Wall clock time and date at job start Tue Mar 31 2020 14:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47118 * 2 1 4 4 H 1.09005 * 109.46875 * 174.67596 * 3 2 1 5 5 C 1.50700 * 109.47102 * 54.68050 * 3 2 1 6 6 H 1.08001 * 119.99865 * 240.00199 * 5 3 2 7 7 C 1.37876 * 120.00071 * 59.99658 * 5 3 2 8 8 N 1.31514 * 120.00180 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00016 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47267 * 269.99865 * 9 7 5 11 11 H 1.48503 * 109.47155 * 30.00285 * 9 7 5 12 12 H 1.48504 * 109.47273 * 149.99719 * 9 7 5 13 13 N 1.46901 * 109.47416 * 294.67644 * 3 2 1 14 14 C 1.46893 * 111.00109 * 273.54969 * 13 3 2 15 15 C 1.50701 * 109.47330 * 178.56425 * 14 13 3 16 16 O 1.21264 * 119.99647 * 0.02562 * 15 14 13 17 17 C 1.47105 * 120.00460 * 179.97438 * 15 14 13 18 18 C 1.39893 * 120.15622 * 359.73599 * 17 15 14 19 19 C 1.37837 * 119.82938 * 179.73860 * 18 17 15 20 20 C 1.38527 * 120.16196 * 0.50754 * 19 18 17 21 21 Br 1.89097 * 119.83487 * 179.74129 * 20 19 18 22 22 C 1.38529 * 120.32783 * 359.76787 * 20 19 18 23 23 C 1.37828 * 120.16507 * 359.97272 * 22 20 19 24 24 H 1.08997 * 109.47518 * 305.61622 * 1 2 3 25 25 H 1.09006 * 109.47225 * 65.61478 * 1 2 3 26 26 H 1.08998 * 109.47108 * 185.61420 * 1 2 3 27 27 H 1.09000 * 109.47356 * 240.00399 * 2 1 3 28 28 H 1.09000 * 109.47229 * 120.00356 * 2 1 3 29 29 H 0.96996 * 120.00503 * 180.02562 * 8 7 5 30 30 H 1.00903 * 110.99433 * 37.50731 * 13 3 2 31 31 H 1.08997 * 109.47418 * 298.57328 * 14 13 3 32 32 H 1.09003 * 109.46971 * 58.56970 * 14 13 3 33 33 H 1.07993 * 120.08578 * 359.97438 * 18 17 15 34 34 H 1.07997 * 119.91662 * 180.25511 * 19 18 17 35 35 H 1.08004 * 119.91601 * 179.97438 * 22 20 19 36 36 H 1.07996 * 120.08737 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1258 1.4439 0.0954 5 6 1.4329 2.1899 1.1593 6 1 0.8242 3.0637 0.9792 7 6 1.6546 1.7582 2.4498 8 7 1.1244 2.4101 3.4615 9 14 2.7079 0.2473 2.7613 10 1 1.8474 -0.9631 2.7687 11 1 3.7265 0.1240 1.6878 12 1 3.3872 0.3797 4.0752 13 7 1.6580 2.0970 -1.2585 14 6 2.6559 1.8454 -2.3067 15 6 2.2136 2.5013 -3.5893 16 8 1.1701 3.1179 -3.6264 17 6 3.0481 2.3945 -4.7960 18 6 4.2557 1.6895 -4.7552 19 6 5.0297 1.5891 -5.8913 20 6 4.6195 2.1930 -7.0686 21 35 5.6922 2.0556 -8.6198 22 6 3.4277 2.8976 -7.1150 23 6 2.6406 3.0021 -5.9884 24 1 -0.3634 0.5984 0.8354 25 1 -0.3634 0.4243 -0.9360 26 1 -0.3633 -1.0227 0.1005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.2807 2.1067 4.3695 30 1 0.7397 1.8022 -1.5551 31 1 3.6170 2.2582 -2.0000 32 1 2.7553 0.7713 -2.4634 33 1 4.5788 1.2219 -3.8370 34 1 5.9602 1.0417 -5.8625 35 1 3.1145 3.3662 -8.0363 36 1 1.7119 3.5520 -6.0259 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255150135.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:30 Heat of formation + Delta-G solvation = -21.085320 kcal Electronic energy + Delta-G solvation = -18993.927680 eV Core-core repulsion = 15909.796818 eV Total energy + Delta-G solvation = -3084.130862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.16669 -39.43328 -38.21677 -34.53323 -33.70802 -32.96851 -32.16843 -30.79826 -29.17464 -27.14750 -25.03485 -24.23593 -23.55501 -21.39519 -20.85648 -18.66279 -18.21142 -17.21690 -16.98282 -16.56233 -16.40233 -15.79540 -15.61991 -15.09889 -14.97480 -14.83578 -14.59795 -14.45679 -14.14986 -13.84024 -13.33592 -12.93884 -12.85829 -12.57176 -12.45901 -12.32430 -12.24023 -11.89739 -11.66117 -11.34162 -11.25625 -11.19139 -10.72747 -10.61396 -10.15741 -9.83687 -9.03730 -8.21231 -6.22225 -0.60802 0.22849 0.49399 1.26748 1.33885 1.38024 1.48357 2.36818 2.59551 2.78863 3.13374 3.60428 3.65460 3.83060 4.07400 4.19072 4.23735 4.28818 4.35094 4.42837 4.47187 4.52529 4.56944 4.88522 4.90002 5.00589 5.05934 5.06894 5.15337 5.24992 5.28876 5.58650 5.61723 5.73578 6.01430 6.47598 6.68503 6.72034 6.83875 7.40868 8.96688 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.030867 B = 0.002474 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.913254 B =11314.870922 C =11730.050859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.157 4.157 3 C 0.192 3.808 4 H 0.040 0.960 5 C -0.491 4.491 6 H 0.028 0.972 7 C 0.010 3.990 8 N -0.955 5.955 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.239 1.239 12 H -0.303 1.303 13 N -0.685 5.685 14 C 0.009 3.991 15 C 0.398 3.602 16 O -0.473 6.473 17 C -0.161 4.161 18 C -0.061 4.061 19 C -0.102 4.102 20 C -0.071 4.071 21 Br -0.038 7.038 22 C -0.104 4.104 23 C -0.067 4.067 24 H 0.041 0.959 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.263 0.737 30 H 0.338 0.662 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.154 0.846 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.501 -6.166 -27.485 30.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.196 4.196 3 C 0.082 3.918 4 H 0.058 0.942 5 C -0.529 4.529 6 H 0.046 0.954 7 C -0.186 4.186 8 N -0.596 5.596 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.163 1.163 12 H -0.232 1.232 13 N -0.317 5.317 14 C -0.121 4.121 15 C 0.276 3.724 16 O -0.349 6.349 17 C -0.163 4.163 18 C -0.079 4.079 19 C -0.122 4.122 20 C -0.151 4.151 21 Br 0.048 6.952 22 C -0.124 4.124 23 C -0.086 4.086 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.158 0.842 31 H 0.135 0.865 32 H 0.105 0.895 33 H 0.182 0.818 34 H 0.180 0.820 35 H 0.172 0.828 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.610 -5.266 -27.754 30.936 hybrid contribution -0.434 -1.021 0.952 1.461 sum 12.176 -6.287 -26.803 30.103 Atomic orbital electron populations 1.21595 0.95674 1.00599 1.01536 1.22442 0.97526 0.99247 1.00422 1.19518 0.95672 0.89124 0.87437 0.94209 1.21120 1.30078 1.11427 0.90320 0.95402 1.25763 0.97096 1.00096 0.95675 1.70060 1.47376 1.42767 0.99440 0.85895 0.79873 0.79749 0.77126 1.19378 1.16286 1.23152 1.60299 1.04913 1.63600 1.02897 1.22466 0.98581 1.00730 0.90287 1.22850 0.84069 0.76385 0.89111 1.90525 1.24266 1.33856 1.86264 1.20658 0.97784 1.02921 0.94915 1.21762 0.91488 0.94998 0.99689 1.21398 1.01190 0.99049 0.90533 1.22314 0.96627 1.02310 0.93819 1.96778 1.67344 1.97443 1.33650 1.21259 0.92914 0.98634 0.99575 1.21511 0.99592 0.96166 0.91321 0.94012 0.92821 0.92441 0.90862 0.93927 0.92792 0.84235 0.86528 0.89456 0.81781 0.82031 0.82812 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 9.40 71.98 0.68 -4.53 16 2 C -0.16 -5.97 5.22 30.59 0.16 -5.81 16 3 C 0.19 8.37 1.93 44.17 0.09 8.46 16 4 H 0.04 1.71 6.85 -2.38 -0.02 1.69 16 5 C -0.49 -27.64 7.82 25.60 0.20 -27.44 16 6 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 7 C 0.01 0.57 5.42 84.65 0.46 1.02 16 8 N -0.96 -59.99 13.96 21.45 0.30 -59.69 16 9 Si 0.95 43.25 24.32 68.60 1.67 44.92 16 10 H -0.27 -11.67 6.92 99.48 0.69 -10.98 16 11 H -0.24 -9.67 6.53 99.48 0.65 -9.02 16 12 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 13 N -0.68 -27.09 5.89 -499.47 -2.94 -30.03 16 14 C 0.01 0.24 4.57 85.56 0.39 0.64 16 15 C 0.40 11.18 7.15 28.02 0.20 11.38 16 16 O -0.47 -17.06 16.16 -2.98 -0.05 -17.11 16 17 C -0.16 -3.43 5.87 -20.15 -0.12 -3.55 16 18 C -0.06 -0.94 9.47 22.58 0.21 -0.73 16 19 C -0.10 -1.40 9.76 22.24 0.22 -1.19 16 20 C -0.07 -1.08 6.23 22.41 0.14 -0.94 16 21 Br -0.04 -0.51 33.69 -20.37 -0.69 -1.20 16 22 C -0.10 -1.68 9.76 22.24 0.22 -1.46 16 23 C -0.07 -1.34 9.60 22.57 0.22 -1.12 16 24 H 0.04 1.92 6.83 -2.39 -0.02 1.91 16 25 H 0.05 1.87 6.66 -2.38 -0.02 1.86 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.07 2.21 7.43 -2.39 -0.02 2.20 16 28 H 0.04 1.70 3.43 -2.39 -0.01 1.69 16 29 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.34 13.42 6.30 -89.69 -0.56 12.86 16 31 H 0.12 2.98 8.02 -2.39 -0.02 2.96 16 32 H 0.09 1.94 7.39 -2.39 -0.02 1.92 16 33 H 0.16 1.82 7.05 -2.91 -0.02 1.80 16 34 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 35 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.14 2.84 7.65 -2.91 -0.02 2.82 16 Total: -1.00 -70.21 315.01 1.82 -68.39 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.47 Total: 20.00 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: 3.06 Total: -25.28 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -2.64 Total: -89.72 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.05 Total: -17.11 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.67 Total: 44.92 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -0.69 Total: -1.20 kcal Total: -70.21 1.82 -68.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150135.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.308 kcal (2) G-P(sol) polarization free energy of solvation -70.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds