 -1.0227 0.1005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.2807 2.1067 4.3695 30 1 0.7397 1.8022 -1.5551 31 1 3.6170 2.2582 -2.0000 32 1 2.7553 0.7713 -2.4634 33 1 4.5788 1.2219 -3.8370 34 1 5.9602 1.0417 -5.8625 35 1 3.1145 3.3662 -8.0363 36 1 1.7119 3.5520 -6.0259 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255150135.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:31 Heat of formation + Delta-G solvation = -1.077233 kcal Electronic energy + Delta-G solvation = -18993.060064 eV Core-core repulsion = 15909.796818 eV Total energy + Delta-G solvation = -3083.263246 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.19236 -38.43830 -36.61207 -33.02344 -32.52391 -31.62373 -31.15644 -29.96065 -27.55354 -25.66810 -23.39691 -23.24099 -22.71345 -19.91511 -19.59080 -17.44430 -16.64388 -15.87864 -15.81801 -15.42426 -15.07722 -14.63345 -14.54146 -13.95624 -13.68954 -13.45519 -13.38703 -13.11578 -12.58295 -12.32028 -12.11395 -12.02518 -11.60350 -11.17880 -11.15039 -10.81605 -10.69911 -10.67123 -10.50326 -9.94112 -9.65605 -9.45729 -9.38602 -9.14028 -9.08393 -8.55768 -7.50954 -6.05265 -4.01611 0.22406 0.92970 1.17523 2.24574 3.23837 3.31000 3.36023 3.39612 3.85834 4.35068 4.38484 4.48895 4.86908 4.90473 5.06641 5.16681 5.24079 5.26946 5.54438 5.59057 5.67980 5.76274 5.79180 5.87130 5.95171 6.02537 6.13242 6.33639 6.48799 6.70865 6.75661 6.93081 7.26720 7.56953 7.66388 7.83377 8.23892 8.67256 9.07920 9.56650 11.08159 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.030867 B = 0.002474 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.913254 B =11314.870922 C =11730.050859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.160 4.160 3 C 0.186 3.814 4 H 0.034 0.966 5 C -0.491 4.491 6 H 0.083 0.917 7 C 0.070 3.930 8 N -0.899 5.899 9 Si 0.880 3.120 10 H -0.279 1.279 11 H -0.270 1.270 12 H -0.296 1.296 13 N -0.661 5.661 14 C 0.012 3.988 15 C 0.390 3.610 16 O -0.428 6.428 17 C -0.143 4.143 18 C -0.068 4.068 19 C -0.104 4.104 20 C -0.069 4.069 21 Br -0.049 7.049 22 C -0.104 4.104 23 C -0.059 4.059 24 H 0.083 0.917 25 H 0.041 0.959 26 H 0.031 0.969 27 H 0.032 0.968 28 H 0.051 0.949 29 H 0.263 0.737 30 H 0.340 0.660 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.996 -3.618 -25.241 27.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.199 4.199 3 C 0.077 3.923 4 H 0.052 0.948 5 C -0.529 4.529 6 H 0.101 0.899 7 C -0.132 4.132 8 N -0.538 5.538 9 Si 0.711 3.289 10 H -0.206 1.206 11 H -0.196 1.196 12 H -0.224 1.224 13 N -0.293 5.293 14 C -0.118 4.118 15 C 0.265 3.735 16 O -0.300 6.300 17 C -0.145 4.145 18 C -0.087 4.087 19 C -0.123 4.123 20 C -0.148 4.148 21 Br 0.036 6.964 22 C -0.124 4.124 23 C -0.078 4.078 24 H 0.102 0.898 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.160 0.840 31 H 0.121 0.879 32 H 0.073 0.927 33 H 0.162 0.838 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.082 -2.708 -25.462 27.519 hybrid contribution 0.351 -1.915 0.390 1.986 sum 10.433 -4.624 -25.072 27.547 Atomic orbital electron populations 1.21665 0.95645 0.99758 1.02626 1.22517 0.97481 1.00920 0.98962 1.19749 0.96073 0.88275 0.88175 0.94776 1.20879 1.31267 1.12828 0.87974 0.89870 1.24894 0.95551 0.96601 0.96133 1.69876 1.44861 1.40204 0.98872 0.86974 0.81107 0.83904 0.76900 1.20606 1.19554 1.22404 1.60518 1.03764 1.62910 1.02113 1.22307 0.99601 0.98551 0.91372 1.22666 0.84599 0.77853 0.88384 1.90530 1.22242 1.31672 1.85569 1.20891 0.96921 1.00703 0.95997 1.21560 0.92620 0.95954 0.98550 1.21114 1.00603 0.99458 0.91166 1.22092 0.96695 1.02916 0.93127 1.96752 1.67819 1.97539 1.34243 1.21105 0.93045 0.98724 0.99483 1.21476 0.99393 0.96021 0.90910 0.89846 0.94042 0.94996 0.94945 0.93114 0.92670 0.83978 0.87864 0.92693 0.83817 0.84345 0.84433 0.83846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.40 37.15 0.35 -2.41 16 2 C -0.16 -3.28 5.22 -26.73 -0.14 -3.42 16 3 C 0.19 4.19 1.93 -68.86 -0.13 4.05 16 4 H 0.03 0.78 6.85 -51.93 -0.36 0.43 16 5 C -0.49 -13.42 7.82 -34.44 -0.27 -13.69 16 6 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 7 C 0.07 1.95 5.42 -17.82 -0.10 1.85 16 8 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 9 Si 0.88 21.25 24.32 -169.99 -4.13 17.11 16 10 H -0.28 -6.59 6.92 56.52 0.39 -6.20 16 11 H -0.27 -6.15 6.53 56.52 0.37 -5.78 16 12 H -0.30 -7.25 7.11 56.52 0.40 -6.84 16 13 N -0.66 -13.30 5.89 -109.22 -0.64 -13.94 16 14 C 0.01 0.18 4.57 -4.98 -0.02 0.16 16 15 C 0.39 5.69 7.15 -30.71 -0.22 5.47 16 16 O -0.43 -7.59 16.16 5.57 0.09 -7.50 16 17 C -0.14 -1.66 5.87 -105.06 -0.62 -2.27 16 18 C -0.07 -0.64 9.47 -39.11 -0.37 -1.01 16 19 C -0.10 -0.90 9.76 -39.62 -0.39 -1.28 16 20 C -0.07 -0.62 6.23 -39.37 -0.25 -0.87 16 21 Br -0.05 -0.40 33.69 -68.01 -2.29 -2.69 16 22 C -0.10 -0.94 9.76 -39.62 -0.39 -1.33 16 23 C -0.06 -0.62 9.60 -39.11 -0.38 -1.00 16 24 H 0.08 1.90 6.83 -51.93 -0.35 1.55 16 25 H 0.04 0.75 6.66 -51.93 -0.35 0.40 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.03 0.57 7.43 -51.93 -0.39 0.19 16 28 H 0.05 1.11 3.43 -51.93 -0.18 0.93 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.34 6.79 6.30 -39.29 -0.25 6.54 16 31 H 0.10 1.47 8.02 -51.93 -0.42 1.06 16 32 H 0.06 0.74 7.39 -51.93 -0.38 0.35 16 33 H 0.14 1.12 7.05 -52.49 -0.37 0.75 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.14 1.48 7.65 -52.49 -0.40 1.07 16 LS Contribution 315.01 15.07 4.75 4.75 Total: -1.00 -30.76 315.01 -8.68 -39.44 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -4.31 Total: 4.90 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -2.91 Total: -15.75 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.13 Total: -40.26 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.09 Total: -7.50 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.13 Total: 17.11 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -2.29 Total: -2.69 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.76 -8.68 -39.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150135.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.362 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds